Tan0016597 (gene) Snake gourd v1

Overview
NameTan0016597
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG05: 74675591 .. 74676121 (-)
RNA-Seq ExpressionTan0016597
SyntenyTan0016597
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCTATCAAACTCGTCATATTTTTGCTTGCTTTGTTTTACCTTTATTTCAAAGATCAAGGTAGTTAAATAACTGTTTGATCACGATTTTTTTTTAATGTAACATCAATATATACATTTTTTTTTATCTAGCTTCATTATTATTTGCTTTCTATAGGAGTTAATTTTGTAATAAATTGTCATGTAGGTAGGGTTGCTGATGGGAGAAGTTATCGTTTTCAAATGCGAGTTGAAAGAGGAAAGCAAAGGGAGTTGGCGAGAAAGATGGTGGACAAAGGAGATCATTTGACGATGGTAAAGGAGCAAGACCATCCTACTTTTTCAAGTACAATCGACTCTTTTGATAATTTTTATCGAGGAAACAATGAGCATTTGAATGTAAAATACAAATTAATTGACAAAAGAGATAACAGTTATGGTCGTCATCTACTTGATGTCAAAAGTTCTAACTTTGTACCTATTAATGCTGACTATTTTGTAGCTAAACCTCATCCTCCAAAGAATAATGGAGGGAATAAGTGTCTCTAA

mRNA sequence

ATGACGTCTATCAAACTCGTCATATTTTTGCTTGCTTTGTTTTACCTTTATTTCAAAGATCAAGGTAGGGTTGCTGATGGGAGAAGTTATCGTTTTCAAATGCGAGTTGAAAGAGGAAAGCAAAGGGAGTTGGCGAGAAAGATGGTGGACAAAGGAGATCATTTGACGATGGTAAAGGAGCAAGACCATCCTACTTTTTCAAGTACAATCGACTCTTTTGATAATTTTTATCGAGGAAACAATGAGCATTTGAATGTAAAATACAAATTAATTGACAAAAGAGATAACAGTTATGGTCGTCATCTACTTGATGTCAAAAGTTCTAACTTTGTACCTATTAATGCTGACTATTTTGTAGCTAAACCTCATCCTCCAAAGAATAATGGAGGGAATAAGTGTCTCTAA

Coding sequence (CDS)

ATGACGTCTATCAAACTCGTCATATTTTTGCTTGCTTTGTTTTACCTTTATTTCAAAGATCAAGGTAGGGTTGCTGATGGGAGAAGTTATCGTTTTCAAATGCGAGTTGAAAGAGGAAAGCAAAGGGAGTTGGCGAGAAAGATGGTGGACAAAGGAGATCATTTGACGATGGTAAAGGAGCAAGACCATCCTACTTTTTCAAGTACAATCGACTCTTTTGATAATTTTTATCGAGGAAACAATGAGCATTTGAATGTAAAATACAAATTAATTGACAAAAGAGATAACAGTTATGGTCGTCATCTACTTGATGTCAAAAGTTCTAACTTTGTACCTATTAATGCTGACTATTTTGTAGCTAAACCTCATCCTCCAAAGAATAATGGAGGGAATAAGTGTCTCTAA

Protein sequence

MTSIKLVIFLLALFYLYFKDQGRVADGRSYRFQMRVERGKQRELARKMVDKGDHLTMVKEQDHPTFSSTIDSFDNFYRGNNEHLNVKYKLIDKRDNSYGRHLLDVKSSNFVPINADYFVAKPHPPKNNGGNKCL
Homology
BLAST of Tan0016597 vs. NCBI nr
Match: XP_022137288.1 (uncharacterized protein LOC111008786 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 7.7e-22
Identity = 75/133 (56.39%), Postives = 88/133 (66.17%), Query Frame = 0

Query: 5   KLVIFLLALFYLYFKDQGR-VADGRSYRFQM-RVERGKQRELARKMVDKGDHLTMVKEQD 64
           +LVIFLLA F L+  DQG  +A GR+Y F M RV   KQRE  RKM+ K D L  VKE+ 
Sbjct: 6   RLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKED-LRRVKEEG 65

Query: 65  HPTFSSTIDSFDNFY-RGNNEHLNVKYKLIDKRDNSYGRHLLDVKSSNFVPINADYFVAK 124
           H    ST  S  N   R N E+ + K KLI KRD +  +H LDV++S+FV  NADYFVAK
Sbjct: 66  HHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADYFVAK 125

Query: 125 PHPPKNNGGNKCL 135
           PHPPKNNGG KCL
Sbjct: 126 PHPPKNNGG-KCL 136

BLAST of Tan0016597 vs. NCBI nr
Match: XP_031736121.1 (uncharacterized protein LOC116401758 [Cucumis sativus] >KGN64086.1 hypothetical protein Csa_014013 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 7.9e-19
Identity = 67/135 (49.63%), Postives = 81/135 (60.00%), Query Frame = 0

Query: 1   MTSIKLVIFLLALFYLYFKDQGRVADGRSYRFQMRVERGKQRELARKMVDKGDHLTMVKE 60
           M S +L +F L  F L    +G VADGRSY    +V   + +E   K +++      VKE
Sbjct: 1   MASPRLRLFFLFAFVLL---RGGVADGRSYPVSTQVLGKETQEDVMKKMER----IRVKE 60

Query: 61  QDHPTFS-STIDSFDNFYRGNNEHLNVKYKLIDKRDNSYGRHLLDVKSSNFVPINADYFV 120
           QD    S ST DS DN Y+     LNVKYK I+KRD S G HLL+ + S F+  NADYFV
Sbjct: 61  QDGCRSSPSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFV 120

Query: 121 AKPHPPKNNGGNKCL 135
           AKPHPPKNNGG K L
Sbjct: 121 AKPHPPKNNGGGKYL 128

BLAST of Tan0016597 vs. NCBI nr
Match: TYJ98963.1 (hypothetical protein E5676_scaffold248G001660 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 7.4e-17
Identity = 64/131 (48.85%), Postives = 78/131 (59.54%), Query Frame = 0

Query: 1   MTSIKLVIFLLALFYLYFKDQGRVADGRSYRFQMRVERGKQRELARKMVDKGDHLTMVKE 60
           M S++L+IFL    +L    +G VADGRSY     V   K+ E   K + K      VKE
Sbjct: 3   MASVRLLIFLFTFVFL----RGGVADGRSYPVSTPVAECKEME---KDIMKKMERIRVKE 62

Query: 61  QDHPTFS-STIDSFDNFYRGNNEHLNVKYKLIDKRDNSYGRHLLDVKSSNFVPINADYFV 120
            D    S STIDS DN Y+   + LNVKYK ++K   S+G HL + K S F+  NADYFV
Sbjct: 63  VDGCRSSPSTIDSSDNLYKKKKKSLNVKYKWVNK---SHGGHLPNDKGSRFIAFNADYFV 122

Query: 121 AKPHPPKNNGG 131
           AKPHPPKNNGG
Sbjct: 123 AKPHPPKNNGG 123

BLAST of Tan0016597 vs. ExPASy TrEMBL
Match: A0A6J1C9X6 (uncharacterized protein LOC111008786 OS=Momordica charantia OX=3673 GN=LOC111008786 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 75/133 (56.39%), Postives = 88/133 (66.17%), Query Frame = 0

Query: 5   KLVIFLLALFYLYFKDQGR-VADGRSYRFQM-RVERGKQRELARKMVDKGDHLTMVKEQD 64
           +LVIFLLA F L+  DQG  +A GR+Y F M RV   KQRE  RKM+ K D L  VKE+ 
Sbjct: 6   RLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKED-LRRVKEEG 65

Query: 65  HPTFSSTIDSFDNFY-RGNNEHLNVKYKLIDKRDNSYGRHLLDVKSSNFVPINADYFVAK 124
           H    ST  S  N   R N E+ + K KLI KRD +  +H LDV++S+FV  NADYFVAK
Sbjct: 66  HHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADYFVAK 125

Query: 125 PHPPKNNGGNKCL 135
           PHPPKNNGG KCL
Sbjct: 126 PHPPKNNGG-KCL 136

BLAST of Tan0016597 vs. ExPASy TrEMBL
Match: A0A0A0LVN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040000 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.8e-19
Identity = 67/135 (49.63%), Postives = 81/135 (60.00%), Query Frame = 0

Query: 1   MTSIKLVIFLLALFYLYFKDQGRVADGRSYRFQMRVERGKQRELARKMVDKGDHLTMVKE 60
           M S +L +F L  F L    +G VADGRSY    +V   + +E   K +++      VKE
Sbjct: 1   MASPRLRLFFLFAFVLL---RGGVADGRSYPVSTQVLGKETQEDVMKKMER----IRVKE 60

Query: 61  QDHPTFS-STIDSFDNFYRGNNEHLNVKYKLIDKRDNSYGRHLLDVKSSNFVPINADYFV 120
           QD    S ST DS DN Y+     LNVKYK I+KRD S G HLL+ + S F+  NADYFV
Sbjct: 61  QDGCRSSPSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFV 120

Query: 121 AKPHPPKNNGGNKCL 135
           AKPHPPKNNGG K L
Sbjct: 121 AKPHPPKNNGGGKYL 128

BLAST of Tan0016597 vs. ExPASy TrEMBL
Match: A0A5D3BI53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001660 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.6e-17
Identity = 64/131 (48.85%), Postives = 78/131 (59.54%), Query Frame = 0

Query: 1   MTSIKLVIFLLALFYLYFKDQGRVADGRSYRFQMRVERGKQRELARKMVDKGDHLTMVKE 60
           M S++L+IFL    +L    +G VADGRSY     V   K+ E   K + K      VKE
Sbjct: 3   MASVRLLIFLFTFVFL----RGGVADGRSYPVSTPVAECKEME---KDIMKKMERIRVKE 62

Query: 61  QDHPTFS-STIDSFDNFYRGNNEHLNVKYKLIDKRDNSYGRHLLDVKSSNFVPINADYFV 120
            D    S STIDS DN Y+   + LNVKYK ++K   S+G HL + K S F+  NADYFV
Sbjct: 63  VDGCRSSPSTIDSSDNLYKKKKKSLNVKYKWVNK---SHGGHLPNDKGSRFIAFNADYFV 122

Query: 121 AKPHPPKNNGG 131
           AKPHPPKNNGG
Sbjct: 123 AKPHPPKNNGG 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022137288.17.7e-2256.39uncharacterized protein LOC111008786 [Momordica charantia][more]
XP_031736121.17.9e-1949.63uncharacterized protein LOC116401758 [Cucumis sativus] >KGN64086.1 hypothetical ... [more]
TYJ98963.17.4e-1748.85hypothetical protein E5676_scaffold248G001660 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A6J1C9X63.7e-2256.39uncharacterized protein LOC111008786 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A0A0LVN93.8e-1949.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040000 PE=4 SV=1[more]
A0A5D3BI533.6e-1748.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016597.1Tan0016597.1mRNA