Tan0016580 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTTCTCAATGTCTCTTCCTTGTTCCTTCAAAATGGCTCTCACTGTTGCTTTCTTCTTCTTCTTCTTCTTCTTCACATTTCTTCCTTCTAAATCAGGTATATAGAATCTTCATCAAACCCCATTTGCTTAGATTGTTTTGGTATTATGAAACTTGGGTTTTGTTTAATTTTCATCATCCAATTTGCAAATTTTTTAAGTTTATTTTGTCTCTATTTTTTAAGTTTATTTTAGAAGACAACTTGGGAGAGTCTCAATTTTTTTTTATAAAGGCATTCCAAACACATCCTAACTCGAAAGTTTCAAACGAGTAGAATTTTTTTTGGTGTTATAACATTAAAAGGGTAATTGCTCATCCACTTGTTCTCGTGTTTTCAATTATTGGGTAGGGCTAGAATTTTTCAAATAGATTAAAAATTTTACCTTTTGACATTGAAAACATTTAGGGGACAAATTAATTAAGAAGAAAAATTTGAAACTTTAACAAGGAGTAGTTACTAATTACTCATCCACTTTTTTCTTTTGTGTTTCTCTGCATTTGATACTTACAATGGCAGAGTCAGAAATGACAAAGCTTTACATTTCCAGGAATGAAAATTTAAAATGAAAATTGTTTAAACTTTTTACTGGGGTAATTGAATTGCTACCTTCTTCGTTCCTTCTTGATAAAGTTACCTTTTTTTTTTTAACAGGCGGCAGAGGGGTAAAAGAAATGAAAATTTTAGAGAAGGGTGAAAGTAAAAATTATGCAGAAGAGAAAAAAATGGTGATTGGTTCAAGGCCGCCGGGGTGTGAGAACAAGTGCAAGAGTTGCAGGCCGTGCATGGCGGCGGCGGTGGTGCCGGTGCACAAAGCCTTTTTTGGTTCCTCTCGAGTGGAAGAAGATAGCTATTATCTTCTCTCTTGGAAATGCCGATGTGGGAATAAGATCTATCAACCTTAG ATGGCTTTCTCAATGTCTCTTCCTTGTTCCTTCAAAATGGCTCTCACTGTTGCTTTCTTCTTCTTCTTCTTCTTCTTCACATTTCTTCCTTCTAAATCAGAGAAAAAAATGGTGATTGGTTCAAGGCCGCCGGGGTGTGAGAACAAGTGCAAGAGTTGCAGGCCGTGCATGGCGGCGGCGGTGGTGCCGGTGCACAAAGCCTTTTTTGGTTCCTCTCGAGTGGAAGAAGATAGCTATTATCTTCTCTCTTGGAAATGCCGATGTGGGAATAAGATCTATCAACCTTAG ATGGCTTTCTCAATGTCTCTTCCTTGTTCCTTCAAAATGGCTCTCACTGTTGCTTTCTTCTTCTTCTTCTTCTTCTTCACATTTCTTCCTTCTAAATCAGAGAAAAAAATGGTGATTGGTTCAAGGCCGCCGGGGTGTGAGAACAAGTGCAAGAGTTGCAGGCCGTGCATGGCGGCGGCGGTGGTGCCGGTGCACAAAGCCTTTTTTGGTTCCTCTCGAGTGGAAGAAGATAGCTATTATCTTCTCTCTTGGAAATGCCGATGTGGGAATAAGATCTATCAACCTTAG MAFSMSLPCSFKMALTVAFFFFFFFFTFLPSKSEKKMVIGSRPPGCENKCKSCRPCMAAAVVPVHKAFFGSSRVEEDSYYLLSWKCRCGNKIYQP Homology
BLAST of Tan0016580 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 8.7e-07 Identity = 24/57 (42.11%), Postives = 32/57 (56.14%), Query Frame = 0
BLAST of Tan0016580 vs. ExPASy Swiss-Prot
Match: P43212 (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06 Identity = 25/60 (41.67%), Postives = 31/60 (51.67%), Query Frame = 0
BLAST of Tan0016580 vs. ExPASy Swiss-Prot
Match: Q1G3V9 (EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EPFL8 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06 Identity = 32/95 (33.68%), Postives = 48/95 (50.53%), Query Frame = 0
BLAST of Tan0016580 vs. ExPASy Swiss-Prot
Match: Q9T068 (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 9.7e-06 Identity = 28/77 (36.36%), Postives = 37/77 (48.05%), Query Frame = 0
BLAST of Tan0016580 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 9.7e-06 Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = 0
BLAST of Tan0016580 vs. NCBI nr
Match: KAG7025740.1 (Polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31 Identity = 78/125 (62.40%), Postives = 82/125 (65.60%), Query Frame = 0
BLAST of Tan0016580 vs. NCBI nr
Match: KAG6593393.1 (Polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29 Identity = 77/125 (61.60%), Postives = 81/125 (64.80%), Query Frame = 0
BLAST of Tan0016580 vs. NCBI nr
Match: KAE8646441.1 (hypothetical protein Csa_015844 [Cucumis sativus]) HSP 1 Score: 124.8 bits (312), Expect = 4.0e-25 Identity = 72/125 (57.60%), Postives = 79/125 (63.20%), Query Frame = 0
BLAST of Tan0016580 vs. NCBI nr
Match: XP_008461115.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo]) HSP 1 Score: 122.1 bits (305), Expect = 2.6e-24 Identity = 70/125 (56.00%), Postives = 79/125 (63.20%), Query Frame = 0
BLAST of Tan0016580 vs. NCBI nr
Match: KAA0058756.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo var. makuwa] >TYK10550.1 EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo var. makuwa]) HSP 1 Score: 120.6 bits (301), Expect = 7.6e-24 Identity = 70/125 (56.00%), Postives = 77/125 (61.60%), Query Frame = 0
BLAST of Tan0016580 vs. ExPASy TrEMBL
Match: A0A0A0K6C2 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G432570 PE=3 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.9e-25 Identity = 72/125 (57.60%), Postives = 79/125 (63.20%), Query Frame = 0
BLAST of Tan0016580 vs. ExPASy TrEMBL
Match: A0A1S3CDZ4 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103499797 PE=3 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24 Identity = 70/125 (56.00%), Postives = 79/125 (63.20%), Query Frame = 0
BLAST of Tan0016580 vs. ExPASy TrEMBL
Match: A0A5D3CGR2 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002030 PE=3 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 3.7e-24 Identity = 70/125 (56.00%), Postives = 77/125 (61.60%), Query Frame = 0
BLAST of Tan0016580 vs. ExPASy TrEMBL
Match: A0A6J1JXA0 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111488325 PE=3 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 2.2e-21 Identity = 61/95 (64.21%), Postives = 67/95 (70.53%), Query Frame = 0
BLAST of Tan0016580 vs. ExPASy TrEMBL
Match: A0A6J1GR07 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456330 PE=3 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 5.0e-21 Identity = 61/95 (64.21%), Postives = 66/95 (69.47%), Query Frame = 0
BLAST of Tan0016580 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 54.3 bits (129), Expect = 6.2e-08 Identity = 24/57 (42.11%), Postives = 32/57 (56.14%), Query Frame = 0
BLAST of Tan0016580 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 54.3 bits (129), Expect = 6.2e-08 Identity = 24/57 (42.11%), Postives = 32/57 (56.14%), Query Frame = 0
BLAST of Tan0016580 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07 Identity = 32/95 (33.68%), Postives = 48/95 (50.53%), Query Frame = 0
BLAST of Tan0016580 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 6.9e-07 Identity = 28/77 (36.36%), Postives = 37/77 (48.05%), Query Frame = 0
BLAST of Tan0016580 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 6.9e-07 Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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