Tan0016556 (gene) Snake gourd v1

Overview
NameTan0016556
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG08: 63499963 .. 63502056 (+)
RNA-Seq ExpressionTan0016556
SyntenyTan0016556
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTTGGGTTTGACCTTGTATGCTGCTTGAACTTCTGCCTCTGGTTCACACAGTTCGACCGTGCTTGGAATGAGAGGATAGCCCTTTTTGGGTCACATATTGTTCAAAAAAACATTTCTGTGGCAAGTGCTTAGAAGGCTATCAGGCTTATCTAGTTTTGAAGAAATATACCTAAACATTCACTCATTGCTTGGTTGACATTTCGTGATCAATTGTTCACCAAGGATCATCTTCATAGCTAGGATGATTTTCTATTCTAATCGCTTACTTCTTTTGCTCATCTTCTGCATAATTTCGAGTTCATTTATTTTTTGAGTGTCTTTTTAGTCGAACAGTTTGGGATGGTATTCTTTCTTGAGAACATTCTACCCATCAGATTTCTTCTTGGGTCTCTAAGTTAGACTAGATTTACCAGGTGAATAGGGGCAAATGTTGTCATTTTGGTGTGCTTCCATTTATCATATTTGGAGGGAGCGAAACTTTCAACTTTGGGTCGGCTGCTCATTCTCTCCCGTCTATCCTTTTTATTATTCAGGCGAATGTGGCTGCTAGATGTTCCACCTAGTTGATGTGTCAATTGTCTCCCCCTTTTAATTCTCCCTGGATTTTGTTCCCTCAATACTTTGAGGTTCTGGGCTAGTTTATTATGGGTTATGCCTATTGTTTGTCGTGTTCGGTTTGTGAGTTCTTGGTTCGACATCACAGCCCATGCAACACTTCATGGTTTTGTAAGTTTATTTTTCTCTGCATTTTAAGCTTTATGTAATAACATTTGACATATTAAAACCTGATGAATTTCAAGATTGTTCAATAGTTCTTTTTAGTTCAACAATATTTAAGAATTGGGGGATTAGAATATATGAACTCTTGGTCGAGAGTACATGACTATTACTGTTGACCTAAGCTCGCTTTAGCGTTCAATACTACCACGATAATTTATAACATTTGAATGATATTGCTCTCGGCATCATAATAATCTAGACATTCACTTTTGCATATGACATCATTTGATACAACCATTCTTATAACTCAATCAACTGAACTTAATCTTTTGTTTTAAGTTGAAGCAAAAAATGTGATGAAAATTCAAAATTTTTATGATCTTTTAAAAACAGTTACTAATATTTTAACTCGTTAAACTATATTTAGGTTGGCAATTCATCAATTTCATTCACCCATCAAAAGTAAATTATTAATAATTAGGTTATTTTGATAACTATTTCAATTTTTAGTTTTTTCTTTTTTTGTTTCCTGTTTTTTGTTTTTTAAAAACAAAAAACATATAAGTTTGATGACTGTTTTTTATTATCTATTTTAAAAAAATAGAAACCCAATCTTGTTTGATAATTTTTTTTTATTTTTAATTTTTTTTATGAAGAGATGTTTTAGAGAGAAAAACACTTGGGAAAAATGCACTTTTGGTCCCTCAGTTTGCAGGTGAGTTTCTATTGAGTCCCTAAGTTTCAAAATCGAAGAATCAAATCCTTTAATTTGGTAAAATAGTTCAATTGGGTCCCTGAACGTTAAACACCGTTAAATAATTATTAAATTGTTGATGTGATAGTTTTTAATATTAAAATAATAATTTTTATTATTATAATAATAATAATAATAATAATAAATTAAGAAGAAGAAAAAATCCTCTCTCCTCTCTCCTCTCTCCTTCCCTTTCCCCTTCCTGTAGAGTAAACCCTTCTCCATTGGAGATCTATGACCATAACCTTAACCTTAACCCTAGTGTTGTGGAGATTTTCCCCTACCAAAGTATTGTGTAGTCGTTGACACGCCAGATCTATGACCATAACCCTAGTGTTGAAGTAGCAGACATTTCTTCTGGCGAAGGTGAGGGACAGAGAGGGGTTGGACCAAAAAGTGGGAGTGAAATAGGACGTCAAATTGGTGTTGCAATACTCCGACGCGACGAGGACGATGGTTTCCCCAAGTGGAGTGGCAGAAAGATTGGCAACGTCGTCGACGAGGATCAAATCGGAGTCCAAATAGACGACATGTTGGACGCAGTGGGGAATCAGGGAGGCCAAATAGTTGCTAGCGTAATTGAGAGTGGAATTGAGGGCGGAGCGAATTGGTAG

mRNA sequence

ATGGGTCTTGGGTTTGACCTTTCGTTGACACGCCAGATCTATGACCATAACCCTAGTGTTGAAGTAGCAGACATTTCTTCTGGCGAAGGTGAGGGACAGAGAGGGGTTGGACCAAAAAGTGGGAGTGAAATAGGACGTCAAATTGGTGTTGCAATACTCCGACGCGACGAGGACGATGGTTTCCCCAAGTGGAGTGGCAGAAAGATTGGCAACGTCGTCGACGAGGATCAAATCGGAGTCCAAATAGACGACATGTTGGACGCAGTGGGGAATCAGGGAGGCCAAATAGTTGCTAGCGTAATTGAGAGTGGAATTGAGGGCGGAGCGAATTGGTAG

Coding sequence (CDS)

ATGGGTCTTGGGTTTGACCTTTCGTTGACACGCCAGATCTATGACCATAACCCTAGTGTTGAAGTAGCAGACATTTCTTCTGGCGAAGGTGAGGGACAGAGAGGGGTTGGACCAAAAAGTGGGAGTGAAATAGGACGTCAAATTGGTGTTGCAATACTCCGACGCGACGAGGACGATGGTTTCCCCAAGTGGAGTGGCAGAAAGATTGGCAACGTCGTCGACGAGGATCAAATCGGAGTCCAAATAGACGACATGTTGGACGCAGTGGGGAATCAGGGAGGCCAAATAGTTGCTAGCGTAATTGAGAGTGGAATTGAGGGCGGAGCGAATTGGTAG

Protein sequence

MGLGFDLSLTRQIYDHNPSVEVADISSGEGEGQRGVGPKSGSEIGRQIGVAILRRDEDDGFPKWSGRKIGNVVDEDQIGVQIDDMLDAVGNQGGQIVASVIESGIEGGANW
Homology
BLAST of Tan0016556 vs. NCBI nr
Match: RYR10955.1 (hypothetical protein Ahy_B05g079443 [Arachis hypogaea])

HSP 1 Score: 90.5 bits (223), Expect = 9.8e-15
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = 0

Query: 12  QIYDHNPSVEVADISSGEGEGQRGVGPKSGSEIGRQIGVAILRRDEDDGFPKWSGRKIGN 71
           +I DH+ SVEVA  S GE E Q  VGP+  SE+  ++ V +LR  ED    +W G ++G+
Sbjct: 67  EIDDHDASVEVAGPSGGECERQGRVGPERWSEVCAEVCVTVLRCGEDGVVREWRGGELGD 126

Query: 72  VVDEDQIGVQIDDMLDAVGNQGGQIVASVIESGIEGGAN 111
           VVD+D++GV++DD  DA G + G++VA V+E  +EGGA+
Sbjct: 127 VVDQDEVGVKVDDTADAGGEEVGEVVAGVVERTVEGGAD 165

BLAST of Tan0016556 vs. NCBI nr
Match: PON36456.1 (hypothetical protein PanWU01x14_328190 [Parasponia andersonii])

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-09
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 12  QIYDHNPSVEVADISSGEGEGQRGVGPKSGSEIGRQIGVAILRRDEDDGFPKWSGRKIGN 71
           QI  H+P VEVA + + EG+G+R V P+ G E+G ++GVA+LRR E     +  GR++GN
Sbjct: 75  QIDHHHPGVEVAGLPAREGQGERRVRPECGGEVGSEVGVAVLRRGEHGRLAELRGRQLGN 134

Query: 72  VVDEDQI 79
           VVDED++
Sbjct: 135 VVDEDEV 141

BLAST of Tan0016556 vs. NCBI nr
Match: POO03174.1 (hypothetical protein TorRG33x02_012350 [Trema orientale])

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-09
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 12  QIYDHNPSVEVADISSGEGEGQRGVGPKSGSEIGRQIGVAILRRDEDDGFPKWSGRKIGN 71
           QI  H+P VEVA + + EG+G+R V P+ G E+G ++GVA+LRR E     +  GR++GN
Sbjct: 75  QIDHHHPGVEVAGLPAREGQGERRVRPERGGEVGGEVGVAVLRRGEHGRLAELRGRQLGN 134

Query: 72  VVDEDQI 79
           VVDED++
Sbjct: 135 VVDEDEV 141

BLAST of Tan0016556 vs. NCBI nr
Match: THU65636.1 (hypothetical protein C4D60_Mb05t05710 [Musa balbisiana])

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-09
Identity = 39/101 (38.61%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 12  QIYDHNPSVEVADISSG--EGEGQRGVGPKSGSEIGRQIGVAILRRDEDDGFPKWSGRKI 71
           +++DH+P VEVA  ++   EG G   V P++  E+G ++GVA+L   ED    +  G + 
Sbjct: 144 EVHDHDPGVEVAGRAAAVVEGVGVDRVRPEAVCEVGGEVGVAVLGGGEDMVRGEVGGPEA 203

Query: 72  GNVVDEDQIGVQIDDMLDAVGNQGGQIVASVIESGIEGGAN 111
           G+VVD+D++ V++DD +D  G   G++ ASV+E  +EG A+
Sbjct: 204 GDVVDDDEVRVEVDDAVDGTGENVGEVDASVVEWLVEGAAD 244

BLAST of Tan0016556 vs. NCBI nr
Match: TKW05613.1 (hypothetical protein SEVIR_7G187700v2 [Setaria viridis])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 12  QIYDHNPSVEVADISS--GEGEGQRGVGPKSGSEIGRQIGVAILRRDEDDGFPKWSGRKI 71
           Q+ DH+P VEVA  +   GE  G  GV P+   E+G ++GVA+L R E     +  G + 
Sbjct: 195 QVDDHDPGVEVAGDARPVGEDGGVLGVSPERVGEVGGEVGVAVLGRGEGGVGAEVGGPEA 254

Query: 72  GNVVDEDQIGVQIDDMLDAVGNQGGQIVASVIESGIEGGAN 111
           G+VVD++++GV+++D  D    + G++ A V+E  +E  A+
Sbjct: 255 GDVVDDEEVGVEVEDAGDGAREEVGEVDAGVVEGLVERAAD 295

BLAST of Tan0016556 vs. ExPASy TrEMBL
Match: A0A444Z9U7 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B05g079443 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.7e-15
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = 0

Query: 12  QIYDHNPSVEVADISSGEGEGQRGVGPKSGSEIGRQIGVAILRRDEDDGFPKWSGRKIGN 71
           +I DH+ SVEVA  S GE E Q  VGP+  SE+  ++ V +LR  ED    +W G ++G+
Sbjct: 67  EIDDHDASVEVAGPSGGECERQGRVGPERWSEVCAEVCVTVLRCGEDGVVREWRGGELGD 126

Query: 72  VVDEDQIGVQIDDMLDAVGNQGGQIVASVIESGIEGGAN 111
           VVD+D++GV++DD  DA G + G++VA V+E  +EGGA+
Sbjct: 127 VVDQDEVGVKVDDTADAGGEEVGEVVAGVVERTVEGGAD 165

BLAST of Tan0016556 vs. ExPASy TrEMBL
Match: A0A2P5AIS9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_328190 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 12  QIYDHNPSVEVADISSGEGEGQRGVGPKSGSEIGRQIGVAILRRDEDDGFPKWSGRKIGN 71
           QI  H+P VEVA + + EG+G+R V P+ G E+G ++GVA+LRR E     +  GR++GN
Sbjct: 75  QIDHHHPGVEVAGLPAREGQGERRVRPECGGEVGSEVGVAVLRRGEHGRLAELRGRQLGN 134

Query: 72  VVDEDQI 79
           VVDED++
Sbjct: 135 VVDEDEV 141

BLAST of Tan0016556 vs. ExPASy TrEMBL
Match: A0A2P5FZG0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_012350 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 12  QIYDHNPSVEVADISSGEGEGQRGVGPKSGSEIGRQIGVAILRRDEDDGFPKWSGRKIGN 71
           QI  H+P VEVA + + EG+G+R V P+ G E+G ++GVA+LRR E     +  GR++GN
Sbjct: 75  QIDHHHPGVEVAGLPAREGQGERRVRPERGGEVGGEVGVAVLRRGEHGRLAELRGRQLGN 134

Query: 72  VVDEDQI 79
           VVDED++
Sbjct: 135 VVDEDEV 141

BLAST of Tan0016556 vs. ExPASy TrEMBL
Match: A0A4S8JTZ7 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb05t05710 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 39/101 (38.61%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 12  QIYDHNPSVEVADISSG--EGEGQRGVGPKSGSEIGRQIGVAILRRDEDDGFPKWSGRKI 71
           +++DH+P VEVA  ++   EG G   V P++  E+G ++GVA+L   ED    +  G + 
Sbjct: 144 EVHDHDPGVEVAGRAAAVVEGVGVDRVRPEAVCEVGGEVGVAVLGGGEDMVRGEVGGPEA 203

Query: 72  GNVVDEDQIGVQIDDMLDAVGNQGGQIVASVIESGIEGGAN 111
           G+VVD+D++ V++DD +D  G   G++ ASV+E  +EG A+
Sbjct: 204 GDVVDDDEVRVEVDDAVDGTGENVGEVDASVVEWLVEGAAD 244

BLAST of Tan0016556 vs. ExPASy TrEMBL
Match: A0A4U6TWP9 (Uncharacterized protein OS=Setaria viridis OX=4556 GN=SEVIR_7G187700v2 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.6e-08
Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 12  QIYDHNPSVEVADISS--GEGEGQRGVGPKSGSEIGRQIGVAILRRDEDDGFPKWSGRKI 71
           Q+ DH+P VEVA  +   GE  G  GV P+   E+G ++GVA+L R E     +  G + 
Sbjct: 195 QVDDHDPGVEVAGDARPVGEDGGVLGVSPERVGEVGGEVGVAVLGRGEGGVGAEVGGPEA 254

Query: 72  GNVVDEDQIGVQIDDMLDAVGNQGGQIVASVIESGIEGGAN 111
           G+VVD++++GV+++D  D    + G++ A V+E  +E  A+
Sbjct: 255 GDVVDDEEVGVEVEDAGDGAREEVGEVDAGVVEGLVERAAD 295

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
RYR10955.19.8e-1546.46hypothetical protein Ahy_B05g079443 [Arachis hypogaea][more]
PON36456.12.8e-0949.25hypothetical protein PanWU01x14_328190 [Parasponia andersonii][more]
POO03174.13.6e-0949.25hypothetical protein TorRG33x02_012350 [Trema orientale][more]
THU65636.13.6e-0938.61hypothetical protein C4D60_Mb05t05710 [Musa balbisiana][more]
TKW05613.11.2e-0736.63hypothetical protein SEVIR_7G187700v2 [Setaria viridis][more]
Match NameE-valueIdentityDescription
A0A444Z9U74.7e-1546.46Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B05g079443 PE=4 SV=1[more]
A0A2P5AIS91.3e-0949.25Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_328190 PE... [more]
A0A2P5FZG01.7e-0949.25Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_012350 PE=4 SV... [more]
A0A4S8JTZ71.7e-0938.61Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb05t05710 PE=4 SV=... [more]
A0A4U6TWP95.6e-0836.63Uncharacterized protein OS=Setaria viridis OX=4556 GN=SEVIR_7G187700v2 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016556.1Tan0016556.1mRNA