Tan0016529 (gene) Snake gourd v1

Overview
NameTan0016529
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG10: 44836542 .. 44836817 (+)
RNA-Seq ExpressionTan0016529
SyntenyTan0016529
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGAGATATCCTTCCTTTCGAATTCGGCGGAGGCGGCGACGGCGACGGCGGCCGTCGAGGCAGCGAGTCCTGCAGTAGACCTGCGAATTACAACGGAGACATTTTCTTTGGTAAGGATGATATGAAAGAATACGTATGGGATGGAGTTTTCACCGAAGAAACAGTTCGATTCATTGAAAGAGAGTCCGCCATGAAAGCTCTGAGAAGAAAAAGGACAGAAACATTCCATTGCTTTGAGTTCTTGAAATTCCTCTGGTGTTTCAAATTTTAA

mRNA sequence

ATGGCCAGAGATATCCTTCCTTTCGAATTCGGCGGAGGCGGCGACGGCGACGGCGGCCGTCGAGGCAGCGAGTCCTGCAGTAGACCTGCGAATTACAACGGAGACATTTTCTTTGGTAAGGATGATATGAAAGAATACGTATGGGATGGAGTTTTCACCGAAGAAACAGTTCGATTCATTGAAAGAGAGTCCGCCATGAAAGCTCTGAGAAGAAAAAGGACAGAAACATTCCATTGCTTTGAGTTCTTGAAATTCCTCTGGTGTTTCAAATTTTAA

Coding sequence (CDS)

ATGGCCAGAGATATCCTTCCTTTCGAATTCGGCGGAGGCGGCGACGGCGACGGCGGCCGTCGAGGCAGCGAGTCCTGCAGTAGACCTGCGAATTACAACGGAGACATTTTCTTTGGTAAGGATGATATGAAAGAATACGTATGGGATGGAGTTTTCACCGAAGAAACAGTTCGATTCATTGAAAGAGAGTCCGCCATGAAAGCTCTGAGAAGAAAAAGGACAGAAACATTCCATTGCTTTGAGTTCTTGAAATTCCTCTGGTGTTTCAAATTTTAA

Protein sequence

MARDILPFEFGGGGDGDGGRRGSESCSRPANYNGDIFFGKDDMKEYVWDGVFTEETVRFIERESAMKALRRKRTETFHCFEFLKFLWCFKF
Homology
BLAST of Tan0016529 vs. NCBI nr
Match: KAG6576802.1 (hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014829.1 hypothetical protein SDJN02_22458, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.1 bits (305), Expect = 2.5e-24
Identity = 63/96 (65.62%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 1  MARDILPFEFGGGGDGDGGRRGSESCSRPANYN--GDIFFGKDDMKEYVWDGVFTEETVR 60
          MARD LP+EFG GG       G +SCS P+ Y+  GDIFFGKDDMK YVWD VFTEETVR
Sbjct: 1  MARDTLPYEFGVGG-------GGKSCSSPSKYDVVGDIFFGKDDMKGYVWDEVFTEETVR 60

Query: 61 FIERESAMKALR---RKRTETFHCFEFLKFLWCFKF 92
          F+E ESA++ LR   ++R ETF CFEFLKFLWCF F
Sbjct: 61 FLETESAVEVLRKRSKRRLETFKCFEFLKFLWCFNF 89

BLAST of Tan0016529 vs. NCBI nr
Match: KGN57263.1 (hypothetical protein Csa_009618 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 5.6e-24
Identity = 63/94 (67.02%), Postives = 69/94 (73.40%), Query Frame = 0

Query: 1  MARDILPFEFGGGGDGDGGRRGSESCSRPANYNGDIFFGKDDMKEYVWDGVFTEETVRFI 60
          MARDILPFEFGGGG G+  R             GDIFFGKDDMKEY WDGV+TEETVRFI
Sbjct: 1  MARDILPFEFGGGGAGESER------------GGDIFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ERESAMKALR---RKRTETFHCFEFLKFLWCFKF 92
          E ESA KALR   R++ E F+CFEFLK +WCFKF
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLKIVWCFKF 82

BLAST of Tan0016529 vs. NCBI nr
Match: KAA0067665.1 (hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669.1 hypothetical protein E5676_scaffold577G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 5.7e-21
Identity = 59/94 (62.77%), Postives = 67/94 (71.28%), Query Frame = 0

Query: 1  MARDILPFEFGGGGDGDGGRRGSESCSRPANYNGDIFFGKDDMKEYVWDGVFTEETVRFI 60
          MARDILPFEFGGGG G+  R             GD+FFGKDDMKEY WDGV+TEETVRFI
Sbjct: 1  MARDILPFEFGGGGGGESER------------GGDVFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ERESAMKALR---RKRTETFHCFEFLKFLWCFKF 92
          E ESA KALR   R++ E F+CFEFL+ +  FKF
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLRIVCSFKF 82

BLAST of Tan0016529 vs. NCBI nr
Match: KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 8.6e-17
Identity = 49/76 (64.47%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1  MARDILPFEFGGGGDGDGGRRGSESCSRPANYN--GDIFFGKDDMKEYVWDGVFTEETVR 60
          MA D  PFEF  GGDGDGGRR  +SCSRP+ Y+  GDIFFGKDDMKEY WDG FTE+TVR
Sbjct: 1  MAIDTTPFEF--GGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVR 60

Query: 61 FIERESAMKALRRKRT 75
          FIE       +  KR+
Sbjct: 61 FIETVRRFSTVNVKRS 74

BLAST of Tan0016529 vs. NCBI nr
Match: KAG6600176.1 (hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 8.6e-17
Identity = 49/76 (64.47%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1  MARDILPFEFGGGGDGDGGRRGSESCSRPANYN--GDIFFGKDDMKEYVWDGVFTEETVR 60
          MA D  PFEF  GGDGDGGRR  +SCSRP+ Y+  GDIFFGKDDMKEY WDG FTE+TVR
Sbjct: 1  MAIDTTPFEF--GGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVR 60

Query: 61 FIERESAMKALRRKRT 75
          FIE       +  KR+
Sbjct: 61 FIETVRRFSTVNVKRS 74

BLAST of Tan0016529 vs. ExPASy TrEMBL
Match: A0A0A0L658 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.7e-24
Identity = 63/94 (67.02%), Postives = 69/94 (73.40%), Query Frame = 0

Query: 1  MARDILPFEFGGGGDGDGGRRGSESCSRPANYNGDIFFGKDDMKEYVWDGVFTEETVRFI 60
          MARDILPFEFGGGG G+  R             GDIFFGKDDMKEY WDGV+TEETVRFI
Sbjct: 1  MARDILPFEFGGGGAGESER------------GGDIFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ERESAMKALR---RKRTETFHCFEFLKFLWCFKF 92
          E ESA KALR   R++ E F+CFEFLK +WCFKF
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLKIVWCFKF 82

BLAST of Tan0016529 vs. ExPASy TrEMBL
Match: A0A5D3DK72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00350 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.8e-21
Identity = 59/94 (62.77%), Postives = 67/94 (71.28%), Query Frame = 0

Query: 1  MARDILPFEFGGGGDGDGGRRGSESCSRPANYNGDIFFGKDDMKEYVWDGVFTEETVRFI 60
          MARDILPFEFGGGG G+  R             GD+FFGKDDMKEY WDGV+TEETVRFI
Sbjct: 1  MARDILPFEFGGGGGGESER------------GGDVFFGKDDMKEYAWDGVYTEETVRFI 60

Query: 61 ERESAMKALR---RKRTETFHCFEFLKFLWCFKF 92
          E ESA KALR   R++ E F+CFEFL+ +  FKF
Sbjct: 61 ETESAKKALRKRSRRKLEPFNCFEFLRIVCSFKF 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6576802.12.5e-2465.63hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57263.15.6e-2467.02hypothetical protein Csa_009618 [Cucumis sativus][more]
KAA0067665.15.7e-2162.77hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669... [more]
KAG7030840.18.6e-1764.47hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600176.18.6e-1764.47hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0L6582.7e-2467.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1[more]
A0A5D3DK722.8e-2162.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016529.1Tan0016529.1mRNA