Tan0016480 (gene) Snake gourd v1

Overview
NameTan0016480
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG07: 71998762 .. 71999097 (-)
RNA-Seq ExpressionTan0016480
SyntenyTan0016480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGAAGGACGGCGACGAATATGAAAGCAGCACTAAATCCAAATAGAAAAAGAAAATATACGAAGCGCCGAATCTCTTTTCATACATTGTTCTCCACGAATAACAACCGTTCGATTCATCGATGTCTTTAATCGGATGGTAGTGAATGCGGATGTCGCGAGGACAAGGCAGGCTCATGTGAGAGCGATGTAGACGATAGTTACTATGTGCCACGTGGATGCCAGCGTGGATTATTCGACCGGCGTACACGGGTAAAGGAATATTCGCGGAGTCACGTGGCGCGTCGGTATGCTGCATCGCCGAAACGGCCATTTCTGAATAATACGACGTAG

mRNA sequence

ATGGAGCGAAGGACGGCGACGAATATGAAAGCAGCACTAAATCCAAATAGAAAAAGAAAATATACGAAGCGCCGAATCTCTTTTCATACATTTGAATGCGGATGTCGCGAGGACAAGGCAGGCTCATGTGAGAGCGATGTAGACGATAGTTACTATGTGCCACGTGGATGCCAGCGTGGATTATTCGACCGGCGTACACGGGTAAAGGAATATTCGCGGAGTCACGTGGCGCGTCGGTATGCTGCATCGCCGAAACGGCCATTTCTGAATAATACGACGTAG

Coding sequence (CDS)

ATGGAGCGAAGGACGGCGACGAATATGAAAGCAGCACTAAATCCAAATAGAAAAAGAAAATATACGAAGCGCCGAATCTCTTTTCATACATTTGAATGCGGATGTCGCGAGGACAAGGCAGGCTCATGTGAGAGCGATGTAGACGATAGTTACTATGTGCCACGTGGATGCCAGCGTGGATTATTCGACCGGCGTACACGGGTAAAGGAATATTCGCGGAGTCACGTGGCGCGTCGGTATGCTGCATCGCCGAAACGGCCATTTCTGAATAATACGACGTAG

Protein sequence

MERRTATNMKAALNPNRKRKYTKRRISFHTFECGCREDKAGSCESDVDDSYYVPRGCQRGLFDRRTRVKEYSRSHVARRYAASPKRPFLNNTT
Homology
[Close]
BLAST of Tan0016480 vs. NCBI nr
Match: KAE8650868.1 (hypothetical protein Csa_002560, partial [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 36 REDKAGSCESDVDDSYYVPRGCQRGLFDRRTRVKEYSRSHVAR 79
          RE +      +VDDS YVPRGCQRGLF R TR+KEYS SHVAR
Sbjct: 22 RERRQAQRLGNVDDSLYVPRGCQRGLFGRLTRMKEYSWSHVAR 64

[Close]
BLAST of Tan0016480 vs. ExPASy TrEMBL
Match: A0A0A0L981 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G638000 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 0 

Query: 1  MERRTATNMKAALNPNRKRKYTKRRISFHTFECGCREDKAGSCESDVDDSYYVPRGCQRG 60
          MERRTATNMK ALNPNRK K  + RI         RE +      +VDDS YVPRGCQRG
Sbjct: 16 MERRTATNMKGALNPNRKIK--RMRI--------LRERRQAQRLGNVDDSLYVPRGCQRG 75

Query: 61 LFDRRTRVKEYSRSHVARRYAA 83
          LF R TR+KEYS SHVAR Y A
Sbjct: 76 LFGRLTRMKEYSWSHVARGYVA 87

The following BLAST results are available for this feature:
BLAST of Tan0016480 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0016480 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650868.12.0e-0567.44hypothetical protein Csa_002560, partial [Cucumis sativus][more]
BLAST of Tan0016480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9812.2e-1362.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G638000 PE=4 SV=1[more]
BLAST of Tan0016480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016480.1Tan0016480.1mRNA