Tan0016410 (gene) Snake gourd v1

Overview


Name	Tan0016410
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 36901600 .. 36901773 (+)
RNA-Seq Expression	Tan0016410
Synteny	Tan0016410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGGTGAGCTCAAAAGAGGAGATTCTAGAAGATGTTGGAGTCTTTCCCTACATGTTGTGCAAAGTTGAACTTCAAGATGGAGACGCATTAAATGCATTCTAA

mRNA sequence

ATGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGGTGAGCTCAAAAGAGGAGATTCTAGAAGATGTTGGAGTCTTTCCCTACATGTTGTGCAAAGTTGAACTTCAAGATGGAGACGCATTAAATGCATTCTAA

Coding sequence (CDS)

ATGCCTGAAGGTCCAATTACAAGGTCGAGAGCCAAGAAGCTACAACAAGCTTTAATCACTCATATTCAAGCTATGGTGAGCTCAAAAGAGGAGATTCTAGAAGATGTTGGAGTCTTTCCCTACATGTTGTGCAAAGTTGAACTTCAAGATGGAGACGCATTAAATGCATTCTAA

Protein sequence

MPEGPITRSRAKKLQQALITHIQAMVSSKEEILEDVGVFPYMLCKVELQDGDALNAF

Homology

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BLAST of Tan0016410 vs. NCBI nr
Match: XP_038900633.1 (uncharacterized protein LOC120087799 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1   MPEGPITRSRAKKLQQALITHIQAMVSSKEEILEDVGVFPYMLCKVELQDGDALNAF 58
           M +G I RSRAKKL QALITHIQAMV+S ++I+EDV V  YMLCKVE QD DALNAF
Sbjct: 104 MSQGSIIRSRAKKL-QALITHIQAMVTSTKDIVEDVRVLSYMLCKVEFQDEDALNAF 159

The following BLAST results are available for this feature:

BLAST of Tan0016410 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900633.1	2.0e-11	73.68	uncharacterized protein LOC120087799 [Benincasa hispida]	[more]

BLAST of Tan0016410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Tan0016410 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016410.1	Tan0016410.1	mRNA