Tan0016391 (gene) Snake gourd v1

Overview


Name	Tan0016391
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase III subunit RPC3
Location	LG01: 2118306 .. 2125569 (-)
RNA-Seq Expression	Tan0016391
Synteny	Tan0016391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGTTTCTTTTGCCCCATTGCCATCCGGCGTCCGCCTTCCCCCACTCGCTTCATCAACCAGTCGTTCTCCTGCCATGGCTTTAGACCTTCTACAGAACAATCTTCGCTCATCTTTTTTCCACCGGAGCTCGAGTTCTTAAGCCACACGCCTCTCTATTTCTCTCTTAACGAATCTTTACTCGGTTGAAACGAAGATTTTCGTTGATTCAAAGTGTCTACACTCTAGTTTCTGCTGAGTCAGTGCTTTCTGACCTTATACTCCGTCAATGTCAATTCTAATTACTTAAGAATACTTGATATCCTAGACGCACGGCAATCTTAAAGAAGACAATCATGGTGATGACTCAGTACGGCATCAAATATGCCGTTCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGGTATGCCCTTTCTTTCTTAATCCGTGCTTCAAATCTTGGTTCGTATGAAATTATCAGCTCGTTCTTCTTCGTACTGTTGTTGTTCATTAGTATTCTTGTGCATTGACAGAAAGTGTGCGAAACCCTGCTCCGAAAGGGGCCTCTGACATTGAGACTTCTTATACGATTCACGGAACTTAGTTCATCACAGGTCAACAACTCCCTTCTCATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGTAGAATGTGTTTTCACTTATGGACAAAGTTCTGGGTCTATGGTATTTTTTGGTAAAGCTATTGTTAGGTTAATTATTGACAATAAACTCACGGGCTAAAAAAACAGCACTTTTATCCTAAATTAAATCTGGACTTGCTTTGAGTTCGATTGAGTTCATATAACTGGGATTATATAGTGTCATTCGAAAGAATTCGATTATGCTTAGTTTAAGCTCATTCGCTTTTTAAGTTTATTATCTTTGATAGGAAGTTATTTTATGGAACCATATTAATACACTATTGGATGATTAGTATTTTAAGAAGGTAGTTGTATTCTCGAAAAGCACATCACTTGTGTGCAGATTGAGCTTCTTATCATTGTTATTGTAATTGCTTGTGTAGGTGAGTTTGGAGACGCACCCAAGGCTGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCGGAAAAGCTTGAGAAAGATAAAGATGTTAGTTCATTTACTCACATCGGAAAAACTGTCTTATTGAGAATTTCCAACTTCGAATGAATTCAGATTCTTAACTTATGTTTCTGATTTTGTAGTGTGAAGAACTTCTCGAGGGTCTGCTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACGTGCAGGCAAGTTTGTTACCTGGTGTTTTTATTTGCATGTCGTTATTTACTTCTATCTTCTGTATTATTTAATATGCTACTTTCTCCCAGTGCCATAAAATCCCGTATTGATTTCAATTTTTAAATGAAACGTTATCAATCAGAACAGGGAGATTTTAAGATTGATGGATCCTGGAGATCATATTCTATATCATTCATGTCAGTCCTAATACCGGATTTTATTATTCAGGCAAGAAACTGACTTCCTTGAACAAGTGGAATTACTAAAGGAGGGGGAAGACGGTCAAAGATTTTTTTCTCACTACGCTACCCTATTTCTATAATTCTAGCTAATTGGCAAACCTTTTTATCACCTCTTGACTTGATTGGGGTTTCATTTTTCAATTAAATTCTATTTGTTTCAAAGAAAAAAGACTTGTTTTTCTTTCAACCTCATCTTGTTTAGAAGAGTAAAATTGGTGCTTAATCCTAAAGCCGTGATATGTTTTGTTGAAGTTGCTGAACAAGCACATTAATGAAGAAATAACATAATTAGAAGGCGGCTCCTGCACTGTGACTCGTATTTGCTTATAATATATCTACTTATACAATCTTTTGGTTTCTGAGGTACTGTTTTTGTATTTGCAGGAAACCGTCCTATTCCAGATGCCGTACATGAAAGTCTATTTAAACTTCTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAACAGCCTCCGCCCAAAAAAAGGGGTGCTAAGGCTGCCAAGGTAGCTGCATGTCGTCTGTGAAACTTGTCATGCATATTGGTGCTAAATATTATCTGAGTCAATAAATCGATCCATAACAGGTATCTGAGGTGCCAGCAACCTTAGAACAGCGTCTTATAGAAGCAGCACGTCCAATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAAAGAGTGAACATCATTCACCAATTTCTGGACAGAAGGTTTGTATGGAAATGTTATATCAGATTACCAAGTTGAAACATGTTTAATACCTTACAATTTTTCTGTAGCGCAAGCGCGGTGATCTGGAGATGGTACAAGAGTCTGGAGATGCAGATGCTATTATTGTTTGGCGTGCGAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGTTAGTATTATTTCACCCTTCGGAATTTCTTATACATTAAATTACAGTGAATGTGATGCTCCTTTTCTTGTATTCACATTAACGATGAGAAAGAAAATCAGGCATGACAAATGTGATCAATTTAATTTAACTCACTTGAAACCTGTTGATAGAGTACTTCAGCGTGCAACTTTTGCAGGTATATTGATATTTTTCCCTTTTTTTTAATAATATATGTAACTGGAAAAGAAACACTACCTAGATGACGGACCCTGAGCCTACGGAGTACAAATCAAACAAAAGGCCCCCAATCTAAAAAAGCGAAGAGAGAAGGCATATTCCAAAAGGATTTGTGTAAACTGTAAAGCACTCCATTTATTGGAGGTTGTATACTGAATGTTTTCACAAGTTGGTAGTTGATGCATGCTAACTTTATACAAGAATGAAGGGAAAACTGTATTTAAAATCACAAGCTCTATTATTGATTTATTCAGAACTCAAAATATCTCATTTCTGTTGAATATTTGTAAAATTATTAACTTGACTTTAAATGCACTGTTCATCCCATGCTAACTCCCCCCTCCCCGTGGTTCCATTTACTTTCTTTGTGTGTCACAATTGGCTGCTCTTGTTGCTCTTCCCTTTATGTTTTTTTGCTTCTTTTGATAAACTCCTTTATTTTTTTTATTTATTTTTTATTTATTTTTAAATTGTGCTAGTTTTGGAAATTTACTTGATATCTGATGGTAAATTCAAGTAGTAATTGCATCAATATCTTTCTATGGCTCTAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGTGGTAAATGTCCTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGGTACAATCTAATGCTCGTGTAAATTCCTCAAGGAGTTCAGTTATGCAAGTGTTTGATCTTGATGCACATTGATCGTACAAAGATAAAATCTTTTTTTGTTGGGACTAGAATGGAAGGAATTGTTTGGGCGCTCTTTTGAAAACAACTCTCTTTTTTTAAAATAAAAATATTAGTGAAAACATGTTGGCTTAATTAGTTCTTACAGGTTGGTTTCTTTTAGTTTGTTTTTAAAGGTGATTTGATTCTTACAACAATTGAAATTATTTTTTCTAAAACTATTGTCTTGCAAATAATGATTAAGTCCTCCCGGGTATAGGGGAGCAAACCTCCGACTCCTGGTTATCAAAAAAAAAGAAAAGAAAAAATGATTAAGTGCAGAACAAGGTTAATCTTTATGAACCTTCTCCTTACAGTTTTAAAATTAAAAGCAGACAGCTGCTTTTCAAGATGGCTTTCAGGATTCATATTTGATTTTTTTTCCTCTTGTATTTAATTCATTTACTTCAATGCGGAAAATAATGACCTTTGCAAAGCCTGCCAGGAGTTGGTAAGGCAAAAAAAATGTGGATTTCTGGGGCACTTTATCGTGTCATTAACCAGCATGCACATTATCTTTGTGCTCTTTTATGTAGACTTCTTTTCTTGTTACTTTTTGATCGAGGTGTAGCTGGATGCTTGGTTCATGATACATTTTGTAAAGACTAAATCATGAACGATAGGGCCTAAGAAATATAAGAAAATGATACATGATTTGGAAACTATCATTGAATTGTGTTATCCTCTACCACCTATATCTACTTTCATGTCTCCTGCTCTAAAAATTCAATTGTTTGCAGTTCCTTTATCATTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGTAGTATGACCTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCTGGGATGGAAGATTATAAAATTAGTATGTTCACCCACTGTTAAGCTAAGTTTTTCCAATGTGTTTACTTTTCACACTTTCCATCTGATTTACGCTTCTTCTAAAAACCTTTGCTTGCACAGATTTACAGAAGATCATCGAACAAGCTCAAATCGATGAGGTTTCTCCTTCCCTCTCATTTATTTAGTGAAAATATACCTTTGTTCTCTAACATTTGAGAAATGACGTGTCTTCATACCGGAATTTTGAAAATGGCGTTGCGCAATCAGTTGATTGAAATTTTTAATCTGAGCTAGTTTGTTTCTAGCGAGCACAATTCTTCTCTTATCCCTTGCACTTACAGAGACGGAATAGTTTATAATGAACTAACTTTAGTTTTCTTGATTGCAGGTTGAATCAGTTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGGTAAGGTGTTTTTGGTTGGTCGGTTGCACTCAAGGTTGTCTAACTACCAAAAAAGCATGCATGCATGTGTAATATACCTTTCATTTTATCTAGAAATGTATATAACTTACACGTGAATGCAACTAATACATAATTTAACATTCATATATAATTATGCAGTTGATTTTAAAATTCAACTTGAGCAATAAATTGAGTAAAAAACTAATAATATAATAGGTTGACCTTACCATTAGTTGTCTTGTTTTAATCTTGTGAAGATGACATGAAATTGTTATTTTTTATTCTTAGTATTCTGGAATTGGCTATTTGTATTAAAAAAATCTTTATTTAATTTACAGATATTCCATGTCTTTTTCTGTAGATTTCTGATAGTGCATTTGTCGATAAGAACGAGGCGCCTAAAATTCTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGGTAAACATCTTTGCTCTTTATGCATGTGTTTTTGCATCAAAATCCATATATTTACGTACATGAGGATACCATACCCTTTTTTTCCCGATAAGAAGCATGACATTATTCATTGATAGATTTGAAAAACACAAAGTGGGACCATGGAGGAAGCAAGGATACCATACTGGATTGCTTGTTTGAATCTTATGGCATTGGACGTATAGGTTTTCACCATGTTACTTAAATGCTCAAGATAATTGTGTGTAATCAGATATTGGACATAACTAGAAAAAATATTGAAAGGATAGTTAATGTTTGTTCAGGTATCATTATGTTTTCTTATCAGAATTGGTTGTAGTTTAATTAGCAACTCTGTGCACATCTTTGATTTCAATTTTCTTTATAGACTTGTATGCATGTACAAATCTAATTCGTTTTAGTGTTTGCCAGTCCTTATCTTTTTTTTTTTTTTGTTGTTTGGGGGCATTTACGTATCTATAAAGCCTGTATCATACCATAAGAATGTGTTTTGTCTTTGTTTGTTCATTACTGTGTATCATCTAGTACCTACACTGGCTAGCCATGTCTTTTACTGCTTGCACGATGTACATTGTTAATCTTTCAGGGGACATTTTGGGCATCGTAGTAACAATTTGTCTTTGTTGCAGAAAGTAGCTCTAACAGTACCTAGATATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGGTTAATGTGTATAACATTATACTAAATTCGTAATATGCATCCCAAAGACATTAGGCTCATTTAGATTTCTTTAACAGAGATATGGACCGAGTATGCTCTTGATCACTGATCAGAGAGCTTTAACCTCAGTCATCTTATTCACGTATTTCCCACTAGAAGAAATCAAGTCATTACTTTTTGATGTGGTGTATCATATGGCAGAACCTAAAGTTGCAGTTATCCTACTGGTTTTACTACATCTAAGATTCCAAATACAGCTTGCTTCCTAATTTTTTATCAATACTGTCTATAAACCCAGTTTTTTGCTGAATGATAGAATACTTGTAATGTAAATCGTTAACTCACCAATCAACCCAAAAGGTTAAGCTGATAGGTTATGGTAAATTTAATTACATCAACACTAGTCTAACACTCTCCCTCGGATTTAAAAATTTGAATAAAAGCCAAACAAGAGAAAACCAATATTAATTGGGGAGAAAACAACTTTATAGGGGTTTGAACACATGAGTTTTTGCTCTGATACCATGTTAAATCAGCAATTAACCACAAAGCTTAAGCTGATAGGTTATGGTAAATTTAATTATATCAACACTAGTTTAACAAAGCAAAACCCATTTTGTATAATCACTCTTTTAAGCTTATTCTTTACAACGTTTGTCTTAGTTTGATCATTGTGGTTTTTGCCTGTGTCCTTACAAAACTAGAATTGCTATTGCAATTACTTAAAAAATAGTATTGGAATGAAGATCTTCTGGTGATTATTCCTTTCATGAGTTTGCAGACGTGTTCGAATACTGACTTCTTTGCTATGGCTACTCTTGCAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGGCCGCTCGAGAAAAGATATAATCGTCTGAGGAATATCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTTTAAAGGAAGGATTTAGATCAGTGGCTCTTTGAAAAGTGAATATGGAGGAAGCCTTGCCCATCTTTCAGACTTGAGAAAAATGTTGTGGTTAGCAGTTTTTTTTTCCTCCCATTAGTATTCAAGAATTTCATCTTCCTTCCAATAAATATTGTTTGATTGAGGTCAATTATGGAATATGGCATATGGCTTTCCTGAGTATACCTTTTTTTTCATTAAATAAATATTTTTAATGTATCACATCA

mRNA sequence

CGAGTTTCTTTTGCCCCATTGCCATCCGGCGTCCGCCTTCCCCCACTCGCTTCATCAACCAGTCGTTCTCCTGCCATGGCTTTAGACCTTCTACAGAACAATCTTCGCTCATCTTTTTTCCACCGGAGCTCGAGTTCTTAAGCCACACGCCTCTCTATTTCTCTCTTAACGAATCTTTACTCGGTTGAAACGAAGATTTTCGTTGATTCAAAGTGTCTACACTCTAGTTTCTGCTGAGTCAGTGCTTTCTGACCTTATACTCCGTCAATGTCAATTCTAATTACTTAAGAATACTTGATATCCTAGACGCACGGCAATCTTAAAGAAGACAATCATGGTGATGACTCAGTACGGCATCAAATATGCCGTTCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGAAAGTGTGCGAAACCCTGCTCCGAAAGGGGCCTCTGACATTGAGACTTCTTATACGATTCACGGAACTTAGTTCATCACAGGTCAACAACTCCCTTCTCATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTTGGAGACGCACCCAAGGCTGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCGGAAAAGCTTGAGAAAGATAAAGATTGTGAAGAACTTCTCGAGGGTCTGCTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACGTGCAGGAAACCGTCCTATTCCAGATGCCGTACATGAAAGTCTATTTAAACTTCTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAACAGCCTCCGCCCAAAAAAAGGGGTGCTAAGGCTGCCAAGGTATCTGAGGTGCCAGCAACCTTAGAACAGCGTCTTATAGAAGCAGCACGTCCAATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAAAGAGTGAACATCATTCACCAATTTCTGGACAGAAGCGCAAGCGCGGTGATCTGGAGATGGTACAAGAGTCTGGAGATGCAGATGCTATTATTGTTTGGCGTGCGAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGTGGTAAATGTCCTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTATCATTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGTAGTATGACCTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCTGGGATGGAAGATTATAAAATTAATTTACAGAAGATCATCGAACAAGCTCAAATCGATGAGGTTGAATCAGTTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCTGATAGTGCATTTGTCGATAAGAACGAGGCGCCTAAAATTCTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGAAAGTAGCTCTAACAGTACCTAGATATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGGCCGCTCGAGAAAAGATATAATCGTCTGAGGAATATCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTTTAAAGGAAGGATTTAGATCAGTGGCTCTTTGAAAAGTGAATATGGAGGAAGCCTTGCCCATCTTTCAGACTTGAGAAAAATGTTGTGGTTAGCAGTTTTTTTTTCCTCCCATTAGTATTCAAGAATTTCATCTTCCTTCCAATAAATATTGTTTGATTGAGGTCAATTATGGAATATGGCATATGGCTTTCCTGAGTATACCTTTTTTTTCATTAAATAAATATTTTTAATGTATCACATCA

Coding sequence (CDS)

ATGGTGATGACTCAGTACGGCATCAAATATGCCGTTCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGAAAGTGTGCGAAACCCTGCTCCGAAAGGGGCCTCTGACATTGAGACTTCTTATACGATTCACGGAACTTAGTTCATCACAGGTCAACAACTCCCTTCTCATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTTGGAGACGCACCCAAGGCTGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCGGAAAAGCTTGAGAAAGATAAAGATTGTGAAGAACTTCTCGAGGGTCTGCTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACGTGCAGGAAACCGTCCTATTCCAGATGCCGTACATGAAAGTCTATTTAAACTTCTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAACAGCCTCCGCCCAAAAAAAGGGGTGCTAAGGCTGCCAAGGTATCTGAGGTGCCAGCAACCTTAGAACAGCGTCTTATAGAAGCAGCACGTCCAATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAAAGAGTGAACATCATTCACCAATTTCTGGACAGAAGCGCAAGCGCGGTGATCTGGAGATGGTACAAGAGTCTGGAGATGCAGATGCTATTATTGTTTGGCGTGCGAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGTGGTAAATGTCCTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTATCATTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGTAGTATGACCTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCTGGGATGGAAGATTATAAAATTAATTTACAGAAGATCATCGAACAAGCTCAAATCGATGAGGTTGAATCAGTTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCTGATAGTGCATTTGTCGATAAGAACGAGGCGCCTAAAATTCTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGAAAGTAGCTCTAACAGTACCTAGATATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGGCCGCTCGAGAAAAGATATAATCGTCTGAGGAATATCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTTTAA

Protein sequence

MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSPQVEEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPISGQKRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVALTVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF

Homology

[Close]

BLAST of Tan0016391 vs. ExPASy Swiss-Prot
Match: Q9BUI4 (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-25
Identity = 126/496 (25.40%), Postives = 219/496 (44.15%), Query Frame = 0


Query: 3   MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T  S  QV  +L +L+QH
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60

Query: 63  NCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEG 122
           N V          +    +   +Y A  S +L  +R+ +++   ++ L  D   E ++E 
Sbjct: 61  NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYI-YTTKTLYSDTG-ELIVEE 120

Query: 123 LLQNGRLSMEQII----ERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+L+M  ++    +R   +   G       V  +  +L + HFV+RCP+  PT   
Sbjct: 121 LLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-VPTTEN 180

Query: 183 QVEEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPIS 242
                PPP    A    ++E    L  +L    +         G+    +++     P  
Sbjct: 181 SDPGPPPP----APTLVINEKDMYLVPKLSLIGK---------GKRRRSSDEDAAGEP-- 240

Query: 243 GQKRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFD---DGVVNVLS 302
             K KR       +    D  I W+AN D F +  R +A +  V ++ D     +V  + 
Sbjct: 241 --KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML 300

Query: 303 AILEATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALG 362
            + E T SS        T PLS + I+        + K  + + +TL  D     +   G
Sbjct: 301 RMSEITTSS----SAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSG 360

Query: 363 CSGMEDYKINLQKIIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFV 422
            SG   Y INL K +       +ESVV +R+G    R+FR + +    +E +++ D A +
Sbjct: 361 DSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH-IEQKQVEDFAMI 420

Query: 423 DKNEAPKILYRLWKDEYLYMEKVALTVPRYS---LCLLWRVDRYNLWEHVLDEMYHASLN 481
              EA  +LY++  + ++ ++++  T P ++      L+ V+  +    +L   Y +  N
Sbjct: 421 PAKEAKDMLYKMLSENFMSLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSIAN 461

[Close]

BLAST of Tan0016391 vs. ExPASy Swiss-Prot
Match: Q2TBL4 (DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.9e-25
Identity = 128/495 (25.86%), Postives = 221/495 (44.65%), Query Frame = 0


Query: 3   MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T  S  QV  +L +LIQH
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60

Query: 63  NCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEG 122
           N V          +    +   +Y A  + +L  +R+ +++  A + L  D   E ++E 
Sbjct: 61  NLV---------TYQVHKRGVVEYEAQCNRVLRMLRYPRYIYTA-KTLYSDTG-ELIVEE 120

Query: 123 LLQNGRLSMEQII----ERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+++M  ++    +R   +   G       V  +  +L++ HFV+RCP    T + 
Sbjct: 121 LLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCPLVPATENS 180

Query: 183 QVEEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPIS 242
                PP     A    VSE    L  +L    +     R S  E  T   K++      
Sbjct: 181 DTGPPPP-----APTLVVSEKDMYLVPKLSLIGKGKR--RRSSDEDATGEPKAKR----- 240

Query: 243 GQKRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL 302
             K+   + E + + G     I W+AN D F +  R +A +  V ++ D     ++  +L
Sbjct: 241 -PKQTTDNKEPIPDDG-----IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML 300

Query: 303 EATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGC 362
              R SE    +    T PLS + I+        + K  + + +TL  D     +   G 
Sbjct: 301 ---RMSEVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 360

Query: 363 SGMEDYKINLQKIIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 422
           SG   Y INL K +       +ESVV +R+G    R+FR + +   L E +++ D A + 
Sbjct: 361 SGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIP 420

Query: 423 KNEAPKILYRLWKDEYLYMEKVALTVPRYS---LCLLWRVDRYNLWEHVLDEMYHASLNL 481
             EA  +LY++  + ++ ++++  T P ++      L+ V+  +    +L   Y +  NL
Sbjct: 421 AKEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSVANL 461

[Close]

BLAST of Tan0016391 vs. ExPASy Swiss-Prot
Match: Q5XIL3 (DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Polr3c PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-23
Identity = 120/495 (24.24%), Postives = 216/495 (43.64%), Query Frame = 0


Query: 3   MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T+ S  QV  +L +LI H
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60

Query: 63  NCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEG 122
           N V          +    +   +Y A  S +L  +R+ ++  I + K       E ++E 
Sbjct: 61  NLV---------IYHVHKRGVVEYEAQCSRVLRMLRYPRY--IYTTKTLYGDTGELIVEE 120

Query: 123 LLQNGRLSMEQII----ERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+++M  ++    +R   +   G       V  +  +L + HFV+RCP     L P
Sbjct: 121 LLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVP 180

Query: 183 QVEEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPIS 242
             +   P     A    ++E    L  +L    +         G+    +++     P +
Sbjct: 181 DTDSSDPGPPPPAPNLVINEKDMYLVPKLSLIGK---------GKRRRSSDEDAAGEPKA 240

Query: 243 GQKRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL 302
            + R   + E   + G     I W+ N D F +  R +A +  V ++ D     ++  +L
Sbjct: 241 KKPRCTDNEEPTPDDG-----IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML 300

Query: 303 EATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGC 362
              R SE    +    T PLS + I+        + K  + + +TL  D     +   G 
Sbjct: 301 ---RMSEITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKAGD 360

Query: 363 SGMEDYKINLQKIIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 422
           SG   Y INL K +       +ESV+ +R+G    R+FR + +   L E +++ D A + 
Sbjct: 361 SGGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIP 420

Query: 423 KNEAPKILYRLWKDEYLYMEKVALTVPRYS---LCLLWRVDRYNLWEHVLDEMYHASLNL 481
             EA  +LY++  + ++ ++++  T P ++      L+ V+  +    +L   Y +  NL
Sbjct: 421 AKEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANL 460

[Close]

BLAST of Tan0016391 vs. ExPASy Swiss-Prot
Match: Q9D483 (DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.4e-23
Identity = 118/493 (23.94%), Postives = 216/493 (43.81%), Query Frame = 0


Query: 3   MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T+ S  QV  +L +LI H
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60

Query: 63  NCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEG 122
           N V          +    +   +Y A  S +L  +R+ ++  I + K       E ++E 
Sbjct: 61  NLVL---------YHVHKRGVVEYEAQCSRVLRMLRYPRY--IYTTKTLYGDTGELIVEE 120

Query: 123 LLQNGRLSMEQII----ERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+++M  ++    +R   +   G       V  +  +L + HFV+RCP    T S 
Sbjct: 121 LLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPDTDSS 180

Query: 183 QVEEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPIS 242
             +  PPP    A    ++E    L  +L    +         G+    +++     P +
Sbjct: 181 --DRGPPPP---APTLVINEKDMYLVPKLSLIGK---------GKRRRSSDEDATGEPKA 240

Query: 243 GQKRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL 302
            + R   + E   + G     I W+ N D F +  R +A +  V ++ D     ++  +L
Sbjct: 241 KKPRYTDNKEPSPDDG-----IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML 300

Query: 303 EATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGCSG 362
             +  +        T PLS + I+        + K  + + +TL  D     +   G SG
Sbjct: 301 RMSEITTP-SSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDSG 360

Query: 363 MEDYKINLQKIIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKN 422
              + INL K +       +ESV+ +R+G    R+FR + +   L E +++ D A +   
Sbjct: 361 GGMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPAK 420

Query: 423 EAPKILYRLWKDEYLYMEKVALTVPRYS---LCLLWRVDRYNLWEHVLDEMYHASLNLQL 481
           EA  +LY++  + ++ ++++  T P ++      L+ V+  +    +L   Y +  NL  
Sbjct: 421 EAKDMLYKMLSENFILLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIE 460

[Close]

BLAST of Tan0016391 vs. ExPASy Swiss-Prot
Match: Q55FJ5 (DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=44689 GN=polr3c PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-15
Identity = 132/668 (19.76%), Postives = 260/668 (38.92%), Query Frame = 0


Query: 6   YGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTE----LSSSQVNNSLLILIQ 65
           Y  K A+ I+   FG+ V KV E L+++G  + +++ +       L+  ++   LL+LIQ
Sbjct: 2   YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61

Query: 66  HNCV---QAFTAVTEGEF-----GDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKD 125
           HN V   +    +T+ E      G+   +D+ Y A+  N +HR+RF KF+     K  K 
Sbjct: 62  HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYI--KHSKG 121

Query: 126 KDCEELLEGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAV----HESLFKLLNAHFVERC 185
            +   +LE L+ +GRL M+ +I++A   +R       D +     ++  KL+   F+ R 
Sbjct: 122 DEAAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRA 181

Query: 186 PAPEPTLSPQVEE--QPPPKKRGAKAAKVSEVPATLEQ-------------------RLI 245
           P P P    +         KK G   A  + V A  ++                    + 
Sbjct: 182 PRPRPVSDQETSNALSKEAKKVGGGGANGNNVGAHQKKDSDPFALPSVGFSSNGPLSSVD 241

Query: 246 EAARPMEVIRFSIGETNTE---------AEKSEHHSPIS-----------GQKRKRGDLE 305
            +A   E +    G+++T            K     P S           G+KRK  D+ 
Sbjct: 242 NSANDAESLEILTGKSSTTTIPSQPKKGTAKKTSAKPKSTAINTTATASLGRKRKSRDIY 301

Query: 306 MVQESGDADAIIV----------------------------------------------- 365
              +  + D +++                                               
Sbjct: 302 DEDDDEEPDLLVIEENVEINVNDHNSANKNSTTTTTTTTTKTGQHTLKKSKLDQSSSTTT 361

Query: 366 ----------------------WRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILE 425
                                 W  N+++FI   + KAC + V  + +     + +A+++
Sbjct: 362 TSSRQQQNGMDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQSGLLFNAMVK 421

Query: 426 ATRSSEKIVKTEITVPLSLDNIYEEVMKN-EVGRSMTLDRVEASLSAL------------ 485
             + S +  +  +T  +  +NI EE  ++ +  + M   ++E  LS +            
Sbjct: 422 LCKRSIRSNQDSLTSCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQASRPSMVTKMV 481

Query: 486 ------GCSGMEDYKINLQKIIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEK 523
                   S +  Y++N+  II   +   VES++ +++G +  R+F+ L     L+E ++
Sbjct: 482 SKSKQSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLL-LIKNLLEPKQ 541

[Close]

BLAST of Tan0016391 vs. NCBI nr
Match: XP_022968436.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima])

HSP 1 Score: 983.4 bits (2541), Expect = 7.5e-283
Identity = 498/522 (95.40%), Postives = 513/522 (98.28%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLLIRFTELSSSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSK AGNRPIPD V+ESL KLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPISGQ 240
           EEQPPP+KRGAKAAKVSEVP TLEQRL+E+ARPMEVIRFSIGETNTEAE+SEH+S ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKRGDL+M+QESGDAD II+WRANFDEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSL+NIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLENIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVES+VLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+TVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRN+RILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Tan0016391 vs. NCBI nr
Match: XP_022945853.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata])

HSP 1 Score: 982.2 bits (2538), Expect = 1.7e-282
Identity = 496/522 (95.02%), Postives = 513/522 (98.28%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTELSSSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSK AGNRPIPD V+ESL KLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPISGQ 240
           EEQPPP+KRGAKAAKVSEVP TLEQRL+E+ARPMEVIRFSIGETNTEAE+SEH+S ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKRGDL+M+QESGDAD II+WRANFDEF+RCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVES+VLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+TVPR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRN+RILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Tan0016391 vs. NCBI nr
Match: KAG6574180.1 (DNA-directed RNA polymerase III subunit RPC3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013236.1 DNA-directed RNA polymerase III subunit RPC3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 980.3 bits (2533), Expect = 6.4e-282
Identity = 496/522 (95.02%), Postives = 512/522 (98.08%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTELSSSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSK AGNRPIPD V+ESL KLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPISGQ 240
           EEQPPP+KRGAKAAKVSEVP TLEQRL+E+ARPMEVIRFSIGETNTEAE+SEH+S ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKRGDL+ +QESGDAD II+WRANFDEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVES+VLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+TVPR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRN+RILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Tan0016391 vs. NCBI nr
Match: XP_023541704.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 979.9 bits (2532), Expect = 8.3e-282
Identity = 495/522 (94.83%), Postives = 512/522 (98.08%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTELSSSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSK AGNRP PD V+ESL KLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPSPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPISGQ 240
           EEQPPP+KRGAKAAKVSEVP TLEQRL+E+ARPMEVIRFSIGETNTEAE+SEH+S ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKRGDL+M+QESGDAD II+WRANFDEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVES+VLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+T+PR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRN+RILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Tan0016391 vs. NCBI nr
Match: XP_038878061.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_038878062.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida])

HSP 1 Score: 942.6 bits (2435), Expect = 1.5e-270
Identity = 472/522 (90.42%), Postives = 508/522 (97.32%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILI 60
           MVMTQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLLIRFTEL+SSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELTSSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSN+LHRMRFSKFLAIASEKL KDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNVLHRMRFSKFLAIASEKLRKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERA+SSK AGNRPIPD VH+SLFKLLNAHFVERCPAPEP+LSP+V
Sbjct: 121 EGLLQNGRLSMEQMVERAQSSKHAGNRPIPDIVHDSLFKLLNAHFVERCPAPEPSLSPKV 180

Query: 181 EEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPISGQ 240
           EEQPPPKKRGAKAAK+SEVP TLEQR++E+ARPMEV+RFS+G+TNTEAEKSEH+S ISGQ
Sbjct: 181 EEQPPPKKRGAKAAKISEVPETLEQRVVESARPMEVLRFSMGDTNTEAEKSEHYSQISGQ 240

Query: 241 KRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRK  DLEMVQ+SGDAD++I+WRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
Sbjct: 241 KRKHDDLEMVQDSGDADSVILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS+LGC GM+DY+INL+K
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSSLGCPGMDDYQINLRK 360

Query: 361 IIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVES+VLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVALTVPR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEME++KELL
Sbjct: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF 523
           +LPPD R  PL KR++RL+ +R LL+SSLLKLDDALMLFHDF
Sbjct: 481 SLPPDNRNEPLMKRFDRLKKVRGLLQSSLLKLDDALMLFHDF 522

[Close]

BLAST of Tan0016391 vs. ExPASy TrEMBL
Match: A0A6J1HUV1 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita maxima OX=3661 GN=LOC111467684 PE=3 SV=1)

HSP 1 Score: 983.4 bits (2541), Expect = 3.6e-283
Identity = 498/522 (95.40%), Postives = 513/522 (98.28%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLLIRFTELSSSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSK AGNRPIPD V+ESL KLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPISGQ 240
           EEQPPP+KRGAKAAKVSEVP TLEQRL+E+ARPMEVIRFSIGETNTEAE+SEH+S ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKRGDL+M+QESGDAD II+WRANFDEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSL+NIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLENIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVES+VLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+TVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRN+RILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Tan0016391 vs. ExPASy TrEMBL
Match: A0A6J1G256 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LOC111449973 PE=3 SV=1)

HSP 1 Score: 982.2 bits (2538), Expect = 8.1e-283
Identity = 496/522 (95.02%), Postives = 513/522 (98.28%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTELSSSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSK AGNRPIPD V+ESL KLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPISGQ 240
           EEQPPP+KRGAKAAKVSEVP TLEQRL+E+ARPMEVIRFSIGETNTEAE+SEH+S ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKRGDL+M+QESGDAD II+WRANFDEF+RCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVES+VLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+TVPR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRN+RILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Tan0016391 vs. ExPASy TrEMBL
Match: A0A6J1CHB3 (DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=LOC111011656 PE=3 SV=1)

HSP 1 Score: 936.4 bits (2419), Expect = 5.1e-269
Identity = 477/522 (91.38%), Postives = 499/522 (95.59%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILI 60
           M  TQ GIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTEL+SSQVNNSLLILI
Sbjct: 1   MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT+VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLA+ASEKLEKDK+CEELL
Sbjct: 61  QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERAKSSK AGNRPIPD VHESLFKLL AHFVERCPAPEP LS QV
Sbjct: 121 EGLLQNGRLSMEQLVERAKSSKHAGNRPIPDVVHESLFKLLTAHFVERCPAPEPILSAQV 180

Query: 181 EEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPISGQ 240
           EEQPPPKKRGAKAAK+SEVP TLEQRL+  ARPMEV+RFS+ ETNTEAEKSE   PISGQ
Sbjct: 181 EEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMEVLRFSMSETNTEAEKSE--LPISGQ 240

Query: 241 KRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRK  +LE VQESGDAD II+WRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
Sbjct: 241 KRKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEK VKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC GM+DYKINL+K
Sbjct: 301 TRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCPGMDDYKINLRK 360

Query: 361 IIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQI+EVES+VLKRYGRDAYRMFRFLS+TGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVALT PR+SLCLLWRVD+YNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF 523
           +LPPDKRGGPLEKRYNRLRN+RILLESSLLKLDDALMLFHDF
Sbjct: 481 SLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 520

[Close]

BLAST of Tan0016391 vs. ExPASy TrEMBL
Match: A0A1S3AYY3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC103484083 PE=3 SV=1)

HSP 1 Score: 891.7 bits (2303), Expect = 1.4e-255
Identity = 447/522 (85.63%), Postives = 489/522 (93.68%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILI 60
           MVMTQYGIKYAVHI+TAHFGNLVAKVCETLLRKGPLTLRLLIRFTEL+ SQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLAIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERA+SS RAGNRPIPD VH+SLFKLLNAHFVERCPAPEPTLSP+V
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPISGQ 240
           EEQPPP+KRGAKAAK+ EVP TLEQRLIEAARP+EV+RFS+G+TN EAEKSEH+S ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRK  +LE+ Q+SG AD  I+WRAN+DEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC GM+DYKINL++
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           I+EQAQ DEVES+VLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+TVPR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+E++KELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF 523
           +LP D    PL K+ +    +R LL SSL+KLDDALMLFHDF
Sbjct: 481 SLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDALMLFHDF 522

[Close]

BLAST of Tan0016391 vs. ExPASy TrEMBL
Match: A0A0A0LBF3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3G182170 PE=3 SV=1)

HSP 1 Score: 890.6 bits (2300), Expect = 3.2e-255
Identity = 451/522 (86.40%), Postives = 489/522 (93.68%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELSSSQVNNSLLILI 60
           MVMTQYGIKYAVHI+TAHFGNLVAKVCETLLRKGPLTLRLLIRFTEL+ SQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT VTEGEFGDAPK DT YLALFSNILHRMRFSKF+AIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERA+SS RAGN PI D VH+SLFKLLNAHFVERCPAPEPTLSP+V
Sbjct: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFSIGETNTEAEKSEHHSPISGQ 240
           EE PPP+KRGAKAAK+SEVP TLEQRLIEAARP+EV+RFS+G+TN EAEKSEHHS ISGQ
Sbjct: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240

Query: 241 KRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRK  DLE+ Q+SGDAD  I+WRAN+DEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
Sbjct: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC GM+DYKINL++
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQ DEVES+VLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVALTVPR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+E++KELL
Sbjct: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF 523
           +LP D    PL K+ +   N+R LL SSL+KLDDALMLFHDF
Sbjct: 481 SLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521

[Close]

BLAST of Tan0016391 vs. TAIR 10
Match: AT3G49000.1 (RNA polymerase III subunit RPC82 family protein )

HSP 1 Score: 462.6 bits (1189), Expect = 4.2e-130
Identity = 256/536 (47.76%), Postives = 373/536 (69.59%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTE--LSSSQVNNSLLI 60
           M M+++GI YA+HIIT  FG++V+KVCE LLRKGPL+ R + R  E  ++ ++V + L +
Sbjct: 1   MSMSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYL 60

Query: 61  LIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEE 120
           LIQHNCVQAF+   E   G   KA  QY+ LF+NILHR+R++KF  I +E+L  D  C  
Sbjct: 61  LIQHNCVQAFS--IEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEEL--DSKCGA 120

Query: 121 LLEGLLQNGRLSMEQIIERAKSSKRAGNRPIPDAVHESLFKLLNAHFVERCPAPEPTLSP 180
           +L+GLL NGRL++ Q IER + S   GN    +A+ +SL KL+ A FVER P+PEP L  
Sbjct: 121 VLDGLLSNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLGN 180

Query: 181 QVEEQPPPKKRGAKAAKVSEVPATLEQRLIEAARPMEVIRFS-IGETNTEAEKSEHHSPI 240
             +E+ P K+RGAKAAK+ + P TLE++++EAA P++ IRF  I E ++ +  ++ +S I
Sbjct: 181 --KEKEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSNI 240

Query: 241 SGQKRKRGDLEMVQESGDADAIIVWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAI 300
           +  KRK+ D+    ++ D+ + ++WR NF+EFI  LRHKAC+E V+ + D+G   VL A+
Sbjct: 241 TEGKRKQRDV----DTSDSSSGVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAM 300

Query: 301 LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGM------ 360
           LE  RS EK VKT+ + P+S+ +IYEEV+K E GR+M  +RVEA L  L  +        
Sbjct: 301 LEVGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFV 360

Query: 361 ----EDYKINLQKIIEQAQIDEVESVVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFV 420
               + Y ++ + II  AQ DE+E+VV++RYG++A+RMFR+LS+ G  VET+KI+D+A  
Sbjct: 361 NEVNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALT 420

Query: 421 DKNEAPKILYRLWKDEYLYMEKVALTVP-RYSLCLLWRVDRYNLWEHVLDEMYHASLNLQ 480
           +K + P+ L ++WKD YL+M+K+A+T P  Y+  LLW+V++  +   +LDEMYHASLNL 
Sbjct: 421 EKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYHASLNLS 480

Query: 481 LRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNIRILLESSLLKLDDALMLFHDF 523
           LR A+E+E +KELL LP DK  GPL++R  +++  R+LL S++ KLDDA+MLFHDF
Sbjct: 481 LRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFHDF 523

The following BLAST results are available for this feature:

BLAST of Tan0016391 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9BUI4	1.6e-25	25.40	DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C P...	[more]
Q2TBL4	7.9e-25	25.86	DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=...	[more]
Q5XIL3	1.5e-23	24.24	DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Po...	[more]
Q9D483	7.4e-23	23.94	DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c ...	[more]
Q55FJ5	1.9e-15	19.76	DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=4468...	[more]

BLAST of Tan0016391 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022968436.1	7.5e-283	95.40	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima]	[more]
XP_022945853.1	1.7e-282	95.02	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata]	[more]
KAG6574180.1	6.4e-282	95.02	DNA-directed RNA polymerase III subunit RPC3, partial [Cucurbita argyrosperma su...	[more]
XP_023541704.1	8.3e-282	94.83	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo]	[more]
XP_038878061.1	1.5e-270	90.42	DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_...	[more]

BLAST of Tan0016391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HUV1	3.6e-283	95.40	DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1G256	8.1e-283	95.02	DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1CHB3	5.1e-269	91.38	DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S3AYY3	1.4e-255	85.63	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A0A0LBF3	3.2e-255	86.40	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]

BLAST of Tan0016391 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49000.1	4.2e-130	47.76	RNA polymerase III subunit RPC82 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008806	RNA polymerase III Rpc82, C -terminal	PFAM	PF05645	RNA_pol_Rpc82	coord: 156..338 e-value: 1.5E-17 score: 64.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 265..357 e-value: 1.5E-7 score: 34.0
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 3..76 e-value: 2.4E-23 score: 84.1
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 358..446 e-value: 7.9E-20 score: 72.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 91..176 e-value: 1.1E-20 score: 75.4
IPR013197	RNA polymerase III subunit RPC82-related, helix-turn-helix	PFAM	PF08221	HTH_9	coord: 10..69 e-value: 1.6E-22 score: 79.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..245
IPR039748	DNA-directed RNA polymerase III subunit RPC3	PANTHER	PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	coord: 3..522

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016391.1	Tan0016391.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding