Tan0016373 (gene) Snake gourd v1

Overview
NameTan0016373
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionsuccinate dehydrogenase subunit 6, mitochondrial-like
LocationLG09: 57198766 .. 57202097 (+)
RNA-Seq ExpressionTan0016373
SyntenyTan0016373
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAAACACAAAAACAAAACGAGCTTTCAAGAAGGAGATTGCAGAGCTAGAACTAGAAGAGAAGAGAAGGGAAGAGAACAGCCATCAGGATTTTGCTTTCAATCGGATTAGTTTCTAAATTCTCAATCCTAATCTGTTTTTGTTTTTCGGCGCTACAATTATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAATTTTGGTCCGAGAGATTCTCCATCCTCGACAACTATTCCCCTTTTGTCCAGCGCGAGAAGCCCCTTCCTCCATGGTCTAGCTCCGATGTCGAGGAGTTCATTGCTTCCGACCCTGTTCATGGCCCCGCTGTAATTCATCTTCCATTTTTCTTTTCTTTTACTTCCATTACTACCTGCTCTGCTCTGCTATGCTAGTGAGTTATGTTCTGTCATCGAGTGTTTCAACTTCGAGATGTGGGGTTGCGGATCAAACTGTTTAATCATCTTCTTTTACTGTGTTTGTTGTCTTATTCTTCTTCAGCTTTGTTAGGATGCACATATATCTCGTTTATTTTACTAGTTTGTTTTCCTGATCGATGTGTGATAGTTCGAGTTTCGGATGATCTCATCTGGGTGAGTGAGTGAGAGAGAGAGAGATAGACAACACCACCTCACACGTTCCCCCCACATTTAAATTGACCTTTGAGGGCGAGCAAGTTTCAATTTCAGATTTATTATTATTTGATTGGCATATCTGAAATTAAATGTGTTCATTTACTCTTTCTCCTGGAGATTTGGTAGTAGAGTTGGAGGTCAATGAAAATGATTGTTTTTCCATTGAGTTTGGGATCATCTAAAACTTCATAGCCCAATGATTGTTGTGCAGTATGGCTTTGAAAATGTTTGAAGGAAATTCTGAGTCAGGCCTTGAACTTTTCAATTTTTGTTCTGGTGCGGTGAAAAGTGTGATTATTAGTAGGGAACTGGACCAAATATTTCCTTTTAATATGGTTTCTTTGATCAACAGTTGGATCACACTAAATGCTGCCCATTACATAAGTACTTAATAATGATCTTTTGAAATTGTTTTTGTCATAATAAGTGAAATAATGTTTTCCTTTTCCTTTTCTTTTCTTTTTCTATCCTTCGTGATTGGAATATTATCATTCTTACAATCAAATTTATGTGTTCTATTTAACTCTTTTTCCTGGTTTGTTTAACTTCATTGTTCACTCATAATATATTGCAAACCTCTTTCACAGGGATGGAATCAATTGCTTTTTGGTATAGTACCTATGAACTGTATTGGTAGATGATAGTAACCATTCTGATTAATAGAACCTTGTAGCACACCTATTTTCCTGTGATTTTCCTGCCAAGACTTTTCTGCTTTTATATTCTCTCCCTGGTCCTGTTATGTCCTGGTTTTAGGTCTTTTTGGCTGATTATCTCTATGTTCACTGCTGTCTAACTTTCAGTTATTGTTTGATTTTATCATTTTTATATGCAAAAGTAGTTTTCAGTTTATTTTTAGTTATTATCTAGACTATTATACTGTCTGTAATGCTAACTAGATCATGGATTGATTGTATGATCTCCCTTGCTTTCTTAAGTTGAACTACTTGGCCTGGGTGCCTGCTCTACTTTTTTTTCATTAGTGCATTCCTACATATTCTTCCAGATGAAATTTCAATAATTATGTTAAAGTATTGATATAATTAAATTTACCATAACCCATCAACTTAAACTTTTTGGTGATTTAGTAAATTACTTAAACAGCCTATCTCCTTAGAGGCTGGCGGGCTAAGAATGGTTGTCATTTAGTTTCACATTTTTTCATACATAGTAGGAAGACAGAGGCAGATAGAACTTTCTGTAATTAAGAGTTCTCGTACATTCCCTTTAGATTCCTCATTTTAAGCTGCTCATTATTTCTTTTTCAGTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTCTTACAGGTAGTGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAGAAGTTTGCATGGTATTCAACTTTCTTGTCTTTCCACTTAACTGCTTAATATCAATAAATGAATAGCTGTAGCTTTCAAATTATTCTTTTACTTTACGACTGTCACTGCATGATTCAACAATCTGAAATATCTGCGGTCCTGTCTCATGAGTTTAAATTCCTTTTTCCTTGTGTCCATTTTTATGCAAGTCCAATATTTTTCTCAACCAATGCAGCACATTTTTCTTATCATCAACTAGAACCTTGCATGATACTGAACTATGTTCATAACTCGATTAGGTTATGAGTTTGGTTGACATGAATGTATTCTGGCTTAAAATAATTCCTAATTTATTTAATAAGATGATAGTTTCAATTACTTTACGAGTCTCAAGTTGAAATGTAATGTCCTTTCACCTTTGATAGAATACTGAGGTCCTCAAGACTCAAAATCTTGAGTCCCAATCTTAAAAGAGTTTAGGAGCTGGCTTTATATGTCAAGATATTGGGAAACCTTTTTTCATGCTTAAATTTGCGTCAAAGCAAGCCACAAGACACAATAAGCCTAACTAGCTTGTTAAAGACGCGTAAAAGGCTCGTAAAACATTTGCTTGCTTACCGTGTAGCTGTGTTTTGACAGGCGCTGGGCTGTCGTTCCTAGCGGGAGGTGTATTCGGTTGGACTTTTGGCCATGAGATTGCAAATCATTGGTATCAACTCTACAGGGTGGACACAATGGGTGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAATGAGGGACGTTTTTAAACTCTGATTTGCAGTTGAAGCAGCACTCATATCGCTGCTGCTTTCTAAAATAAAAATCAAGTGCAACTTTGTTGAAATACAATGGTTGATTGGTTTGTTTTGCACTGAACTCTTCCAATCCAAGTTTTATCTTCTGGAAATGACTGAATTCATTTGCAAGCTTGTGTTACAAATGTAGTCATCTTTGCCAAATACCTCCAATCCTGGGTGTTAAGGTCTAATCTAAAGCATCAGTTCTTGGCCCAAAATAAATTCACTTGTCTTGTTGAACCAATATATTTATATTAGCTTAGAATCAGAGGCCACAAAATTAAGCCTTACCTGAACAAGATCTATTCCATAGATAGTACGATTGTGTCCTTGAGTGCTAAGAATAACACTCCAGCCTTCTTTCCACTCTATAATTTTGATAGCACGTTCAAATAATTGTATTTGGGTTATTTAATTTAACAATGTTAATATATCTATATATTAAATTGAAAACATACTTATGTTAACAAATGTGGAATGTTTAGAGAATATCTTACTTTCATTTATAGAAGCCGGA

mRNA sequence

CACAAACACAAAAACAAAACGAGCTTTCAAGAAGGAGATTGCAGAGCTAGAACTAGAAGAGAAGAGAAGGGAAGAGAACAGCCATCAGGATTTTGCTTTCAATCGGATTAGTTTCTAAATTCTCAATCCTAATCTGTTTTTGTTTTTCGGCGCTACAATTATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAATTTTGGTCCGAGAGATTCTCCATCCTCGACAACTATTCCCCTTTTGTCCAGCGCGAGAAGCCCCTTCCTCCATGGTCTAGCTCCGATGTCGAGGAGTTCATTGCTTCCGACCCTGTTCATGGCCCCGCTTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTCTTACAGGTAGTGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAGAAGTTTGCATGGCGCTGGGCTGTCGTTCCTAGCGGGAGGTGTATTCGGTTGGACTTTTGGCCATGAGATTGCAAATCATTGGTATCAACTCTACAGGGTGGACACAATGGGTGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAATGAGGGACGTTTTTAAACTCTGATTTGCAGTTGAAGCAGCACTCATATCGCTGCTGCTTTCTAAAATAAAAATCAAGTGCAACTTTGTTGAAATACAATGGTTGATTGGTTTGTTTTGCACTGAACTCTTCCAATCCAAGTTTTATCTTCTGGAAATGACTGAATTCATTTGCAAGCTTGTGTTACAAATGTAGTCATCTTTGCCAAATACCTCCAATCCTGGGTGTTAAGGTCTAATCTAAAGCATCAGTTCTTGGCCCAAAATAAATTCACTTGTCTTGTTGAACCAATATATTTATATTAGCTTAGAATCAGAGGCCACAAAATTAAGCCTTACCTGAACAAGATCTATTCCATAGATAGTACGATTGTGTCCTTGAGTGCTAAGAATAACACTCCAGCCTTCTTTCCACTCTATAATTTTGATAGCACGTTCAAATAATTGTATTTGGGTTATTTAATTTAACAATGTTAATATATCTATATATTAAATTGAAAACATACTTATGTTAACAAATGTGGAATGTTTAGAGAATATCTTACTTTCATTTATAGAAGCCGGA

Coding sequence (CDS)

ATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAATTTTGGTCCGAGAGATTCTCCATCCTCGACAACTATTCCCCTTTTGTCCAGCGCGAGAAGCCCCTTCCTCCATGGTCTAGCTCCGATGTCGAGGAGTTCATTGCTTCCGACCCTGTTCATGGCCCCGCTTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTCTTACAGGTAGTGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAGAAGTTTGCATGGCGCTGGGCTGTCGTTCCTAGCGGGAGGTGTATTCGGTTGGACTTTTGGCCATGAGATTGCAAATCATTGGTATCAACTCTACAGGGTGGACACAATGGGTGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAATGAGGGACGTTTTTAA

Protein sequence

MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGRF
Homology
[Close]
BLAST of Tan0016373 vs. ExPASy Swiss-Prot
Match: Q941A6 (Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH6 PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.5e-55
Identity = 98/139 (70.50%), Postives = 114/139 (82.01%), Query Frame = 0 

Query: 6   SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKT 65
           S+SF  K+W G K+FWS+R S  +NY+ F +R+ PLP WSSSDVEEFIASDPVHGP LKT
Sbjct: 4   SESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKT 63

Query: 66  AREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHWYQLYR 125
           AREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL GGVFGWTFG E+ANH  QLY+
Sbjct: 64  AREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYK 123

Query: 126 VDTMGAQVKFMEWWRNKNE 145
           +DTM AQVKFMEWW  K++
Sbjct: 124 LDTMAAQVKFMEWWERKSQ 142

[Close]
BLAST of Tan0016373 vs. ExPASy Swiss-Prot
Match: Q6ZCC4 (Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH6 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 9.3e-32
Identity = 62/134 (46.27%), Postives = 86/134 (64.18%), Query Frame = 0 

Query: 12  KHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKTAREAVN 71
           +H EG K  W++ FS LD +     R+KPLP W+ +DV+EFIASDPV+GP LK  RE+  
Sbjct: 5   EHVEGIKAHWAKNFSFLDYFKKVYGRDKPLPKWTDADVDEFIASDPVYGPQLKAMRESRK 64

Query: 72  FGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHWYQLYRVDTMGA 131
           F L G+++G     G+A KYS++ HG  L+   G + G   G E+A HWYQLY+ D  GA
Sbjct: 65  FALGGALVGGAHLGGIALKYSKAPHGVVLATGFGAICGAVVGSEVAEHWYQLYKTDKQGA 124

Query: 132 QVKFMEWWRNKNEG 146
            ++F+ WW +K  G
Sbjct: 125 NLRFIYWWEDKVAG 138

[Close]
BLAST of Tan0016373 vs. NCBI nr
Match: XP_022927277.1 (succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata] >XP_023531100.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita pepo subsp. pepo] >KAG6588233.1 Succinate dehydrogenase subunit 6, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022147.1 Succinate dehydrogenase subunit 6, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301.2 bits (770), Expect = 4.8e-78
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLP WS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHW 120
           P LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGLSFLAGG FGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKNEGRF 148
           YQLYRVDTMGAQVKFMEWWRNK+EGRF
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 147

[Close]
BLAST of Tan0016373 vs. NCBI nr
Match: XP_022153276.1 (succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia])

HSP 1 Score: 298.9 bits (764), Expect = 2.4e-77
Identity = 139/147 (94.56%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLP WSSSDVE FIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHG 60

Query: 61  PALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHW 120
           P LKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHE+ANHW
Sbjct: 61  PTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEVANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKNEGRF 148
           YQLYR+DTM AQVKFMEWWRNKNEGRF
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKNEGRF 147

[Close]
BLAST of Tan0016373 vs. NCBI nr
Match: KAG6590149.1 (Succinate dehydrogenase subunit 6, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023816.1 Succinate dehydrogenase subunit 6, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.5 bits (763), Expect = 3.1e-77
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHG 60
           ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+KPLPPWSSSDVEEFIA +PVHG
Sbjct: 1   MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHG 60

Query: 61  PALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHW 120
           PALKTAREAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGLS LAGGVFGWTFGHEIANHW
Sbjct: 61  PALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKNEGRF 148
           YQLYRVDTMGAQVKFMEWWRNKNEG F
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKNEGHF 147

[Close]
BLAST of Tan0016373 vs. NCBI nr
Match: XP_022988231.1 (succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-76
Identity = 138/147 (93.88%), Postives = 141/147 (95.92%), Query Frame = 0 

Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+ PLPPWSSSDVEEFIA +PVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDNPLPPWSSSDVEEFIAFNPVHG 60

Query: 61  PALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHW 120
           P LKTAREAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGLS L GGVFGWTFGHEIANHW
Sbjct: 61  PTLKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLVGGVFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKNEGRF 148
           YQLYRVDTMGAQVKFMEWWRNKNEG F
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKNEGHF 147

[Close]
BLAST of Tan0016373 vs. NCBI nr
Match: XP_022965868.1 (succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 294.7 bits (753), Expect = 4.5e-76
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 0 

Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLP WS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHW 120
           P LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGLSFLAGG FGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKNE 145
           YQLYRVDTMGAQVKFMEWWRNK+E
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSE 144

[Close]
BLAST of Tan0016373 vs. ExPASy TrEMBL
Match: A0A6J1EGQ0 (succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111434163 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.3e-78
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLP WS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHW 120
           P LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGLSFLAGG FGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKNEGRF 148
           YQLYRVDTMGAQVKFMEWWRNK+EGRF
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 147

[Close]
BLAST of Tan0016373 vs. ExPASy TrEMBL
Match: A0A6J1DK58 (succinate dehydrogenase subunit 6, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111020802 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 139/147 (94.56%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLP WSSSDVE FIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHG 60

Query: 61  PALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHW 120
           P LKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHE+ANHW
Sbjct: 61  PTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEVANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKNEGRF 148
           YQLYR+DTM AQVKFMEWWRNKNEGRF
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKNEGRF 147

[Close]
BLAST of Tan0016373 vs. ExPASy TrEMBL
Match: A0A6J1JGN4 (succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111485533 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.5e-77
Identity = 138/147 (93.88%), Postives = 141/147 (95.92%), Query Frame = 0 

Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+ PLPPWSSSDVEEFIA +PVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDNPLPPWSSSDVEEFIAFNPVHG 60

Query: 61  PALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHW 120
           P LKTAREAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGLS L GGVFGWTFGHEIANHW
Sbjct: 61  PTLKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLVGGVFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKNEGRF 148
           YQLYRVDTMGAQVKFMEWWRNKNEG F
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKNEGHF 147

[Close]
BLAST of Tan0016373 vs. ExPASy TrEMBL
Match: A0A6J1HQ77 (succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111465621 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.2e-76
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 0 

Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLP WS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHW 120
           P LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGLSFLAGG FGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKNE 145
           YQLYRVDTMGAQVKFMEWWRNK+E
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSE 144

[Close]
BLAST of Tan0016373 vs. ExPASy TrEMBL
Match: A0A6J1H994 (succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111461715 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.9e-76
Identity = 138/147 (93.88%), Postives = 141/147 (95.92%), Query Frame = 0 

Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHG 60
           ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+KPLPPWSSSD EEFIA +PVHG
Sbjct: 1   MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHG 60

Query: 61  PALKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHW 120
           PALKTAREAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGLS LAGGVFGWTFGHEIANHW
Sbjct: 61  PALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKNEGRF 148
           YQLYRVDTMGAQVKFMEWW NKNEG F
Sbjct: 121 YQLYRVDTMGAQVKFMEWWGNKNEGHF 147

[Close]
BLAST of Tan0016373 vs. TAIR 10
Match: AT1G08480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 215.7 bits (548), Expect = 2.5e-56
Identity = 98/139 (70.50%), Postives = 114/139 (82.01%), Query Frame = 0 

Query: 6   SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPPWSSSDVEEFIASDPVHGPALKT 65
           S+SF  K+W G K+FWS+R S  +NY+ F +R+ PLP WSSSDVEEFIASDPVHGP LKT
Sbjct: 4   SESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKT 63

Query: 66  AREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHWYQLYR 125
           AREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL GGVFGWTFG E+ANH  QLY+
Sbjct: 64  AREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYK 123

Query: 126 VDTMGAQVKFMEWWRNKNE 145
           +DTM AQVKFMEWW  K++
Sbjct: 124 LDTMAAQVKFMEWWERKSQ 142

The following BLAST results are available for this feature:
BLAST of Tan0016373 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q941A63.5e-5570.50Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
Q6ZCC49.3e-3246.27Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica... [more]
BLAST of Tan0016373 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022927277.14.8e-7895.92succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata] >XP_0... [more]
XP_022153276.12.4e-7794.56succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia][more]
KAG6590149.13.1e-7795.24Succinate dehydrogenase subunit 6, mitochondrial, partial [Cucurbita argyrosperm... [more]
XP_022988231.11.6e-7693.88succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima][more]
XP_022965868.14.5e-7695.83succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima][more]
BLAST of Tan0016373 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EGQ02.3e-7895.92succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita moschata OX=3... [more]
A0A6J1DK581.2e-7794.56succinate dehydrogenase subunit 6, mitochondrial OS=Momordica charantia OX=3673 ... [more]
A0A6J1JGN47.5e-7793.88succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita maxima OX=366... [more]
A0A6J1HQ772.2e-7695.83succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita maxima OX=366... [more]
A0A6J1H9942.9e-7693.88succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita moschata OX=3... [more]
BLAST of Tan0016373 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G08480.12.5e-5670.50unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034574Succinate dehydrogenase subunit 6, mitochondrialPANTHERPTHR36708SUCCINATE DEHYDROGENASE SUBUNIT 6, MITOCHONDRIALcoord: 3..145
NoneNo IPR availablePANTHERPTHR36708:SF2SUCCINATE DEHYDROGENASE SUBUNIT 6, MITOCHONDRIAL-LIKEcoord: 3..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016373.1Tan0016373.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
molecular_function GO:0043495 protein-membrane adaptor activity