Tan0016346 (gene) Snake gourd v1

Overview


Name	Tan0016346
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase domain-containing protein
Location	LG01: 31338838 .. 31341932 (-)
RNA-Seq Expression	Tan0016346
Synteny	Tan0016346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTGAGAAACTTTGCTTGGAGGCTTTGTGTCCTCCACTATGAATTGTCTTATTTGCAAGAAAGCATGACCTTATATGAAGATCTTAGTTGGAGGATTTGCCATCCACTTTGGATGTCCCTAAGCATTTGGAAGTATTAGTATAGCGTAGAGTGGCCTCCATGTTTCCCTATGCTATGTGCAAAAGGAGGGGGTGAGAGGAGGCAAATAAAGTAAAATTGGATTGGGGTTGGCATGAGAGACTCTTCCTTGCCCTATTAAACTTGGCCTTGAATGAGTGTTTGTCGTGGTCAATCGATCGAGTCGTATATGCTTTGGACAAATTCTTCATATATGGCTGAGGTAGAACGTTGTGACCTTTTAAGTGTTCGAAAGTTGAAGGCCAATTTAGACATGAGTTGATTATTGTGGATGATCTACACCAAGATATGATCTTCTCTTTATGTTGGACTTAAGGATGTTAGTAAATAATCAAAATAATCAAGCACTTTTATTCATTTATTTATAAATTATGAAGTTTTAGAGCATAAATTCTAATAAAAATTGCTAATACTTGTCTAAATACATGACTAAAATTTGATGAGATTGAGCATAAAGTAAAATAGATCAATCCCACCGAGTGTGAGATAAAAAAAAATGATTTATTTATTTTAAAATGTATTAAAGTATGAAGACTATAATAGCTTAATATGAAAATTTATGGACCGAGATAAAATATAGGTTAAAATACCATTTTGATCGATATACTTTGAGTTTCATTCCAATTTAGTCCATGTAATTTTATAAAATTTAAAATTGGTCAATACAGTTAGTTTGAAGTTAATTTTTATCAAAATTGGTTAAATAATAATAATAGTTTTCATATAATAAAAGACACAATGTAAACATGTTTTTCAGGATTTATAAAATAAAAGCTAATAGAAACTAATTTTTTTTTTTTTTTGTAAACTAATGATATGGACCAAATTTAAGCTTCATTGAAATTACAAAGATTAAAATTGGATATTTTAAAGTAGAAAGATTAAAATTAAATTAAATTTAAAGTACAAGTACCAAAATGATATTGCATTTTCATCCTTTTTTGGCTACTTTTTGTTGAAGGAAAATCAAAAGGACATTCTTAAATCTAGTTTAAATGTTAAACTTGTATTTTAAACATAATAGACTTTTTGTGTTTACTATTTTATTATTGCAATAGATTTTATATTTGATTTACATTTACATTTTCGTTCACCATACTCATTTATTCAAAATTGAAAAAAAAAAAAAATTTATATGCATCCCGGGCTAAACCCATTTTTCTGCAGCTCACTCAGTTGTCCATCTACTATTTTATTAATGCTCTTTTCAGGAATATTAAAGAGCGGGTCTGGAAGGTGTTGCAAACATGGAAAGAAAAATGTTTCTCTATAGGTGGAAAGGAAATTCTAATTAAGGCGGTGACCTAAGCCATCTCTATCTATCCTATGAGTTGTTTCAGGCTACCAAAGACATTGTGTATAGACCTGAATGCGATTTGCGCAAAGTTCTGGTGGGGTTCCATCGAAAAAGGAAGGAAGATACACTGGAAGAATTGGGGTCGTCTTTGCTATCCAAAAGAAAGGGGTGGACTGGGCTTCTGAGATATATCTATCTTCAATCAGAATCTGGATACTCTGGTTTACAGAGTTTATCGTAGACGATATTTCAAGTCAGGTAACTTCCTTCAGGTAACATTAGGAACAAATCCATCTTATACCTGGCGCAGTATTTTGTGGGGGCGCGATCTCTTTAAGCACGACTATCGTTGGAAGGTCGGCAATGGACACCAGATCAACATCAAAGAGGATCCTTGGTTGTTGGCGGAAGGACGGGACAAAACCCTTTGGGTGGATCCAATCCTGACTGGCTTAAATGTGTGCAATTTGATTCGAGCCGACGGCTTCTGGGACGAGGATAAGATACGAGAGCATTTCAACCAGGATGATGCAGACCACATTCTCTCCATCCCGCGAACTGGGGATATGTTTAGTGATGAGATCGTTTGGAAGTGTACTAAGAAAGGGGTCTTCTCGGTCCGAAGCGCCTACCATCTGGGTATGAGTTTTAGAGCACGTAAAGAAGCATCGAGTTCGAGCAACTCATTAACAAGGAAAATGTGGAAGTCAATATGGAGTACAACCATTCCAAACAAAATCAAGATTTGTTGTTGGAAAGTCATTCACGACATCCTCCCGACTCGAGGCAATTTGTTACAGAAAGGCATTATCCTGAACCCAGTCTGTCCATTCTGCCTAAAAAAGACGGAAACAAGGAATCACCTATTTTGGGGCTGCAAGGTATCTGCAAAATTCTGGGATCTTTTTTTTCCTGTTACCTCTGGTATTTTTTATGACTGTAGGGAAGTTTGCAGCGCAGAGGACTACTTCTGTTGGATGCAGGATAAGCATAGTCGTATGGAACAAGCGAAGTTCATGATAATCATCTGTTAAATATGGTCATGTCGGAATATTTTGTTACAGAAACAGGGCAGTCTGAACTGGGAAAGGGTGTTACTTAGTACACAACTCCAAATTCAGGAGTTCACTCAGCATGAGGCAGCTATGATCCAAACCCCAAATCATTTGGTTACAACGACGGAAGCTTGGGAGCCGCCGAATAAGGGTTGGTGGAAATTAAATACCGACGCATCCTGGTGCTCGATCAACAATCACGGGGGAGTAGGCTGGATCTTACGAGAATGGACAGGGAGGATAATGCGTGCAGGACATCGCCATACCACAGACAGGTGGTCAATCACCATCTTGGAACTTTATGGTATCCTCACGGGTTTGAGTTTCATCCAGGAATACAACACACCCCTTTTGGTGGAATCTGACTCTTGGGAGGCTATACGACTTATCAATGGTGATGACAATGACAAAACAAAGGCAGGAGATTTCGCGAAAAAGATCAGGCAACGAGCAATTTCGTGGACTAACATTTCTTTTCGTCACAATAGGCGAGAGACAAACATGGCCACTTACAAACTGGCGCAACGAGGGAAACACCTACTGAGAGAAGAAAATTGGCAAGAGGGGCCCACCGTAGCCCTTTTGGAATTTCTGTCTTAA

mRNA sequence

ATGAGTGTGAGAAACTTTGCTTGGAGGCTTTGTGTCCTCCACTATGAATTGTCTTATTTGCAAGAAAGCATGACCTTATATGAAGATCTTAGTTGGAGGATTTGCCATCCACTTTGGATGTCCCTAAGCATTTGGAAAGTTTATCGTAGACGATATTTCAAGTCAGGTAACTTCCTTCAGGTAACATTAGGAACAAATCCATCTTATACCTGGCGCAGTATTTTGTGGGGGCGCGATCTCTTTAAGCACGACTATCGTTGGAAGGTCGGCAATGGACACCAGATCAACATCAAAGAGGATCCTTGGTTGTTGGCGGAAGGACGGGACAAAACCCTTTGGGTGGATCCAATCCTGACTGGCTTAAATGTGTGCAATTTGATTCGAGCCGACGGCTTCTGGGACGAGGATAAGATACGAGAGCATTTCAACCAGGATGATGCAGACCACATTCTCTCCATCCCGCGAACTGGGGATATGTTTAGTGATGAGATCGTTTGGAAGTGTACTAAGAAAGGGGTCTTCTCGGTCCGAAGCGCCTACCATCTGGGGAAGTTTGCAGCGCAGAGGACTACTTCTGTTGGATGCAGGATAAGCATAGTCAAACAGGGCAGTCTGAACTGGGAAAGGGTGTTACTTAGTACACAACTCCAAATTCAGGAGTTCACTCAGCATGAGGCAGCTATGATCCAAACCCCAAATCATTTGGTTACAACGACGGAAGCTTGGGAGCCGCCGAATAAGGGTTGGTGGAAATTAAATACCGACGCATCCTGGTGCTCGATCAACAATCACGGGGGAGTAGGCTGGATCTTACGAGAATGGACAGGGAGGATAATGCGTGCAGGACATCGCCATACCACAGACAGGTGGTCAATCACCATCTTGGAACTTTATGGTATCCTCACGGGTTTGAGTTTCATCCAGGAATACAACACACCCCTTTTGGTGGAATCTGACTCTTGGGAGGCTATACGACTTATCAATGGTGATGACAATGACAAAACAAAGGCAGGAGATTTCGCGAAAAAGATCAGGCAACGAGCAATTTCGTGGACTAACATTTCTTTTCGTCACAATAGGCGAGAGACAAACATGGCCACTTACAAACTGGCGCAACGAGGGAAACACCTACTGAGAGAAGAAAATTGGCAAGAGGGGCCCACCGTAGCCCTTTTGGAATTTCTGTCTTAA

Coding sequence (CDS)

ATGAGTGTGAGAAACTTTGCTTGGAGGCTTTGTGTCCTCCACTATGAATTGTCTTATTTGCAAGAAAGCATGACCTTATATGAAGATCTTAGTTGGAGGATTTGCCATCCACTTTGGATGTCCCTAAGCATTTGGAAAGTTTATCGTAGACGATATTTCAAGTCAGGTAACTTCCTTCAGGTAACATTAGGAACAAATCCATCTTATACCTGGCGCAGTATTTTGTGGGGGCGCGATCTCTTTAAGCACGACTATCGTTGGAAGGTCGGCAATGGACACCAGATCAACATCAAAGAGGATCCTTGGTTGTTGGCGGAAGGACGGGACAAAACCCTTTGGGTGGATCCAATCCTGACTGGCTTAAATGTGTGCAATTTGATTCGAGCCGACGGCTTCTGGGACGAGGATAAGATACGAGAGCATTTCAACCAGGATGATGCAGACCACATTCTCTCCATCCCGCGAACTGGGGATATGTTTAGTGATGAGATCGTTTGGAAGTGTACTAAGAAAGGGGTCTTCTCGGTCCGAAGCGCCTACCATCTGGGGAAGTTTGCAGCGCAGAGGACTACTTCTGTTGGATGCAGGATAAGCATAGTCAAACAGGGCAGTCTGAACTGGGAAAGGGTGTTACTTAGTACACAACTCCAAATTCAGGAGTTCACTCAGCATGAGGCAGCTATGATCCAAACCCCAAATCATTTGGTTACAACGACGGAAGCTTGGGAGCCGCCGAATAAGGGTTGGTGGAAATTAAATACCGACGCATCCTGGTGCTCGATCAACAATCACGGGGGAGTAGGCTGGATCTTACGAGAATGGACAGGGAGGATAATGCGTGCAGGACATCGCCATACCACAGACAGGTGGTCAATCACCATCTTGGAACTTTATGGTATCCTCACGGGTTTGAGTTTCATCCAGGAATACAACACACCCCTTTTGGTGGAATCTGACTCTTGGGAGGCTATACGACTTATCAATGGTGATGACAATGACAAAACAAAGGCAGGAGATTTCGCGAAAAAGATCAGGCAACGAGCAATTTCGTGGACTAACATTTCTTTTCGTCACAATAGGCGAGAGACAAACATGGCCACTTACAAACTGGCGCAACGAGGGAAACACCTACTGAGAGAAGAAAATTGGCAAGAGGGGCCCACCGTAGCCCTTTTGGAATTTCTGTCTTAA

Protein sequence

MSVRNFAWRLCVLHYELSYLQESMTLYEDLSWRICHPLWMSLSIWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWKVGNGHQINIKEDPWLLAEGRDKTLWVDPILTGLNVCNLIRADGFWDEDKIREHFNQDDADHILSIPRTGDMFSDEIVWKCTKKGVFSVRSAYHLGKFAAQRTTSVGCRISIVKQGSLNWERVLLSTQLQIQEFTQHEAAMIQTPNHLVTTTEAWEPPNKGWWKLNTDASWCSINNHGGVGWILREWTGRIMRAGHRHTTDRWSITILELYGILTGLSFIQEYNTPLLVESDSWEAIRLINGDDNDKTKAGDFAKKIRQRAISWTNISFRHNRRETNMATYKLAQRGKHLLREENWQEGPTVALLEFLS

Homology

[Close]

BLAST of Tan0016346 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.6e-07
Identity = 27/76 (35.53%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 31  SWRICHPLWMSLSIWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWKVG 90
           S+RI H     LS  ++ R RYF   + ++ ++GT PSY WRSI+ GR+L        +G
Sbjct: 74  SFRIIHQPHTLLS--RLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIG 133

Query: 91  NGHQINIKEDPWLLAE 107
           +G    +  D W++ E
Sbjct: 134 DGIHTKVWLDRWIMDE 147

[Close]

BLAST of Tan0016346 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 159.8 bits (403), Expect = 4.7e-35
Identity = 78/154 (50.65%), Postives = 93/154 (60.39%), Query Frame = 0


Query: 31  SWRIC-HPLWMSLSIWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWKV 90
           SWRI  HP      + K  R +YFK+G+FLQ  LG  PSY WRSILWGRDLFK  YRWKV
Sbjct: 535 SWRILRHP---DSLLAKTLRGKYFKTGSFLQAKLGARPSYAWRSILWGRDLFKKGYRWKV 594

Query: 91  GNGHQINIKEDPWLLAEGRDKTLWVDPILTGLNVCNLIRADGFWDEDKIREHFNQDDADH 150
           GNG  IN+  DPWL  +G    ++    +   +V  L+   G WDE K+RE F   +AD 
Sbjct: 595 GNGFSINLSSDPWLPRDGNFSPVFTHIHVRNFSVAWLMEGRGRWDEIKVRESFIVSEADI 654

Query: 151 ILSIPRTGDMFSDEIVWKCTKKGVFSVRSAYHLG 184
           IL  P       DEI+W   K G+FSVRSAYHLG
Sbjct: 655 ILQTPLPSQDKDDEIIWGMDKTGIFSVRSAYHLG 685

[Close]

BLAST of Tan0016346 vs. NCBI nr
Match: CAB4263564.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 149.4 bits (376), Expect = 6.3e-32
Identity = 107/403 (26.55%), Postives = 176/403 (43.67%), Query Frame = 0


Query: 34   ICHPLWMSLS-----IWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWK 93
            +C   W  L      I ++++ RYF   +FL  + G+ PS+TW+S+LWGRDL +   RW+
Sbjct: 827  LCKQGWRLLEFPNSLIARMFKARYFPHSDFLAASSGSLPSFTWQSLLWGRDLLRLGLRWR 886

Query: 94   VGNGHQINIKEDPWLLAEGRDKTLWVDPILTGLNVCNLIRADGFWDEDKIREHFNQDDAD 153
            +G+G  +NI  DPW+  +       +  +     VC+L  A G WD  K+   F+  +A+
Sbjct: 887  IGDGRLVNIYGDPWVPYDRFFTIQSIPTLPVTSRVCDLFTASGGWDVRKVFASFSFPEAE 946

Query: 154  HILSIPRTGDMFSDEIVWKCTKKGVFSVRSAYHLG---KFAAQRTTS--VGCRISIVKQG 213
             ILSIP  GD   D  +W  TK G +SV+S Y      K   + +T    G   S +K  
Sbjct: 947  AILSIPLMGDTL-DRRIWNFTKNGRYSVKSGYWAALEYKRLEELSTGGVAGPSSSSLKSW 1006

Query: 214  SLNW----------------ERVLLSTQLQI-QEFTQHEA-AMIQTPNHLVTTTEA---- 273
               W                + +L S ++   +  TQ E    +  P++ +  T A    
Sbjct: 1007 KHLWKLKVPQKILHLLWRVAQDILPSKEVLFRRRITQGEVWEALDFPSNFLLPTLADVGT 1066

Query: 274  -------------------------------WEPPNKGWWKLNTDASWCSINNHGGVGWI 333
                                           W PP    +KLN D +        G G I
Sbjct: 1067 WMDAIWSIIPPDKQSLFAFTVSLSSPVCDIKWRPPTGNCFKLNVDGATDMETGARGAGAI 1126

Query: 334  LREWTGRIMRAGHRHTTDRWSITILELYGILTGLSFIQEYN-TPLLVESDSWEAIRLING 373
            +R+  G+++ A       R S+   ELY +  G+SF  + +  PL +ESDS +A+ ++N 
Sbjct: 1127 VRDSHGKLVGALAMRAPSRISVLATELYALKVGISFALDMSPVPLEIESDSLQAVSMVNS 1186

[Close]

BLAST of Tan0016346 vs. NCBI nr
Match: XP_015388020.1 (uncharacterized protein LOC107177951 [Citrus sinensis])

HSP 1 Score: 149.1 bits (375), Expect = 8.3e-32
Identity = 102/378 (26.98%), Postives = 171/378 (45.24%), Query Frame = 0


Query: 31  SWRICHPLWMSLSIWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWKVG 90
           SWRI       L+  +V + +YF+   F++  +G+NPSY WRSILWGR++     RW++ 
Sbjct: 646 SWRIIQAPESLLA--RVMKEKYFRHSGFMEAQVGSNPSYIWRSILWGREVIHKGLRWRIR 705

Query: 91  NGHQINIKEDPWLLAEGRDKTLWVDPILTGLNVCNLIRADGFWDEDKIREHFNQDDADHI 150
           +G  + + +  WL      K +    +     V  LI  D  W +D IR+HF+Q+DA  I
Sbjct: 706 DGKLVKVYQSGWLPRPETFKPISPPSLPLDTTVSVLIDEDHCWRDDAIRKHFHQEDAAQI 765

Query: 151 LSIPRTGDMFSDEIVWKCTKKGVFSVRSAYHLG---KFAAQRTTSVGCRISIVKQGSLNW 210
           L IP       D+++W   KKG +SV+S Y L    KF  + ++S        K+G  +W
Sbjct: 766 LKIPLPRQPSLDQVLWHYDKKGNYSVKSGYQLALQMKFPNRPSSS--------KEGKSSW 825

Query: 211 ERVLLSTQLQIQEFTQHEAAM---------------IQTP------NHLVTTTEAWEPPN 270
             +     LQI E  + E +                IQ P      +  + + E W  P 
Sbjct: 826 SSI---WYLQIPEKNKKEDSQLSVAGAEAIVQSYKRIQMPQLQAISDQNLASQEHWNCPP 885

Query: 271 KGWWKLNTDASWCSINNHGGVGWILREWTGRIMRAGHRHT------------TDRWSITI 330
            GW+K+N DA+    N   G+G ++R   G+++ A  + +              R+ + +
Sbjct: 886 AGWFKVNVDAAVKIDNQRVGLGIVIRNSEGKLITAAIKPSKWLDRMDYAEAEATRFGLEV 945

Query: 331 LELYGILTGLSFIQEYNTPLLVESDSWEAIRLINGDDNDKTKAGDFAKKIRQRAISWTNI 373
            E+ G L           PL+VE+DS E   L++   + K +      ++++      ++
Sbjct: 946 AEIAGCL-----------PLIVETDSKEVSNLVSARKSTKAEIFWIVSEVQETMERLKHV 999

[Close]

BLAST of Tan0016346 vs. NCBI nr
Match: CAB4277970.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 137.1 bits (344), Expect = 3.3e-28
Identity = 117/470 (24.89%), Postives = 188/470 (40.00%), Query Frame = 0


Query: 34  ICHPLWMSLS-----IWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWK 93
           +C   W  L      I ++++ RYF   +FL  + G+ PS+TW+SILWGRDL +   RW+
Sbjct: 102 LCKQGWRLLEFPHSLIARMFKARYFPHSDFLATSSGSLPSFTWQSILWGRDLLRLGLRWR 161

Query: 94  VGNGHQINIKEDPWLLAEGRDKTLWVDPILTGLNVCNLIRADGFWDEDKIREHFNQDDAD 153
           +G+G  +NI  DPW+  +       +  +     VC+L  A G WD  K+   F+  +A+
Sbjct: 162 IGDGRLVNIYGDPWVPYDRFFTIQSIPTLPVTSRVCDLFTASGGWDVGKVFASFSFPEAE 221

Query: 154 HILSIPRTGDMFSDEIVWKCTKKGVFSVRSAY---------------------------- 213
            ILSIP  GD   D  +W  TK G +SV+S Y                            
Sbjct: 222 AILSIPLMGDTL-DRRIWNFTKNGRYSVKSGYWAALEYKRLEELSAGGVAGPSSSSLKSW 281

Query: 214 -HLGK---------------------------------------FAAQRTT---SVGCRI 273
            HL K                                       FAA+ TT    VGC +
Sbjct: 282 KHLWKLKVPQKIMHLLWRVAQDILPSKEVLFRRRITQGEVCCRCFAARETTLHALVGCDV 341

Query: 274 SIVKQGSLNW----------------------------------------ER--VLLSTQ 333
            +    +L++                                        ER  VL  +Q
Sbjct: 342 CLQVWKALDFPSDFLLPTLADVGTWMDAVWSIIPPDKQSLFAFTVWVLWNERNGVLFGSQ 401

Query: 334 -----LQIQ-------EFTQHEAAMIQTPNHLVTTTEAWEPPNKGWWKLNTDASWCSINN 373
                + +Q       EF ++ AA  ++ +  V   + W PP    +KLN D +      
Sbjct: 402 PTPSGILVQRAKDYDAEFKRYSAANHRSLSSPVRDIK-WRPPTGNCFKLNVDGATDMETG 461

[Close]

BLAST of Tan0016346 vs. NCBI nr
Match: CAB4277969.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 137.1 bits (344), Expect = 3.3e-28
Identity = 117/470 (24.89%), Postives = 188/470 (40.00%), Query Frame = 0


Query: 34   ICHPLWMSLS-----IWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWK 93
            +C   W  L      I ++++ RYF   +FL  + G+ PS+TW+SILWGRDL +   RW+
Sbjct: 1252 LCKQGWRLLEFPHSLIARMFKARYFPHSDFLATSSGSLPSFTWQSILWGRDLLRLGLRWR 1311

Query: 94   VGNGHQINIKEDPWLLAEGRDKTLWVDPILTGLNVCNLIRADGFWDEDKIREHFNQDDAD 153
            +G+G  +NI  DPW+  +       +  +     VC+L  A G WD  K+   F+  +A+
Sbjct: 1312 IGDGRLVNIYGDPWVPYDRFFTIQSIPTLPVTSRVCDLFTASGGWDVGKVFASFSFPEAE 1371

Query: 154  HILSIPRTGDMFSDEIVWKCTKKGVFSVRSAY---------------------------- 213
             ILSIP  GD   D  +W  TK G +SV+S Y                            
Sbjct: 1372 AILSIPLMGDTL-DRRIWNFTKNGRYSVKSGYWAALEYKRLEELSAGGVAGPSSSSLKSW 1431

Query: 214  -HLGK---------------------------------------FAAQRTT---SVGCRI 273
             HL K                                       FAA+ TT    VGC +
Sbjct: 1432 KHLWKLKVPQKIMHLLWRVAQDILPSKEVLFRRRITQGEVCCRCFAARETTLHALVGCDV 1491

Query: 274  SIVKQGSLNW----------------------------------------ER--VLLSTQ 333
             +    +L++                                        ER  VL  +Q
Sbjct: 1492 CLQVWKALDFPSDFLLPTLADVGTWMDAVWSIIPPDKQSLFAFTVWVLWNERNGVLFGSQ 1551

Query: 334  -----LQIQ-------EFTQHEAAMIQTPNHLVTTTEAWEPPNKGWWKLNTDASWCSINN 373
                 + +Q       EF ++ AA  ++ +  V   + W PP    +KLN D +      
Sbjct: 1552 PTPSGILVQRAKDYDAEFKRYSAANHRSLSSPVRDIK-WRPPTGNCFKLNVDGATDMETG 1611

[Close]

BLAST of Tan0016346 vs. ExPASy TrEMBL
Match: A0A6J1DRA0 (uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022423 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-35
Identity = 78/154 (50.65%), Postives = 93/154 (60.39%), Query Frame = 0


Query: 31  SWRIC-HPLWMSLSIWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWKV 90
           SWRI  HP      + K  R +YFK+G+FLQ  LG  PSY WRSILWGRDLFK  YRWKV
Sbjct: 535 SWRILRHP---DSLLAKTLRGKYFKTGSFLQAKLGARPSYAWRSILWGRDLFKKGYRWKV 594

Query: 91  GNGHQINIKEDPWLLAEGRDKTLWVDPILTGLNVCNLIRADGFWDEDKIREHFNQDDADH 150
           GNG  IN+  DPWL  +G    ++    +   +V  L+   G WDE K+RE F   +AD 
Sbjct: 595 GNGFSINLSSDPWLPRDGNFSPVFTHIHVRNFSVAWLMEGRGRWDEIKVRESFIVSEADI 654

Query: 151 ILSIPRTGDMFSDEIVWKCTKKGVFSVRSAYHLG 184
           IL  P       DEI+W   K G+FSVRSAYHLG
Sbjct: 655 ILQTPLPSQDKDDEIIWGMDKTGIFSVRSAYHLG 685

[Close]

BLAST of Tan0016346 vs. ExPASy TrEMBL
Match: A0A6J5TIF9 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS4077 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-32
Identity = 107/403 (26.55%), Postives = 176/403 (43.67%), Query Frame = 0


Query: 34   ICHPLWMSLS-----IWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWK 93
            +C   W  L      I ++++ RYF   +FL  + G+ PS+TW+S+LWGRDL +   RW+
Sbjct: 827  LCKQGWRLLEFPNSLIARMFKARYFPHSDFLAASSGSLPSFTWQSLLWGRDLLRLGLRWR 886

Query: 94   VGNGHQINIKEDPWLLAEGRDKTLWVDPILTGLNVCNLIRADGFWDEDKIREHFNQDDAD 153
            +G+G  +NI  DPW+  +       +  +     VC+L  A G WD  K+   F+  +A+
Sbjct: 887  IGDGRLVNIYGDPWVPYDRFFTIQSIPTLPVTSRVCDLFTASGGWDVRKVFASFSFPEAE 946

Query: 154  HILSIPRTGDMFSDEIVWKCTKKGVFSVRSAYHLG---KFAAQRTTS--VGCRISIVKQG 213
             ILSIP  GD   D  +W  TK G +SV+S Y      K   + +T    G   S +K  
Sbjct: 947  AILSIPLMGDTL-DRRIWNFTKNGRYSVKSGYWAALEYKRLEELSTGGVAGPSSSSLKSW 1006

Query: 214  SLNW----------------ERVLLSTQLQI-QEFTQHEA-AMIQTPNHLVTTTEA---- 273
               W                + +L S ++   +  TQ E    +  P++ +  T A    
Sbjct: 1007 KHLWKLKVPQKILHLLWRVAQDILPSKEVLFRRRITQGEVWEALDFPSNFLLPTLADVGT 1066

Query: 274  -------------------------------WEPPNKGWWKLNTDASWCSINNHGGVGWI 333
                                           W PP    +KLN D +        G G I
Sbjct: 1067 WMDAIWSIIPPDKQSLFAFTVSLSSPVCDIKWRPPTGNCFKLNVDGATDMETGARGAGAI 1126

Query: 334  LREWTGRIMRAGHRHTTDRWSITILELYGILTGLSFIQEYN-TPLLVESDSWEAIRLING 373
            +R+  G+++ A       R S+   ELY +  G+SF  + +  PL +ESDS +A+ ++N 
Sbjct: 1127 VRDSHGKLVGALAMRAPSRISVLATELYALKVGISFALDMSPVPLEIESDSLQAVSMVNS 1186

[Close]

BLAST of Tan0016346 vs. ExPASy TrEMBL
Match: A0A2N9IYC8 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57142 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.9e-31
Identity = 101/357 (28.29%), Postives = 162/357 (45.38%), Query Frame = 0


Query: 32   WRICHPLWMSLSIWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWKVGN 91
            WR+ H    S   +KV++ +YF   + L+V   T  SY WRSIL  RDL      W+VG 
Sbjct: 1304 WRLLHN--PSSLFFKVFKAKYFPRCSILEVQQSTKGSYAWRSILSARDLITKGLVWRVGT 1363

Query: 92   GHQINIKEDPWLLAEGRDKTLWVDPILTGL-NVCNLIRAD-GFWDEDKIREHFNQDDADH 151
            G  I I  D WL+     + +   P+ T + +V +LI +D   W  + ++E F   +A  
Sbjct: 1364 GKDIRIWGDKWLIGSNNHRIISTPPLNTSISHVEHLIDSDLKSWKTELVKELFLPQEATT 1423

Query: 152  ILSIPRTGDMFSDEIVWKCTKKGVFSVRSAYHLGKFAAQRTTSVGCRISIVKQGSLNWER 211
            IL IP +    +D +VW  TK+GV++VRS YHL      R           K   L W+ 
Sbjct: 1424 ILGIPLSFRNPADSLVWGATKQGVYTVRSGYHL--LFNDRNQDESGPSDTTKMSQL-WKA 1483

Query: 212  VLLSTQLQIQEFTQHEAAMIQTPNHLVTTTEAWEPPNKGWWKLNTDASWCSINNHGGVGW 271
            +  + +  ++     +    ++     TT   W+PP    +K+N D +  +  N  G+G 
Sbjct: 1484 IWRARETLLEFHEAQDRGKQRSLQSNSTTVIKWKPPEDRRYKVNYDGAVFNDRNEAGIGV 1543

Query: 272  ILREWTGRIMRAGHRHTTDRWSITILELYGILTGLSFIQEYN-TPLLVESDSWEAIRLIN 331
            I+R   G +M A  +      S+  +E     + + F ++     + +E DS   +  I 
Sbjct: 1544 IIRNHQGEVMGALSQRIPYPHSVEAVEASAARSAIQFAKDLGFMNIDLEGDSTSIVEAIL 1603

Query: 332  GDDNDKTKAGDFAKKIRQRAISWTNISFRHNRRETNMATYKLAQRGKHLLREENWQE 386
                  T  G+  + IRQ A    ++ F H +RE N+  + LA+R       E W E
Sbjct: 1604 LTTPCSTIYGNIIEDIRQIARGLQSVQFLHIKREGNVMAHLLAKRAGINKPFETWME 1655

[Close]

BLAST of Tan0016346 vs. ExPASy TrEMBL
Match: A0A6J5UN51 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS28124 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-28
Identity = 117/470 (24.89%), Postives = 188/470 (40.00%), Query Frame = 0


Query: 34   ICHPLWMSLS-----IWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWK 93
            +C   W  L      I ++++ RYF   +FL  + G+ PS+TW+SILWGRDL +   RW+
Sbjct: 1252 LCKQGWRLLEFPHSLIARMFKARYFPHSDFLATSSGSLPSFTWQSILWGRDLLRLGLRWR 1311

Query: 94   VGNGHQINIKEDPWLLAEGRDKTLWVDPILTGLNVCNLIRADGFWDEDKIREHFNQDDAD 153
            +G+G  +NI  DPW+  +       +  +     VC+L  A G WD  K+   F+  +A+
Sbjct: 1312 IGDGRLVNIYGDPWVPYDRFFTIQSIPTLPVTSRVCDLFTASGGWDVGKVFASFSFPEAE 1371

Query: 154  HILSIPRTGDMFSDEIVWKCTKKGVFSVRSAY---------------------------- 213
             ILSIP  GD   D  +W  TK G +SV+S Y                            
Sbjct: 1372 AILSIPLMGDTL-DRRIWNFTKNGRYSVKSGYWAALEYKRLEELSAGGVAGPSSSSLKSW 1431

Query: 214  -HLGK---------------------------------------FAAQRTT---SVGCRI 273
             HL K                                       FAA+ TT    VGC +
Sbjct: 1432 KHLWKLKVPQKIMHLLWRVAQDILPSKEVLFRRRITQGEVCCRCFAARETTLHALVGCDV 1491

Query: 274  SIVKQGSLNW----------------------------------------ER--VLLSTQ 333
             +    +L++                                        ER  VL  +Q
Sbjct: 1492 CLQVWKALDFPSDFLLPTLADVGTWMDAVWSIIPPDKQSLFAFTVWVLWNERNGVLFGSQ 1551

Query: 334  -----LQIQ-------EFTQHEAAMIQTPNHLVTTTEAWEPPNKGWWKLNTDASWCSINN 373
                 + +Q       EF ++ AA  ++ +  V   + W PP    +KLN D +      
Sbjct: 1552 PTPSGILVQRAKDYDAEFKRYSAANHRSLSSPVRDIK-WRPPTGNCFKLNVDGATDMETG 1611

[Close]

BLAST of Tan0016346 vs. ExPASy TrEMBL
Match: A0A6J5UN24 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS28123 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-28
Identity = 117/470 (24.89%), Postives = 188/470 (40.00%), Query Frame = 0


Query: 34  ICHPLWMSLS-----IWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWK 93
           +C   W  L      I ++++ RYF   +FL  + G+ PS+TW+SILWGRDL +   RW+
Sbjct: 102 LCKQGWRLLEFPHSLIARMFKARYFPHSDFLATSSGSLPSFTWQSILWGRDLLRLGLRWR 161

Query: 94  VGNGHQINIKEDPWLLAEGRDKTLWVDPILTGLNVCNLIRADGFWDEDKIREHFNQDDAD 153
           +G+G  +NI  DPW+  +       +  +     VC+L  A G WD  K+   F+  +A+
Sbjct: 162 IGDGRLVNIYGDPWVPYDRFFTIQSIPTLPVTSRVCDLFTASGGWDVGKVFASFSFPEAE 221

Query: 154 HILSIPRTGDMFSDEIVWKCTKKGVFSVRSAY---------------------------- 213
            ILSIP  GD   D  +W  TK G +SV+S Y                            
Sbjct: 222 AILSIPLMGDTL-DRRIWNFTKNGRYSVKSGYWAALEYKRLEELSAGGVAGPSSSSLKSW 281

Query: 214 -HLGK---------------------------------------FAAQRTT---SVGCRI 273
            HL K                                       FAA+ TT    VGC +
Sbjct: 282 KHLWKLKVPQKIMHLLWRVAQDILPSKEVLFRRRITQGEVCCRCFAARETTLHALVGCDV 341

Query: 274 SIVKQGSLNW----------------------------------------ER--VLLSTQ 333
            +    +L++                                        ER  VL  +Q
Sbjct: 342 CLQVWKALDFPSDFLLPTLADVGTWMDAVWSIIPPDKQSLFAFTVWVLWNERNGVLFGSQ 401

Query: 334 -----LQIQ-------EFTQHEAAMIQTPNHLVTTTEAWEPPNKGWWKLNTDASWCSINN 373
                + +Q       EF ++ AA  ++ +  V   + W PP    +KLN D +      
Sbjct: 402 PTPSGILVQRAKDYDAEFKRYSAANHRSLSSPVRDIK-WRPPTGNCFKLNVDGATDMETG 461

[Close]

BLAST of Tan0016346 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-10
Identity = 44/157 (28.03%), Postives = 69/157 (43.95%), Query Frame = 0


Query: 38  LWMSLS-----IWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWKVGNG 97
           +W  LS     + KV++ RYF   + L   LG+ PS+ W+SI   +++ +   R  VGNG
Sbjct: 73  MWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNG 132

Query: 98  HQINIKEDPWLLAEGRDKTLWVD--------PILTGLNVCNLIRADG-FWDEDKIREHFN 157
             I I    WL ++     L +          + + L V +LI   G  W +D I   F 
Sbjct: 133 EDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFP 192

Query: 158 QDDADHILSIPRTGDMFSDEIVWKCTKKGVFSVRSAY 181
           + +   I  +   G    D   W  T  G ++V+S Y
Sbjct: 193 EVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGY 229

HSP 2 Score: 55.8 bits (133), Expect = 8.9e-08
Identity = 42/144 (29.17%), Postives = 63/144 (43.75%), Query Frame = 0


Query: 242 WEPPNKGWWKLNTDASWCSINNHGGVGWILREWTGRIMRAGHRHTTDRWSITILEL---- 301
           W PP   W K NTDA+W   N   G+GW+LR   G +   G R      S+   EL    
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479

Query: 302 YGILTGLSFIQEYNTPLLVESDSWEAIRLINGDD---NDKTKAGDFAKKIRQRAISWTNI 361
           + +L+   F   Y   ++ ESDS   I ++N D+   + K    D  + + Q    +T +
Sbjct: 480 WAVLSLSRFQYNY---VIFESDSQVLIEILNNDEIWPSLKPTIQDLQRLLSQ----FTEV 539

Query: 362 SFRHNRRETNMATYKLAQRGKHLL 379
            F    RE N    ++A+     L
Sbjct: 540 KFVFIPREGNTLAERVARESLSFL 556

[Close]

BLAST of Tan0016346 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-08
Identity = 27/76 (35.53%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 31  SWRICHPLWMSLSIWKVYRRRYFKSGNFLQVTLGTNPSYTWRSILWGRDLFKHDYRWKVG 90
           S+RI H     LS  ++ R RYF   + ++ ++GT PSY WRSI+ GR+L        +G
Sbjct: 74  SFRIIHQPHTLLS--RLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIG 133

Query: 91  NGHQINIKEDPWLLAE 107
           +G    +  D W++ E
Sbjct: 134 DGIHTKVWLDRWIMDE 147

[Close]

BLAST of Tan0016346 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-07
Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 242 WEPPNKGWWKLNTDASWCSINNHGGVGWILREWTGRIMRAGHRHTTDRWSITILELYGIL 301
           W+ P   W K NTDA+W   N   G+GWILR  +G ++  G R      ++   EL  + 
Sbjct: 137 WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALR 196

Query: 302 TGLSFIQEYN-TPLLVESDSWEAIRLINGDD 332
             +  +  +N   ++ ESD+   + L+N DD
Sbjct: 197 WAVLTMSRFNYKRIIFESDAQALVNLLNSDD 227

[Close]

BLAST of Tan0016346 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 2.9e-06
Identity = 38/131 (29.01%), Postives = 52/131 (39.69%), Query Frame = 0


Query: 242 WEPPNKGWWKLNTDASWCSINNHGGVGWILREWTGRIMRAGHRHTTDRWSITILELYGIL 301
           W PP +GW K N D+ +   + +   GW +RE  G I+  G+            E  G L
Sbjct: 206 WNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFL 265

Query: 302 TGLSFIQEYNTPLL-VESDSWEAIRLINGDDNDKTKAGDFAKKIRQRAISWTNISFRHNR 361
             L  I  +    +  ESDS   + LIN  + D +  G     IR   +     S     
Sbjct: 266 HALQVIWAHGLRYVWFESDSKSLVTLINNGE-DHSLLGTLIYDIRHWMLKLPYCSLEFVN 325

Query: 362 RETNMATYKLA 372
           RE N A   LA
Sbjct: 326 RERNSAADALA 335

The following BLAST results are available for this feature:

BLAST of Tan0016346 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93295	5.6e-07	35.53	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Tan0016346 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155286.1	4.7e-35	50.65	uncharacterized protein LOC111022423 [Momordica charantia]	[more]
CAB4263564.1	6.3e-32	26.55	unnamed protein product [Prunus armeniaca]	[more]
XP_015388020.1	8.3e-32	26.98	uncharacterized protein LOC107177951 [Citrus sinensis]	[more]
CAB4277970.1	3.3e-28	24.89	unnamed protein product [Prunus armeniaca]	[more]
CAB4277969.1	3.3e-28	24.89	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Tan0016346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRA0	2.3e-35	50.65	uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J5TIF9	3.1e-32	26.55	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A2N9IYC8	9.9e-31	28.29	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A6J5UN51	1.6e-28	24.89	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5UN24	1.6e-28	24.89	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS28123 PE=4 S...	[more]

BLAST of Tan0016346 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	1.1e-10	28.03	Ribonuclease H-like superfamily protein	[more]
ATMG00310.1	4.0e-08	35.53	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT2G34320.1	1.2e-07	31.87	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G02650.1	2.9e-06	29.01	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 248..375 e-value: 4.9E-12 score: 48.0
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 253..373 e-value: 5.7E-17 score: 61.7
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 240..384
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 252..371 e-value: 2.92087E-14 score: 66.954
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 248..374

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016346.1	Tan0016346.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity