Tan0016335 (gene) Snake gourd v1

Overview


Name	Tan0016335
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG02: 34192184 .. 34192626 (-)
RNA-Seq Expression	Tan0016335
Synteny	Tan0016335

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACTCCAAATTGTACACCAAGAGGATTGACAACTTGAGGATGCCCACAGGGTACCAACCTCCAAAATTTCAACAGTTCGACGGGAAGGGCAACCCAAAGCAACACGTTGCACATTTCGTTGAAACTGGTGAAAATGCAGTGACACACGACGATCTCTTGATGAAACAATTCGTGCGTACCTTGAAAGGAAATACTTTTGATTGGTACATTAACTTAGAACTAGAGAAAATTGACAGCTGGGAGCAGTTCGAGAGAGAATTCCCAAATCGCTTCACAACACAAGGAGAAGTGTGAGTATGATGGAACTCACCAATGCCAAACAACGTAAAGGTGAACCTGACATCAATTATATCAATCGCTGGAGGGCTTTAAGCCTCAACTATAAAGACCGACTCACAGAGGTATCTGCCGTTCAGATGTGCACCCAAGGTATGCACTAG

mRNA sequence

ATGTACTCCAAATTGTACACCAAGAGGATTGACAACTTGAGGATGCCCACAGGGTACCAACCTCCAAAATTTCAACAGTTCGACGGGAAGGGCAACCCAAAGCAACACGTTGCACATTTCGTTGAAACTGGTGAAAATGCAGTGACACACGACGATCTCTTGATGAAACAATTCGTGCGTACCTTGAAAGGAAATACTTTTGATTGGAGAAGTGTGAGTATGATGGAACTCACCAATGCCAAACAACGTAAAGGTGAACCTGACATCAATTATATCAATCGCTGGAGGGCTTTAAGCCTCAACTATAAAGACCGACTCACAGAGGTATCTGCCGTTCAGATGTGCACCCAAGGTATGCACTAG

Coding sequence (CDS)

ATGTACTCCAAATTGTACACCAAGAGGATTGACAACTTGAGGATGCCCACAGGGTACCAACCTCCAAAATTTCAACAGTTCGACGGGAAGGGCAACCCAAAGCAACACGTTGCACATTTCGTTGAAACTGGTGAAAATGCAGTGACACACGACGATCTCTTGATGAAACAATTCGTGCGTACCTTGAAAGGAAATACTTTTGATTGGAGAAGTGTGAGTATGATGGAACTCACCAATGCCAAACAACGTAAAGGTGAACCTGACATCAATTATATCAATCGCTGGAGGGCTTTAAGCCTCAACTATAAAGACCGACTCACAGAGGTATCTGCCGTTCAGATGTGCACCCAAGGTATGCACTAG

Protein sequence

MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVRTLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH

Homology

[Close]

BLAST of Tan0016335 vs. NCBI nr
Match: TYK15513.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 9.5e-48
Identity = 93/120 (77.50%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVR 60
           MYSK YTKRIDNLR+P GYQPPKFQQFDGKGNPK+H+AHFVET ENA +  D L++QFVR
Sbjct: 19  MYSKPYTKRIDNLRIPLGYQPPKFQQFDGKGNPKKHIAHFVETCENAGSRGDQLVRQFVR 78

Query: 61  TLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH 120
            LKGN F+W  VSMMELTN KQRKGEP I+YINRWRALSL+ KD+LTE+SAV+MCTQG+H
Sbjct: 79  RLKGNAFEWHVVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCTQGIH 138

[Close]

BLAST of Tan0016335 vs. NCBI nr
Match: KAA0055534.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 1.8e-46
Identity = 99/147 (67.35%), Postives = 108/147 (73.47%), Query Frame = 0


Query: 1   MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVR 60
           +YSK YTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ET E A T  DLL+KQFVR
Sbjct: 125 LYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVR 184

Query: 61  TLKGNTFDW---------------------------RSVSMMELTNAKQRKGEPDINYIN 120
           TLKGN FDW                           R VSMMELTN +Q+KGE  I+YIN
Sbjct: 185 TLKGNAFDWYIDLEPKSIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYIN 244

[Close]

BLAST of Tan0016335 vs. NCBI nr
Match: KAA0032587.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20898.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 1.8e-46
Identity = 95/120 (79.17%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVR 60
           MYSK YTKRIDNLRMP  YQPPKFQQFDGKGNPKQH+AHFVET ENA +  D L++QFVR
Sbjct: 66  MYSKPYTKRIDNLRMPLRYQPPKFQQFDGKGNPKQHIAHFVETRENARSRGDQLVRQFVR 125

Query: 61  TLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH 120
           +LKGN F  R+VSMMELTN KQRKGEP I+YINRWRALSL+ KDRLTE+S+V+MCTQGMH
Sbjct: 126 SLKGNAFK-RTVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDRLTELSSVEMCTQGMH 184

[Close]

BLAST of Tan0016335 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 99/147 (67.35%), Postives = 109/147 (74.15%), Query Frame = 0


Query: 1   MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVR 60
           MYSK YTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHFVET ENA +  D L++QFVR
Sbjct: 188 MYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVR 247

Query: 61  TLKGNTFDW---------------------------RSVSMMELTNAKQRKGEPDINYIN 120
           +LKGN F+W                           R+VSMMELTN KQRKGEP I+YIN
Sbjct: 248 SLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYIN 307

[Close]

BLAST of Tan0016335 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 99/147 (67.35%), Postives = 109/147 (74.15%), Query Frame = 0


Query: 1   MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVR 60
           MYSK YTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHFVET ENA +  D L++QFVR
Sbjct: 188 MYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVR 247

Query: 61  TLKGNTFDW---------------------------RSVSMMELTNAKQRKGEPDINYIN 120
           +LKGN F+W                           R+VSMMELTN KQRKGEP I+YIN
Sbjct: 248 SLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYIN 307

[Close]

BLAST of Tan0016335 vs. ExPASy TrEMBL
Match: A0A5D3CUF5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4701G00010 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.6e-48
Identity = 93/120 (77.50%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVR 60
           MYSK YTKRIDNLR+P GYQPPKFQQFDGKGNPK+H+AHFVET ENA +  D L++QFVR
Sbjct: 19  MYSKPYTKRIDNLRIPLGYQPPKFQQFDGKGNPKKHIAHFVETCENAGSRGDQLVRQFVR 78

Query: 61  TLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH 120
            LKGN F+W  VSMMELTN KQRKGEP I+YINRWRALSL+ KD+LTE+SAV+MCTQG+H
Sbjct: 79  RLKGNAFEWHVVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCTQGIH 138

[Close]

BLAST of Tan0016335 vs. ExPASy TrEMBL
Match: A0A5A7STA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00340 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 8.7e-47
Identity = 95/120 (79.17%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVR 60
           MYSK YTKRIDNLRMP  YQPPKFQQFDGKGNPKQH+AHFVET ENA +  D L++QFVR
Sbjct: 66  MYSKPYTKRIDNLRMPLRYQPPKFQQFDGKGNPKQHIAHFVETRENARSRGDQLVRQFVR 125

Query: 61  TLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCTQGMH 120
           +LKGN F  R+VSMMELTN KQRKGEP I+YINRWRALSL+ KDRLTE+S+V+MCTQGMH
Sbjct: 126 SLKGNAFK-RTVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDRLTELSSVEMCTQGMH 184

[Close]

BLAST of Tan0016335 vs. ExPASy TrEMBL
Match: A0A5A7UK68 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00050 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 8.7e-47
Identity = 99/147 (67.35%), Postives = 108/147 (73.47%), Query Frame = 0


Query: 1   MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVR 60
           +YSK YTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ET E A T  DLL+KQFVR
Sbjct: 125 LYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVR 184

Query: 61  TLKGNTFDW---------------------------RSVSMMELTNAKQRKGEPDINYIN 120
           TLKGN FDW                           R VSMMELTN +Q+KGE  I+YIN
Sbjct: 185 TLKGNAFDWYIDLEPKSIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYIN 244

[Close]

BLAST of Tan0016335 vs. ExPASy TrEMBL
Match: A0A5A7T9K9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00280 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 98/147 (66.67%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 1   MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVR 60
           MYSK YTKRID+LRMP GYQPPKFQQFDGKGNPKQH+AHFVET ENA +  D L++QFVR
Sbjct: 141 MYSKPYTKRIDSLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGDQLVRQFVR 200

Query: 61  TLKGNTFDW---------------------------RSVSMMELTNAKQRKGEPDINYIN 120
           +LKGNTF+W                           R+VSMMELTN KQRKGEP I+YIN
Sbjct: 201 SLKGNTFEWYTDLEPEVIDSWEQLEKEFLNRFYSIRRTVSMMELTNTKQRKGEPVIDYIN 260

[Close]

BLAST of Tan0016335 vs. ExPASy TrEMBL
Match: A0A5D3CK73 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00300 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 91/116 (78.45%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MYSKLYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHVAHFVETGENAVTHDDLLMKQFVR 60
           MYSKLYTKRIDNLRMP GYQPPKFQQFDGKGN KQH+AHFVET EN  +  D L++QFVR
Sbjct: 19  MYSKLYTKRIDNLRMPLGYQPPKFQQFDGKGNLKQHIAHFVETCENTGSRGDQLVRQFVR 78

Query: 61  TLKGNTFDWRSVSMMELTNAKQRKGEPDINYINRWRALSLNYKDRLTEVSAVQMCT 117
           +LKGN F+WR VSMMELTN KQRKGEP I+YINRWRALSL+ KD+LTE+SA++MCT
Sbjct: 79  SLKGNAFEWRVVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDKLTELSAIEMCT 134

The following BLAST results are available for this feature:

BLAST of Tan0016335 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016335 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15513.1	9.5e-48	77.50	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055534.1	1.8e-46	67.35	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032587.1	1.8e-46	79.17	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20898.1 ty3-gyp...	[more]
XP_031739134.1	2.3e-46	67.35	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	2.3e-46	67.35	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]

BLAST of Tan0016335 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CUF5	4.6e-48	77.50	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7STA5	8.7e-47	79.17	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UK68	8.7e-47	67.35	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T9K9	1.5e-46	66.67	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CK73	1.9e-46	78.45	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Tan0016335 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016335.1	Tan0016335.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding