Tan0016333 (gene) Snake gourd v1

Overview
NameTan0016333
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG01: 14609898 .. 14612576 (+)
RNA-Seq ExpressionTan0016333
SyntenyTan0016333
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACCCCTCCATCCCTCTTGTCTCTCACTATTCATTCCGCCATTCATAATCTCTCTCGTATCTCCGATCTCTCCTTTCTCCCTGATCACATCGTCCTCGACCTTTTCCTGGTACTTCTCTCTCTCTCTCTCTCTTACAGATATGGTCTAATTCGTCTTCCTCTTGCTTTGAATTTGATCGCTATGTGTAAATTTCCCACTTACCCTTCACTTCAATGCCTTTTCTCTTCTGGGTTTTTTTCTATTTTTGAATCTTGGATTGTGTTTCGTCTGGATTTTGGATCGTGGTGATTGCTTTCTGAATTGGGGACTTGGGGTTTGTTGATTGTTTATTACGTTTGGTCAACGCTATCTACAATCTTGTGCTTTCATCAAGATTTATGATTCCACCCTTTTGGTCTAGTGATTGAAAAATCTGAGGAAACCTTCAATAGGTGGAGAGTGGAGTTTTGTTTTGTAGAAATGTCAATGCAAGTTTAGATGATTCTGTTTTTACTATTCTTTGTAATTATATCAAGGCTAGATATATCTTCTCCGATATGGAATGTTTCCACAGTTTTGAATCTTGATATTTTTATCCTGTCCATGAGTGATTTTTTTTTTTTTAGTTTGACTTTCGATGTTGAAGTTAATTTTCTTTTCGAAGATTCTATACTATATCGGTTATTGTATTTACTGCATTCAGTTATTTGGGAAATTATAATTGTAACTTGTATGTAGAAGCGTTATATGAGAGTTGTTAATTGTAACTTATATATACAAGTGTTGTATAAGCTTTACAATTAATCGATCTAGAATGGTCAATATACGATTTTATGAGTTTGAAATAGAATGAACTTTTGCCATCTATACTAATTTTTAGCTATGTATGCATGCTATTTTTGGCTTGAAGGAATAGAATTGACTCTGGGCCCTGGCTATTTGAGAATTTTTTTTATTGTATTTTATTCTACACTTGCAAGGCAGAAGAAGTATATGTTAGTCTACTCGTGAAATTGGCATTTGGTAATTTTGGTGTTATGTTGTAGTGAAATTTTATTTAACTATTCATAAAGTTTACATGGACTTCATGATCCACATTTTTAAACGTCTTACTTATTTTCATCAGAATTTGATGTTTTTTTTTTACCCAAATGAAAATCATATCCACAATAGTTATCCTTTTTATTATTATTTTTTCAAATAAGAAATCATTGGACCGAAGAGTTATCCGATTAGAGGGGAGGGATGACTGGAAGTTAAATCCAAGCTCAAGTTGGTGAGATTGAAATAATGCTCTCCAACTAGCCAAAACAAAAAAGGAGCAGCTGTGAAGCTGTTAGATATATAAGGTTCCGAAGCATTCAAAGAACCTAGTTTGTTTTTATGCCTCCTCAGCATTACCTCTGTTATCTAAAAAACATTGTCCTATTTCTAGCATTTTGGATTTCTCAACATTTTATAACAAATTGTCGTAAGCCCTTTGTCTTGGCTTTCTCATTAGATGGAAGGAACGTGATAATAAAGGGGAAGAAATCTCCAAAAGAGGGCAGTGAATTTCAAATAATATTGAAAGCCCTCAAAGTTTTTCTCAAATAGTTCTTGCAAAGGGACATGTTAATTGATTACTGCTTTTAGCCCACCTTATTACACATGAAACATCTTTTAATAGTTAAGGCACATCCAATGCTGTATTTTCTGAATGCATCGTTGGTATTAAGTTTTTGTCTTTTTTAGCTGTCATCTGTAAGAAATCTTTTTCAGCCTTAAATGGCTTAACCTTTCAGATGAAACTGCAACTTGGTTTGATTTTTTTTCCCCTCCATTTCCTTTTTCCTAAATGGCACGCATGGAACAGCATGAAAAGAACCCTGAAATCATTGGCTTGCAAATTAGGGTCAAAGGGTTCCCTAAACTGATAGCAATGAGGACAATTTACTATCTCCTTCTCTCTCATATTCCCTTTGAACTGTAGCCATAGGATCTAGGAGAAGACTTTGTGAGAAGCCCGTTGCAGTAATAGACATGCAGCATCGGACCTAGGGCAAATGATGGAGAAAGGAAAATTTTGAAGCTGCTCATCTTCCAAAAGGGAAGACCCTGGAATGATTTCCATTTATGGAAGAAGTGATCTGTATGCAATAATGATTGCATGTGGAAATGAAGGCCAAGGTATTTAGGTGATACCTCATTGGTTTCTGTGGTTAGTGAGATCGTTGTGCACAGTATTCAAATCTATACTGGAAATAGCCGATTAGCTAGGAATTTTTTCCATTTAATGTTGAATGTATCAAAAGTTGCTTAATGTTATTTTGTTGCATTGCAATACCAAAAAATGAAATTATTGCTTCACCGCTAGATATCTTTTCTGTCTACATTTTATGTTGAACCTTCTTGCTGACTCTTAGTTTGTGACGAGTTACTGAGTAGATGAAATACTTCCATGATGCAGGAAACTTTAAGGGCTGGAAAATTAAACGAGAGGGTTTTAAAGTTGTTCGTGGCAACTGGAAAAGATGAAGTTCTTTCACTCATTGAGGCATTCAATATCCAGCAAATTGTCACCCCTGTTCTTCCTACCAGTAAGAAGAATCTAGATATACCAATGTTCTGATACTCTATTGATTTTGCGGTGTGTTTATCCATTTCTCTTTCTTACACTGAATACTTGATGCAGGGTGTTCAGAAAAATTCTAG

mRNA sequence

ATGACAACCCCTCCATCCCTCTTGTCTCTCACTATTCATTCCGCCATTCATAATCTCTCTCGTATCTCCGATCTCTCCTTTCTCCCTGATCACATCGTCCTCGACCTTTTCCTGGAAACTTTAAGGGCTGGAAAATTAAACGAGAGGGTTTTAAAGTTGTTCGTGGCAACTGGAAAAGATGAAGTTCTTTCACTCATTGAGGCATTCAATATCCAGCAAATTGTCACCCCTGTTCTTCCTACCAGGTGTTCAGAAAAATTCTAG

Coding sequence (CDS)

ATGACAACCCCTCCATCCCTCTTGTCTCTCACTATTCATTCCGCCATTCATAATCTCTCTCGTATCTCCGATCTCTCCTTTCTCCCTGATCACATCGTCCTCGACCTTTTCCTGGAAACTTTAAGGGCTGGAAAATTAAACGAGAGGGTTTTAAAGTTGTTCGTGGCAACTGGAAAAGATGAAGTTCTTTCACTCATTGAGGCATTCAATATCCAGCAAATTGTCACCCCTGTTCTTCCTACCAGGTGTTCAGAAAAATTCTAG

Protein sequence

MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERVLKLFVATGKDEVLSLIEAFNIQQIVTPVLPTRCSEKF
Homology
[Close]
BLAST of Tan0016333 vs. NCBI nr
Match: KAG6577325.1 (hypothetical protein SDJN03_24899, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-38
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERVLKLFVATGKD 60
          MTTPPSLLSLTIHSAIHNLSRISDLSFLPDH+VLDLFLETLRAGKLNERVLKLFVATGKD
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPTRCSEKF 88
          EVLSLIEAFNIQQIVTPVLPTRCSEKF
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPTRCSEKF 87

[Close]
BLAST of Tan0016333 vs. NCBI nr
Match: XP_038904960.1 (uncharacterized protein LOC120091153 isoform X2 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 4.2e-37
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERVLKLFVATGKD 60
          MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNER+LKLFVA+GKD
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERILKLFVASGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPTRCSEKF 88
          EVL LIEAFNIQQ+VTPVLPTRCSEKF
Sbjct: 61 EVLLLIEAFNIQQVVTPVLPTRCSEKF 87

[Close]
BLAST of Tan0016333 vs. NCBI nr
Match: XP_038904959.1 (uncharacterized protein LOC120091153 isoform X1 [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 1.0e-35
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFL-ETLRAGKLNERVLKLFVATGK 60
          MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFL ETLRAGKLNER+LKLFVA+GK
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLQETLRAGKLNERILKLFVASGK 60

Query: 61 DEVLSLIEAFNIQQIVTPVLPTRCSEKF 88
          DEVL LIEAFNIQQ+VTPVLPTRCSEKF
Sbjct: 61 DEVLLLIEAFNIQQVVTPVLPTRCSEKF 88

[Close]
BLAST of Tan0016333 vs. NCBI nr
Match: KAG7015413.1 (putative UDP-arabinopyranose mutase 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.6 bits (392), Expect = 1.9e-34
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERVLKLFVATGKD 60
          MTTPPSLLSLTIHSAIHNLSRISDLSFLPDH+VLDLFLETLRAGKLNERVLKLFVATGKD
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPTR 83
          EVLSLIEAFNIQQIVTPVLPT+
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPTK 82

[Close]
BLAST of Tan0016333 vs. NCBI nr
Match: XP_022984322.1 (probable UDP-arabinopyranose mutase 5 isoform X2 [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 3.3e-34
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERVLKLFVATGKD 60
          MTTPPSLLSLTIHSAIHNLSRISDLSFLPDH+VLDLFLETLRAGKLNERVLKLFVATGKD
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPT 82
          EVLSLIEAFNIQQIVTPVLPT
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPT 81

[Close]
BLAST of Tan0016333 vs. ExPASy TrEMBL
Match: A0A6J1J1W3 (probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482658 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERVLKLFVATGKD 60
          MTTPPSLLSLTIHSAIHNLSRISDLSFLPDH+VLDLFLETLRAGKLNERVLKLFVATGKD
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPT 82
          EVLSLIEAFNIQQIVTPVLPT
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPT 81

[Close]
BLAST of Tan0016333 vs. ExPASy TrEMBL
Match: A0A6J1EMJ2 (probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435949 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERVLKLFVATGKD 60
          MTTPPSLLSLTIHSAIHNLSRISDLSFLPDH+VLDLFLETLRAGKLNERVLKLFVATGKD
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPT 82
          EVLSLIEAFNIQQIVTPVLPT
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPT 81

[Close]
BLAST of Tan0016333 vs. ExPASy TrEMBL
Match: A0A6J1C7X9 (uncharacterized protein LOC111008243 OS=Momordica charantia OX=3673 GN=LOC111008243 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-34
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERVLKLFVATGKD 60
          MT PPSLLSLTIHSAI NLS ISDLSFLPDHIVL+LFL+TLRAGKLNERVL+LFVATG D
Sbjct: 1  MTPPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60

Query: 61 EVLSLIEAFNIQQIVTPVLPTRCSEKF 88
          EVLSLIEAFNIQQIVTPVLPTRCSEKF
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPTRCSEKF 87

[Close]
BLAST of Tan0016333 vs. ExPASy TrEMBL
Match: A0A0A0KVY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605100 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERVLKLFVATGKD 60
          MTTPPSLLSLTIHSAI NLS ISDLSFLPDHIVL LFLETL+AGKLNERVLKLFVA+GKD
Sbjct: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPTRCSEKF 88
          EVLSLI  F IQQIVTPVLPTRCSEKF
Sbjct: 61 EVLSLIGEFKIQQIVTPVLPTRCSEKF 87

[Close]
BLAST of Tan0016333 vs. ExPASy TrEMBL
Match: A0A1S4DX21 (probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489119 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERVLKLFVATGKD 60
          MTTPPSLLSLTIHSAI NLS ISDLSFLPDHIVL LFLETLRAGKLNERVLKLFVA+GKD
Sbjct: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLRAGKLNERVLKLFVASGKD 60

Query: 61 EVLSLIEAFNIQQIVTPVLPT 82
          EVLSLI AFNIQQIVTPVLPT
Sbjct: 61 EVLSLIGAFNIQQIVTPVLPT 81

[Close]
BLAST of Tan0016333 vs. TAIR 10
Match: AT4G30390.1 (unknown protein; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 119.4 bits (298), Expect = 1.4e-27
Identity = 58/84 (69.05%), Postives = 73/84 (86.90%), Query Frame = 0 

Query: 4  PPSLLSLTIHSAIHNLSRISDLSFLPDHIVLDLFLETLRAGKLNERVLKLFVATGKDEVL 63
          PPSLLSLT+++A+ N+SRI+DLS LPDHIVLDLF  TL AGKLNERVL+LF+A+G +EVL
Sbjct: 5  PPSLLSLTVNAAVLNISRINDLSHLPDHIVLDLFARTLEAGKLNERVLRLFMASGNEEVL 64

Query: 64 SLIEAFNIQQIVTPVLPTRCSEKF 88
          S+I+A  I+  V+P+LPTRC EKF
Sbjct: 65 SVIDALKIKINVSPILPTRCDEKF 88

The following BLAST results are available for this feature:
BLAST of Tan0016333 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0016333 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577325.12.2e-3898.85hypothetical protein SDJN03_24899, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038904960.14.2e-3795.40uncharacterized protein LOC120091153 isoform X2 [Benincasa hispida][more]
XP_038904959.11.0e-3594.32uncharacterized protein LOC120091153 isoform X1 [Benincasa hispida][more]
KAG7015413.11.9e-3497.56putative UDP-arabinopyranose mutase 5 [Cucurbita argyrosperma subsp. argyrosperm... [more]
XP_022984322.13.3e-3498.77probable UDP-arabinopyranose mutase 5 isoform X2 [Cucurbita maxima][more]
BLAST of Tan0016333 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J1W31.6e-3498.77probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1EMJ21.6e-3498.77probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1C7X92.1e-3491.95uncharacterized protein LOC111008243 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A0A0KVY44.0e-3390.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605100 PE=4 SV=1[more]
A0A1S4DX211.4e-3093.83probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
BLAST of Tan0016333 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G30390.11.4e-2769.05unknown protein; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016333.1Tan0016333.1mRNA