Tan0016330 (gene) Snake gourd v1

Overview
NameTan0016330
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionhistidine-rich glycoprotein-like
LocationLG01: 107913931 .. 107915113 (+)
RNA-Seq ExpressionTan0016330
SyntenyTan0016330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATAATGTAATGTTTGAAGCACCAAGTAGCCTAATTACAAAGCATAACACTTGCATTTTTCTAACTGATCAGCTTTGTTAACCAAAAAATGGCCAACTCTAAAACCCTTCTCCTTCTCGGCCTCCTCCTCGCTCTTCTCTTCGTCTCCTCTCGTGTCTCGGCTCGTCTACTCGGTTAGTTTGCTCGAAACCGAACTCTCTCTTTCTCATTATTTTGTTAAGAACATATTAAAATTAATAAGATCAAATTTAATTTGTTTTCATGTTACTAGTTTTTGTGTATTATGCTTTGTAATTTAGTGTGATATTAAAGTATAGATCATAAACTTAAATTTGTTGTTGTGTTTCTCTTCATTTTGTAAAATAGTCAGTAAGTTGAATCTCATATTGATTATCAAACTCACATGCGAATGAATAGTCGAATTTAGATGGATTTTGTAATTATATTAATTTTTTTATTTAGTTAAGCTTTTAGGTCTATAGCAATAATTTAGCAATATTATTTGAACTCTGTTTTTATTCATTATATATGTAGAGGAAAAGAAAGGTGATGTAGAGAGTGACGGTCATGGACACCATGACCACCACGACCACGGCCACCATGACCACGGCCACCATGGTCATGACCACGACGATGCTGATGTCGATAGCTTGGACGATCACCATGGACACCACGACCATGACCACGACCACGACCACGGGCACCACCACGGTGGACACCACGGTCACGATGCCGACGTAAATGACTTAGATGGTCACCATGGACACCATGACCACGGACATCACGACCATGGACACCACGGCCACGACCACGATGCAGAAACTCAAGGGGTTAAGAATTAGAGACCTAAAATCAGCACCCTGTCTTCTACATGGTTGGTAATAATAAAAATAGGGTACGATGAAATAAATTATGTTTTGTGTGTGTGTTTTAATTTAAATAAAGCAAAGATTGCTGTATGAAATGCTAGTTTGGTTTGTTGTAATTTCCGATCCTTATGGTTTTTATAAATATGTAATATCAAAACTATAAAGTTGATTTGTTTTGTATGCTGCTGGTTATTTCATTATTATTGGGTTTGTTTATGATTTTGGTGCCTTTCTCTTTAACTCTCATTTCAAACGCTGTCTATATTTTCCTTCTTTGTAGAGTATTACAATTGAAATAAGAATAAAGATTTAA

mRNA sequence

TGATAATGTAATGTTTGAAGCACCAAGTAGCCTAATTACAAAGCATAACACTTGCATTTTTCTAACTGATCAGCTTTGTTAACCAAAAAATGGCCAACTCTAAAACCCTTCTCCTTCTCGGCCTCCTCCTCGCTCTTCTCTTCGTCTCCTCTCGTGTCTCGGCTCGTCTACTCGAGGAAAAGAAAGGTGATGTAGAGAGTGACGGTCATGGACACCATGACCACCACGACCACGGCCACCATGACCACGGCCACCATGGTCATGACCACGACGATGCTGATGTCGATAGCTTGGACGATCACCATGGACACCACGACCATGACCACGACCACGACCACGGGCACCACCACGGTGGACACCACGGTCACGATGCCGACGTAAATGACTTAGATGGTCACCATGGACACCATGACCACGGACATCACGACCATGGACACCACGGCCACGACCACGATGCAGAAACTCAAGGGGTTAAGAATTAGAGACCTAAAATCAGCACCCTGTCTTCTACATGGTTGGTAATAATAAAAATAGGGTACGATGAAATAAATTATGTTTTGTGTGTGTGTTTTAATTTAAATAAAGCAAAGATTGCTGTATGAAATGCTAGTTTGGTTTGTTGTAATTTCCGATCCTTATGGTTTTTATAAATATGTAATATCAAAACTATAAAGTTGATTTGTTTTGTATGCTGCTGGTTATTTCATTATTATTGGGTTTGTTTATGATTTTGGTGCCTTTCTCTTTAACTCTCATTTCAAACGCTGTCTATATTTTCCTTCTTTGTAGAGTATTACAATTGAAATAAGAATAAAGATTTAA

Coding sequence (CDS)

ATGGCCAACTCTAAAACCCTTCTCCTTCTCGGCCTCCTCCTCGCTCTTCTCTTCGTCTCCTCTCGTGTCTCGGCTCGTCTACTCGAGGAAAAGAAAGGTGATGTAGAGAGTGACGGTCATGGACACCATGACCACCACGACCACGGCCACCATGACCACGGCCACCATGGTCATGACCACGACGATGCTGATGTCGATAGCTTGGACGATCACCATGGACACCACGACCATGACCACGACCACGACCACGGGCACCACCACGGTGGACACCACGGTCACGATGCCGACGTAAATGACTTAGATGGTCACCATGGACACCATGACCACGGACATCACGACCATGGACACCACGGCCACGACCACGATGCAGAAACTCAAGGGGTTAAGAATTAG

Protein sequence

MANSKTLLLLGLLLALLFVSSRVSARLLEEKKGDVESDGHGHHDHHDHGHHDHGHHGHDHDDADVDSLDDHHGHHDHDHDHDHGHHHGGHHGHDADVNDLDGHHGHHDHGHHDHGHHGHDHDAETQGVKN
Homology
BLAST of Tan0016330 vs. NCBI nr
Match: KAG7024647.1 (hypothetical protein SDJN02_13465, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 103/146 (70.55%), Postives = 107/146 (73.29%), Query Frame = 0

Query: 1   MANSKTLLLLGLLLALLFVSSRVSARLLEEKKGDVESDGHGHHD--HHDHGHHDHGHHGH 60
           MA SKT LLLGLLLALLFVSS VSAR LEEKK DVESDGHGHHD  HHDHGHHDHGHHGH
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDGHGHHDHGHHDHGHHDHGHHGH 60

Query: 61  DHDDADVDSLDDHHGHHDHDHDHDHGHHHGGHHGHDADVNDLDGHHGHHD---------- 120
              DA+VD LD HHGH        HG  HGGHHGHDADV+DLDGHHGHHD          
Sbjct: 61  ---DANVDGLDGHHGH--------HGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDH 120

Query: 121 ---HGHHD-HGHHGHDHDAETQGVKN 131
              H HHD HGHHGHDHDA+ + VKN
Sbjct: 121 HDHHDHHDHHGHHGHDHDAKIEDVKN 135

BLAST of Tan0016330 vs. NCBI nr
Match: KAG6591765.1 (hypothetical protein SDJN03_14111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-32
Identity = 102/146 (69.86%), Postives = 107/146 (73.29%), Query Frame = 0

Query: 1   MANSKTLLLLGLLLALLFVSSRVSARLLEEKKGDVESDGHGHHD--HHDHGHHDHGHHGH 60
           MA SKT LLLGLLLALLF+SS VSAR LEEKK DVESDGHGHHD  HHDHGHHDHGHHGH
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHGHHDHGHHDHGHHDHGHHGH 60

Query: 61  DHDDADVDSLDDHHGHHDHDHDHDHGHHHGGHHGHDADVNDLDGHHGHHD---------- 120
              DA+VD LD HHGH        HG  HGGHHGHDADV+DLDGHHGHHD          
Sbjct: 61  ---DANVDGLDGHHGH--------HGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDH 120

Query: 121 ---HGHHD-HGHHGHDHDAETQGVKN 131
              H HHD HGHHGHDHDA+ + VKN
Sbjct: 121 HDHHDHHDHHGHHGHDHDAKIEDVKN 135

BLAST of Tan0016330 vs. NCBI nr
Match: XP_023536482.1 (histidine-rich glycoprotein-like [Cucurbita pepo subsp. pepo] >XP_023536484.1 histidine-rich glycoprotein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-31
Identity = 101/144 (70.14%), Postives = 105/144 (72.92%), Query Frame = 0

Query: 1   MANSKTLLLLGLLLALLFVSSRVSARLLEEKKGDVESDGHGHHDHHDHGHHDHGHHGHDH 60
           MA SKT LLLGLLLALLFVSS VSAR LEEKK DVESDGHG   HHDHGHHDHGHHGH  
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDGHG---HHDHGHHDHGHHGH-- 60

Query: 61  DDADVDSLDDHHGHHDHDHDHDHGHHHGGHHGHDADVNDLDGHHGHHD------------ 120
            DA+VD LD HHGH        HG  HGGHHGHDADV+DLDGHHGHHD            
Sbjct: 61  -DANVDGLDGHHGH--------HGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHD 120

Query: 121 -HGHHD-HGHHGHDHDAETQGVKN 131
            H HHD HGHHGHDHDA+T+ VKN
Sbjct: 121 HHDHHDHHGHHGHDHDAKTEDVKN 130

BLAST of Tan0016330 vs. NCBI nr
Match: XP_022935989.1 (histidine-rich glycoprotein-like [Cucurbita moschata])

HSP 1 Score: 144.8 bits (364), Expect = 5.1e-31
Identity = 99/138 (71.74%), Postives = 106/138 (76.81%), Query Frame = 0

Query: 1   MANSKTLLLLGLLLALLFVSSRVSARLLEEKKGDVESDGHGHHDHHDHGHHDHGHHGHDH 60
           MA SKT LLLGLLLALLF+SS VSAR LEEKK DVESDGHG   HHDHGHHDHGHHGH  
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHG---HHDHGHHDHGHHGH-- 60

Query: 61  DDADVDSLDDHHGHHDHDHDHDHGHHHGGHHGHDADVNDLDGHHGHHD-------HGHHD 120
            DA+VD LD   GHH+H     HG  HGGHHGHDAD++DLDGHHGHHD       H HHD
Sbjct: 61  -DANVDGLD---GHHEH-----HGGGHGGHHGHDADIDDLDGHHGHHDHHDHHDHHDHHD 120

Query: 121 -HGHHGHDHDAETQGVKN 131
            HGHHGHDHDA+T+ VKN
Sbjct: 121 HHGHHGHDHDAKTEDVKN 124

BLAST of Tan0016330 vs. NCBI nr
Match: XP_038900076.1 (histidine-rich glycoprotein-like [Benincasa hispida])

HSP 1 Score: 139.0 bits (349), Expect = 2.8e-29
Identity = 102/140 (72.86%), Postives = 106/140 (75.71%), Query Frame = 0

Query: 1   MANSKTLLLLGLLLALLFVSSRVSARLLEEKKGDVESDGHGH------HDHHDHGH--HD 60
           MA SKTLL+LGLLLALLFVSS VSARLLEE KG VESD HGH      H HHDHGH  HD
Sbjct: 1   MAYSKTLLVLGLLLALLFVSSHVSARLLEEDKGGVESDHHGHHHHDHGHHHHDHGHHDHD 60

Query: 61  HGHHGHDHDDADVDSLDDHHGHHDHDHDHDHGHHHGGHHGHDADVNDLDGHHGH-HDHGH 120
           HGHHGHDH DA+VD LD HHGHH   H      HHGGHHGHDA+VNDLDGHH H HDHGH
Sbjct: 61  HGHHGHDH-DANVDGLDGHHGHHGGGHG-----HHGGHHGHDANVNDLDGHHHHDHDHGH 120

Query: 121 HDHGH-HGHDHDAETQGVKN 131
           HDHGH HGH    +TQ VKN
Sbjct: 121 HDHGHDHGHHGHDQTQSVKN 134

BLAST of Tan0016330 vs. ExPASy TrEMBL
Match: A0A6J1F6Z7 (histidine-rich glycoprotein-like OS=Cucurbita moschata OX=3662 GN=LOC111442725 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.5e-31
Identity = 99/138 (71.74%), Postives = 106/138 (76.81%), Query Frame = 0

Query: 1   MANSKTLLLLGLLLALLFVSSRVSARLLEEKKGDVESDGHGHHDHHDHGHHDHGHHGHDH 60
           MA SKT LLLGLLLALLF+SS VSAR LEEKK DVESDGHG   HHDHGHHDHGHHGH  
Sbjct: 1   MAYSKTFLLLGLLLALLFISSHVSARFLEEKKSDVESDGHG---HHDHGHHDHGHHGH-- 60

Query: 61  DDADVDSLDDHHGHHDHDHDHDHGHHHGGHHGHDADVNDLDGHHGHHD-------HGHHD 120
            DA+VD LD   GHH+H     HG  HGGHHGHDAD++DLDGHHGHHD       H HHD
Sbjct: 61  -DANVDGLD---GHHEH-----HGGGHGGHHGHDADIDDLDGHHGHHDHHDHHDHHDHHD 120

Query: 121 -HGHHGHDHDAETQGVKN 131
            HGHHGHDHDA+T+ VKN
Sbjct: 121 HHGHHGHDHDAKTEDVKN 124

BLAST of Tan0016330 vs. ExPASy TrEMBL
Match: A0A6J1IKT3 (histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111476525 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.3e-29
Identity = 99/153 (64.71%), Postives = 103/153 (67.32%), Query Frame = 0

Query: 1   MANSKTLLLLGLLLALLFVSSRVSARLLEEKKGDVESDGHGHHDHHDHGHHDHGHHGHDH 60
           MA SKT LLLGLLLALLFVSS VSAR LEEKK DVESD HG   HHDHGHHDHGHHGH  
Sbjct: 1   MAYSKTFLLLGLLLALLFVSSHVSARFLEEKKSDVESDSHG---HHDHGHHDHGHHGH-- 60

Query: 61  DDADVDSLDDHHGHHDHDHDHDHGHHHGGHHGHDADVNDLDGHHGHHD------------ 120
            DA+VD LD HHGH        HG  HGGHHGHDADV+DLDGHHGHHD            
Sbjct: 61  -DANVDGLDGHHGH--------HGGGHGGHHGHDADVDDLDGHHGHHDHHDHHDHHDHHD 120

Query: 121 ----------HGHHD-HGHHGHDHDAETQGVKN 131
                     H HHD HGHHGHDHDA+ + VKN
Sbjct: 121 HHDHHDHHDHHDHHDHHGHHGHDHDAKMEDVKN 139

BLAST of Tan0016330 vs. ExPASy TrEMBL
Match: A0A6J1CBC6 (histidine-rich membrane protein KE4 homolog 2-like OS=Momordica charantia OX=3673 GN=LOC111009957 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 97/142 (68.31%), Postives = 102/142 (71.83%), Query Frame = 0

Query: 1   MANSKTLLLLGLLLALLFVSSRVSARLLEEKKGDVESDGHGHHDH-HDHGH----HDHGH 60
           MA SKT LLLGLLLALLFVSS VSARLL EKKG VE D H HHDH HDHGH    HDHGH
Sbjct: 1   MAYSKTTLLLGLLLALLFVSSHVSARLLAEKKGSVEGDDH-HHDHDHDHGHHDHDHDHGH 60

Query: 61  HGHDHD-------DADVDSLDDHHGHHDHDHDHDHGHHHGGHHGHDADVNDLDGHHGHHD 120
           H HDHD       DAD+DSLDDHHGH    H   HG HHGG HGHDAD++ LD HHGHHD
Sbjct: 61  HDHDHDHHGGHHHDADIDSLDDHHGH----HGGGHGGHHGGGHGHDADIDSLDDHHGHHD 120

Query: 121 HGHHDHGHHGHDHDAETQGVKN 131
           HGH       HDHD++T GVKN
Sbjct: 121 HGH-------HDHDSKTDGVKN 130

BLAST of Tan0016330 vs. ExPASy TrEMBL
Match: A0A6J1J1J4 (histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111480431 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 85/168 (50.60%), Postives = 91/168 (54.17%), Query Frame = 0

Query: 1   MANSKTLLLLGLLLALLFVSSRVSARLLEEKKGDVESDGHG---------HHDHHDHGHH 60
           MA SKT LLL LLLALL+VSS VSARLLEEKK  V+SD H          H+D HDH H 
Sbjct: 1   MAYSKTFLLLSLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYHYDGHDHDHE 60

Query: 61  -DHGHHGHDHDDADVDSLDDH--HGHHDHD----HDHDHGHH------------HGGHHG 120
            DH H  HDHDD D    DDH  H H+DHD     DHDH  H            H   H 
Sbjct: 61  DDHDHDKHDHDDHDDHDHDDHDDHDHNDHDKDDHDDHDHNDHDKDDHDDHDHDDHDHDHD 120

Query: 121 HDADVNDLDGHHGHHDHGH----------HDHGHHGHDHDAETQGVKN 131
           HDADVN LD HH  HDH H          HDH H   DHD +  G+KN
Sbjct: 121 HDADVNSLDDHHEQHDHDHDHDDDDHDHDHDHDHDDDDHDHDHDGIKN 168

BLAST of Tan0016330 vs. ExPASy TrEMBL
Match: A0A6J1FL97 (prostatic spermine-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111446778 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 85/172 (49.42%), Postives = 93/172 (54.07%), Query Frame = 0

Query: 1   MANSKTLLLLGLLLALLFVSSRVSARLLEEKKGDVESDGH-------------GHHDHHD 60
           MA SKT LLLGLLLALL+VSS VSARLLEEKK  V+SD H              H D HD
Sbjct: 1   MAYSKTFLLLGLLLALLYVSSHVSARLLEEKKSVVKSDDHDDDHDHGLGYRYDDHDDDHD 60

Query: 61  HGHHDH-GHHGHDHDDADVDSLDDH-------HGHHDHD----HDHDHGHH----HGGH- 120
           H  HDH  H  HDHDD D D  DDH       H H DHD     D+DH  H    H  H 
Sbjct: 61  HDKHDHDDHDDHDHDDHDKDDHDDHDKDDHDDHDHDDHDKDDHDDNDHDDHDKDDHDDHD 120

Query: 121 -----HGHDADVNDLDGHHGHHDHGH------HDHGHHGHDHDAET-QGVKN 131
                H HDA+VN LD HH  +DH H      HDH +H HDHD +    +KN
Sbjct: 121 YDDHDHDHDANVNSLDDHHEQYDHDHDHDDDDHDH-NHDHDHDDDDHDNIKN 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7024647.11.2e-3270.55hypothetical protein SDJN02_13465, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591765.11.6e-3269.86hypothetical protein SDJN03_14111, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023536482.11.8e-3170.14histidine-rich glycoprotein-like [Cucurbita pepo subsp. pepo] >XP_023536484.1 hi... [more]
XP_022935989.15.1e-3171.74histidine-rich glycoprotein-like [Cucurbita moschata][more]
XP_038900076.12.8e-2972.86histidine-rich glycoprotein-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1F6Z72.5e-3171.74histidine-rich glycoprotein-like OS=Cucurbita moschata OX=3662 GN=LOC111442725 P... [more]
A0A6J1IKT32.3e-2964.71histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111476525 PE=... [more]
A0A6J1CBC62.2e-2768.31histidine-rich membrane protein KE4 homolog 2-like OS=Momordica charantia OX=367... [more]
A0A6J1J1J41.3e-1150.60histidine-rich glycoprotein-like OS=Cucurbita maxima OX=3661 GN=LOC111480431 PE=... [more]
A0A6J1FL973.0e-0849.42prostatic spermine-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016330.1Tan0016330.1mRNA