Tan0016284 (gene) Snake gourd v1

Overview
NameTan0016284
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionORF43m
LocationLG07: 13813508 .. 13816180 (+)
RNA-Seq ExpressionTan0016284
SyntenyTan0016284
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGTGTAGGTAAATTCAAGGCATCACTCAAAATTTATTCCAATCGAACATTAGAACTCTAACCTAACCCGAGCCTATTTTTCATTACAAATCTCATCTCTTGTATCTGCCTTCTTGTTTGCATTCTCCTCTCCCCACATTTGAATTCATTTATTTTCTTTTGTCTTATCTTATCTTTCTTACTTATCAATTTATTTATTTACAACAATAATTTGCACACTCATGCATTGCACTAAAATAAGGAAATTTTGCTAGGACACTCACTAATTTAGGTCTAACTAGTCCTCGTGGGATCGATACTTTTAACTTATCACTTGCTGCTCTCGACCGTGTATACTTGCACGTCGTAAAAGTGTCGGGGTTTTATTCTAATTTGCATTAGTTTAGGGCACCCGATATTTTCGCATCACCCAGCTCCCTACAAGGTTTCATCCCTGAGAAGGTAGGCATATTGAGTCGGCAACTTTGGCCACTCTCACCCATACTAGTCAAAGGATAAACTCCCGCAGACAGGAGTTCGCAACTCACTCAGGATTTAGGTCGAGTCACTACTGGTCATCTCTTGAATTATTATCCCTAGCCTATCAACGGTGTTACTAGATTGGTCTAACAATTCTTGGTCCAGTCTTATACAAACTCTTTGCACAAGATGCTCCAACTCGCATGTCAACTACATGAACGAGCTGGATCGCCTTGTTTGTATCAAATACAAAGTGGACCACATCCATAGTGTTACCAGGAAAGGTTCCCAACCTCATCCATCTACTATAAACCATTCGGGTCACAAGCTTGAACTTGAGCCTAGATATGTGTCAACTACACATAGTTCAACATTATCTAAATGTGACACTGGAGCTTAGTTTATTGGATTTAAGTTTGTAATTGCGAGAATACGAGATTGAGGGAAAAATAAAAACTTTATTCATTTCCTCAAATAATTACAAATACACGAGTTTAGGGCATAAATCCCAACAATCATACTCTGCACGAGAACTGGAGGGTCTCTTCACTCTTTTGGGTGCCATGTGTGTCACTCAAGAATGTATAGTGCAAAAAGAACTAAAGAGTAACAAACAACACAGTCAGTACAATAAGGGGAAGACAAGCAAAAGGGAAGCATACGAAAACCAAGAGAGGGGTCATGAATAGTCGATCGGGCTCATGAAGGCAACAAGGAAAACAAACGTTTAACACTGTACCAAATAATGATGTAAGGAAAGAAAAATCATGGGTCATATGAACCTCACCACCTAACATTCATGGAAAAGAAGCAAAACAATCTAGCACAAGCAAACCATTCACAAAAAACAATCCAATCCATCACAAGCATGCAAGGGGCAAAAGCAGAGAAGATACAAATCCAATGAGATCCAAGCACAACAGGCACTCACGCTTAAGCAAACAATAGGATATAATCAAAATTTGCAAGGAAAACCCTCCAAAGAACTATCAAAATTTGCAAGAAAAACCCTCCAAAGGACTAAACCAATCATTCTAGTTCAAAATTCAAGCACATACCAAAAACAACCAAAAATGAATGAGTTGTAGTCGATTAGGAGAACAACTATGTCACTACAGAGTTGACTCTTCCTCATGTTTCATTATTCATATTTTATGTCCTGGGACATAGATATTCGAGATATTCATTATGAATCGCCAAAGTTTTCCTATTTCTCCATTGTTCCAATCAGATCCGAAAAATGAGAAAGAAATCAAGACCAGAATTGAATCATGGCTATATAAGCTATTCTGATATTAAGATTCGATATAGATGAAATCGTGGAAGCGGACCTTTGATTTCCTTGGACCATGTAAGAATTCGTTCGACTTATAGAAAAGATCATTAGAGAGGAGACAACTCATTTATGATTCCAGCCGAGAAGACTAGTAAAAGGAAGGATCAAGAATGTCATATATTTCAGGAGCTAGATCAGTTGCCAATAAACAAGTCAGAATTGCCTCAACCAAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTTCATTATCGATTAGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCATATTGCTCATTGGGAATTGAAGAGGGGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGAAAAAGAATAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGAAAGTATCTTGTACCTAAACCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCAAACATGCCATCGAAGACTCTCTACTGAGACAAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCAAGTATGGATCGTACATGGACGGTAGTTGGAGTCGCCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAGCAGCTTGATGCACGAGATCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCTAA

mRNA sequence

ATGCATGTAGTAACAAACAACACAGTCAGTACAATAAGGGGAAGACAAGCAAAAGGGAAGCATACGAAAACCAAGAGAGGGGTCATGAATATCGCCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAGCAGCTTGATGCACGAGATCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCTAA

Coding sequence (CDS)

ATGCATGTAGTAACAAACAACACAGTCAGTACAATAAGGGGAAGACAAGCAAAAGGGAAGCATACGAAAACCAAGAGAGGGGTCATGAATATCGCCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAGCAGCTTGATGCACGAGATCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCTAA

Protein sequence

MHVVTNNTVSTIRGRQAKGKHTKTKRGVMNIAGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSP
Homology
[Close]
BLAST of Tan0016284 vs. NCBI nr
Match: TYK06708.1 (hypothetical protein E5676_scaffold13G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 3.2e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 28 VMNIAGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTT 87
          V+ + GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTT
Sbjct: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66

Query: 88 RSP 91
          RSP
Sbjct: 67 RSP 69

[Close]
BLAST of Tan0016284 vs. NCBI nr
Match: ERM97427.1 (hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda])

HSP 1 Score: 121.7 bits (304), Expect = 3.2e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 28 VMNIAGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTT 87
          V+ + GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTT
Sbjct: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66

Query: 88 RSP 91
          RSP
Sbjct: 67 RSP 69

[Close]
BLAST of Tan0016284 vs. NCBI nr
Match: KAF4348549.1 (hypothetical protein F8388_000228 [Cannabis sativa])

HSP 1 Score: 121.7 bits (304), Expect = 3.2e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 28  VMNIAGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTT 87
           V+ + GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTT
Sbjct: 199 VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 258

Query: 88  RSP 91
           RSP
Sbjct: 259 RSP 261

[Close]
BLAST of Tan0016284 vs. NCBI nr
Match: KAF4361765.1 (hypothetical protein G4B88_012073 [Cannabis sativa] >KAF4394094.1 hypothetical protein F8388_017907 [Cannabis sativa])

HSP 1 Score: 121.7 bits (304), Expect = 3.2e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 28 VMNIAGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTT 87
          V+ + GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTT
Sbjct: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66

Query: 88 RSP 91
          RSP
Sbjct: 67 RSP 69

[Close]
BLAST of Tan0016284 vs. NCBI nr
Match: KAF4360944.1 (hypothetical protein G4B88_015419 [Cannabis sativa])

HSP 1 Score: 121.7 bits (304), Expect = 3.2e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 28 VMNIAGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTT 87
          V+ + GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTT
Sbjct: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66

Query: 88 RSP 91
          RSP
Sbjct: 67 RSP 69

[Close]
BLAST of Tan0016284 vs. ExPASy TrEMBL
Match: A0A6B9QFK3 (ORF43m OS=Nitraria tangutorum OX=357929 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 28 VMNIAGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTT 87
          V+ + GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTT
Sbjct: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66

Query: 88 RSP 91
          RSP
Sbjct: 67 RSP 69

[Close]
BLAST of Tan0016284 vs. ExPASy TrEMBL
Match: A0A6B9QF48 (ORF43m OS=Nitraria roborowskii OX=357932 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 28 VMNIAGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTT 87
          V+ + GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTT
Sbjct: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66

Query: 88 RSP 91
          RSP
Sbjct: 67 RSP 69

[Close]
BLAST of Tan0016284 vs. ExPASy TrEMBL
Match: A0A7J6ETR9 (Citrate synthase OS=Cannabis sativa OX=3483 GN=F8388_017907 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 28 VMNIAGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTT 87
          V+ + GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTT
Sbjct: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66

Query: 88 RSP 91
          RSP
Sbjct: 67 RSP 69

[Close]
BLAST of Tan0016284 vs. ExPASy TrEMBL
Match: A0A6B9QGL2 (ORF43m OS=Nitraria sibirica OX=357931 GN=trnA-UGC PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 28 VMNIAGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTT 87
          V+ + GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTT
Sbjct: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66

Query: 88 RSP 91
          RSP
Sbjct: 67 RSP 69

[Close]
BLAST of Tan0016284 vs. ExPASy TrEMBL
Match: A0A5D3C6C5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00090 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 28 VMNIAGSLRVPSSGIPGEEDQVGPCEQLDARDPFNPLSEMRQKEGKSMDRPHRLHPVGTT 87
          V+ + GSLRVPSSGIPGEEDQVGPCEQLDA  PFNPLSEMRQKEGKSMDRPHRLHPVGTT
Sbjct: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66

Query: 88 RSP 91
          RSP
Sbjct: 67 RSP 69

The following BLAST results are available for this feature:
BLAST of Tan0016284 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0016284 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK06708.13.2e-2490.48hypothetical protein E5676_scaffold13G00090 [Cucumis melo var. makuwa][more]
ERM97427.13.2e-2490.48hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda][more]
KAF4348549.13.2e-2490.48hypothetical protein F8388_000228 [Cannabis sativa][more]
KAF4361765.13.2e-2490.48hypothetical protein G4B88_012073 [Cannabis sativa] >KAF4394094.1 hypothetical p... [more]
KAF4360944.13.2e-2490.48hypothetical protein G4B88_015419 [Cannabis sativa][more]
BLAST of Tan0016284 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6B9QFK31.6e-2490.48ORF43m OS=Nitraria tangutorum OX=357929 GN=trnA-UGC PE=4 SV=1[more]
A0A6B9QF481.6e-2490.48ORF43m OS=Nitraria roborowskii OX=357932 GN=trnA-UGC PE=4 SV=1[more]
A0A7J6ETR91.6e-2490.48Citrate synthase OS=Cannabis sativa OX=3483 GN=F8388_017907 PE=3 SV=1[more]
A0A6B9QGL21.6e-2490.48ORF43m OS=Nitraria sibirica OX=357931 GN=trnA-UGC PE=4 SV=1[more]
A0A5D3C6C51.6e-2490.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Tan0016284 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016284.1Tan0016284.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006101 citrate metabolic process
cellular_component GO:0009507 chloroplast
molecular_function GO:0004108 citrate (Si)-synthase activity