Tan0016267 (gene) Snake gourd v1

Overview


Name	Tan0016267
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG04: 1042184 .. 1042818 (-)
RNA-Seq Expression	Tan0016267
Synteny	Tan0016267

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTGTTGGTCAGGTTAAAGCTTAGCAACGCTCAGCTTCAATTATTTCGTAGTACTACCATATTCGGACCCTATGTCGACTTGGATATAGTTTTTAACAACCCGCTCGTTCACAATATGCTTCTAAGGGATGACGATTTCGATACGGCGATGCGGATCAGTCGACACAAGCAGAAGGTGTGAGTGTCGTCCAGGAAGTCGCCAATGTAATCACAATGACAGACATACACACGACACGAAGTCCTGCAATTCAACCGTTAGATGGTCTCAATCTAGAAATTGAAGTGCCCACTGGAGGTGTTGTTGATGACACCTCCCGTAGGGAGGACGTGCATCCGAATCAACAAAGTTCTGTCCCTCAATGTACTGAAACTCGTGTGCGGTCTCGTGCGTCCAACCGACGTATCCGGACGTCAAGTACTCGTGGTACAGGTCAGTTTATGCAACGGATCGAGCGTCGTCTTGGTATGATTGAAGACAGTGTTAAAAAAGTGAAAGACGACGTTCATGTCTTGCGGGCAAAAATGCAAGATATGAAGGACAAACTTCAAGATGTGCACGACGACATCAGAATTCTTCTTTGTAGATTTAGCCAAAACATTCAGGTACGCAAATGTAGTTTCATGATGTAA

mRNA sequence

ATGAACGTGTTGGTCAGGTTAAAGCTTAGCAACGCTCAGCTTCAATTATTTCGTAGTACTACCATATTCGGACCCTATGTCGACTTGGATATAGTTTTTAACAACCCGCTCGTTCACAATATGCTTCTAAGGGATGACGATTTCGATACGGCGATGCGGATCAGTCGACACAAGCAGAAGGAAGTCGCCAATGTAATCACAATGACAGACATACACACGACACGAAGTCCTGCAATTCAACCGTTAGATGGTCTCAATCTAGAAATTGAAGTGCCCACTGGAGGTGTTGTTGATGACACCTCCCGTAGGGAGGACGTGCATCCGAATCAACAAAGTTCTGTCCCTCAATGTACTGAAACTCGTGTGCGGTCTCGTGCGTCCAACCGACGTATCCGGACGTCAAGTACTCGTGGTACAGGTCAGTTTATGCAACGGATCGAGCGTCGTCTTGGTATGATTGAAGACAGTGTTAAAAAAGTGAAAGACGACGTTCATGTCTTGCGGGCAAAAATGCAAGATATGAAGGACAAACTTCAAGATGTGCACGACGACATCAGAATTCTTCTTTGTAGATTTAGCCAAAACATTCAGGTACGCAAATGTAGTTTCATGATGTAA

Coding sequence (CDS)

ATGAACGTGTTGGTCAGGTTAAAGCTTAGCAACGCTCAGCTTCAATTATTTCGTAGTACTACCATATTCGGACCCTATGTCGACTTGGATATAGTTTTTAACAACCCGCTCGTTCACAATATGCTTCTAAGGGATGACGATTTCGATACGGCGATGCGGATCAGTCGACACAAGCAGAAGGAAGTCGCCAATGTAATCACAATGACAGACATACACACGACACGAAGTCCTGCAATTCAACCGTTAGATGGTCTCAATCTAGAAATTGAAGTGCCCACTGGAGGTGTTGTTGATGACACCTCCCGTAGGGAGGACGTGCATCCGAATCAACAAAGTTCTGTCCCTCAATGTACTGAAACTCGTGTGCGGTCTCGTGCGTCCAACCGACGTATCCGGACGTCAAGTACTCGTGGTACAGGTCAGTTTATGCAACGGATCGAGCGTCGTCTTGGTATGATTGAAGACAGTGTTAAAAAAGTGAAAGACGACGTTCATGTCTTGCGGGCAAAAATGCAAGATATGAAGGACAAACTTCAAGATGTGCACGACGACATCAGAATTCTTCTTTGTAGATTTAGCCAAAACATTCAGGTACGCAAATGTAGTTTCATGATGTAA

Protein sequence

MNVLVRLKLSNAQLQLFRSTTIFGPYVDLDIVFNNPLVHNMLLRDDDFDTAMRISRHKQKEVANVITMTDIHTTRSPAIQPLDGLNLEIEVPTGGVVDDTSRREDVHPNQQSSVPQCTETRVRSRASNRRIRTSSTRGTGQFMQRIERRLGMIEDSVKKVKDDVHVLRAKMQDMKDKLQDVHDDIRILLCRFSQNIQVRKCSFMM

Homology

[Close]

BLAST of Tan0016267 vs. NCBI nr
Match: XP_038896598.1 (uncharacterized protein LOC120084856 [Benincasa hispida])

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-04
Identity = 23/44 (52.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 2  NVLVRLKLSNAQLQLFRSTTIFGPYVDLDIVFNNPLVHNMLLRD 46
          N +V+ KL+  QL++F+  T+FGP++D+++VFNNPL+H+MLLR+
Sbjct: 27 NKIVKQKLTGRQLEMFKK-TVFGPFLDIELVFNNPLIHHMLLRE 69

The following BLAST results are available for this feature:

BLAST of Tan0016267 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016267 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896598.1	2.2e-04	52.27	uncharacterized protein LOC120084856 [Benincasa hispida]	[more]

BLAST of Tan0016267 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Tan0016267 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 143..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016267.1	Tan0016267.1	mRNA