Tan0016251 (gene) Snake gourd v1

Overview
NameTan0016251
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Description28S ribosomal protein S33, mitochondrial
LocationLG05: 82148142 .. 82150720 (+)
RNA-Seq ExpressionTan0016251
SyntenyTan0016251
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAAACCAAACCAAACCAAGCGTAGGGGTTTGCTCGTGGAAAGGGGTTTTAAGAAAAATGACTCTGTAGTTCGCTGGTCTCTAGACGCTCTCAGGCTCTCCACGCCAGACGGCGGCGAATACCCCCTCTCTCTCCGTCAATCGCACTTGCTAATTTCCATTTCCACTTTCAGTCTCTCTCTAATTGGTATGTCGATTTTTTTCCTTTCCTTTGAGCATTTCATTTCGTGTAGTGGCCGTTAGGAAGGTTAATGGTTGAGGGAGGAGGGCTACAGTGAGACTTTAGGAGAAGTTCTTTTTGGTGATTGGAAAACTTAGTAGTTTCTCTAAAACACGTCACTCAGATTATATATTTTGAGTACTTCCGATAAGTTTAATGTCCAACTATGTATTCGACTCTGATTCGTACAACATTTTCTGAAATAGGGTCCGAAAAGTTTAATCTAGCGTATTGGATGATTAGATGGCGAATTTGGGGTTCTAACATTAATGCTCAGCGAAATTCGCTTCTTGACTAAGCTGTGAAGTTACCAAAATTTGTTGAGTGTAACTGTTGACCCCGGATTGTATTAGTTTAGAAGGGTTTATCTTACTCTCATAATCGAGACATGTAAGTTACGTTATTGAGATAATAATCTTGTTGGTTATAATTTCGATGATTGTCTTTAATGAGAACTGATTTATGCGGGTGGGAAAATCAATTTGATTGTTTTGCAACTTCATTTTGATAAAATGAACGCTATGGCTTTGATTTTTGTTCTATTCCCCTAAACTACTGTTGATTATCACTCTGTGGTTATATCAATAGATAAAGGATCCGTTTTGATATGGATGCACTGTCAAGTAGTGTGAAGGGTTTGGCTTATGAACTTTTAAAGTTTTATCGTCGAGTCTGATTTTTCTATGAACCTTCTTTGATTTTGTTTACTTAATAGTTCTTTGGAATTAGGAATCGGGAGCCAATAATTTTTCATATTACTGGACACTTTATACTCCCAAGAAACTATTGACATCGCAAGTGAAACTTGCTATTTAAAAGTTCGACAGAAGGCTCGTTTACATTTTTTATAATCTTTGTCTGATGAGAAGTTTCAGTAGGTTTGGTGTCGGATAGTACTAATTGCGTGTTTGAAAGTTCACTGCTGTCAGGAAATAACACTTCGGTTTCTTTTGTTTAATGCACCCACTTCTTACAAATTCTATACAATCTTCACCGGTTGAAGCTTTTTAATGCTTAAAACATATTCTTGCATTTTTTTTTTTTGGAAATAAAAAACCACCCTTTGAGTGTTTCCCTTGGTGAAGTACATAGGGGTAAACCGGAAGAGAGAATGGCTACTAATAGCCTGAAGAGTATTGTGGCTGCAGCAGTAAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCATGTACTTAACCCAACCGGCCTACGATCTACACACAAGCTTCTGCGCAAAAAACTCATCGGTGACAAAGTAGCTCAGTGGTATCCATACGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAACAAGAGTACTCTCTCTCTCTTTGTGACTATATCATGAGCTAGACATACCATCTGATCAATTGTTTAATGCATAAGAACAAGATTTAGATTTTCTCAATCAATTATTAAGTGATATAGGAGGAGTGTACATAAGGGCTTGCTCACGATTGTTCCTGTATTTTTTTAAATTATAAATTTTTATGCTCTGGAAAACCAAACATTTTCTCTTCTCAATAGACTTTTCTGTTAAAATTTATGAAAAACTAATTTAGCGAGAATAATACTTGCACCTTGCTTAGATTGGAGGGGTTATATTTGTGTATGAGCTAAAGTGCAAGGACATTATTTGCAATTTGCCTAAAAGAATACGAGAAAATCAACAACATTTTAGCGCAGTCGCCTTCATGTTGGAACTTTTGATGTATATACATATTACTTGTGAGGGTTGGAGATTTGAACTTTCAACATTAAGGAGAACGTTGATTTATGCTCATGATGGTGTATTGTTTTCAACTTAAGATATGCATCTCTATGTAATTTGTAAAAGAGAATCAACATGAGAGTGGGGTTCAGTGACCGAGTTTCAAATGTTTCTCGAGAGATGTTACCTGCTCTAATGAGGCAAGGCAACGTCTTATCTGGGGTTTTAGTTGCATATCAATTATCAGAGCTTGTAAACGTTGCAAACTGATGGTTAATTTTATATGTTGTCCTTCAATTACCGTCTATCTCGTAGTTGCAATAGATTTGCCCCACTATTCTAATTATCTCTACCATCTACTTTGCTAGGCGCTTGTCGAAGCTTGAAATGCTGAAGCGGCGCGGTAAAGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGTAATAAGTAGTGACAGTGGAATTGTTCCAGCGAAGGCTTTTATCTTTTTGTTATTTTTTCTTACCTAAGTTTAGGTCATGGACCAGGTTCCTCATAGTTGTAATGACTTCTGTTCATTAAAATTAATATGTACTCTCGAGTATGTTTCGTTCATAATTGAGCTCCATTGAAGCAGATTAATATTTA

mRNA sequence

ATCAAACCAAACCAAACCAAGCGTAGGGGTTTGCTCGTGGAAAGGGGTTTTAAGAAAAATGACTCTGTAGTTCGCTGGTCTCTAGACGCTCTCAGGCTCTCCACGCCAGACGGCGGCGAATACCCCCTCTCTCTCCGTCAATCGCACTTGCTAATTTCCATTTCCACTTTCAGTCTCTCTCTAATTGTACATAGGGGTAAACCGGAAGAGAGAATGGCTACTAATAGCCTGAAGAGTATTGTGGCTGCAGCAGTAAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCATGTACTTAACCCAACCGGCCTACGATCTACACACAAGCTTCTGCGCAAAAAACTCATCGGTGACAAAGTAGCTCAGTGGTATCCATACGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAACAAGAGCGCTTGTCGAAGCTTGAAATGCTGAAGCGGCGCGGTAAAGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGTAATAAGTAGTGACAGTGGAATTGTTCCAGCGAAGGCTTTTATCTTTTTGTTATTTTTTCTTACCTAAGTTTAGGTCATGGACCAGGTTCCTCATAGTTGTAATGACTTCTGTTCATTAAAATTAATATGTACTCTCGAGTATGTTTCGTTCATAATTGAGCTCCATTGAAGCAGATTAATATTTA

Coding sequence (CDS)

ATGGCTACTAATAGCCTGAAGAGTATTGTGGCTGCAGCAGTAAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCATGTACTTAACCCAACCGGCCTACGATCTACACACAAGCTTCTGCGCAAAAAACTCATCGGTGACAAAGTAGCTCAGTGGTATCCATACGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAACAAGAGCGCTTGTCGAAGCTTGAAATGCTGAAGCGGCGCGGTAAAGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGTAATAAGTAG

Protein sequence

MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Homology
[Close]
BLAST of Tan0016251 vs. ExPASy Swiss-Prot
Match: P53305 (Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RSM27 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 0 

Query: 18  VTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLVMA 77
           V E  A+IF    NP+G+R+  K+L ++L G  VA +Y   DI K         D   + 
Sbjct: 11  VAELSAKIFDQNFNPSGIRTGSKILNERLKGPSVASYYGNPDILKFRHLKTLYPDIEFVD 70

Query: 78  RQEQERLSKLEMLKRRGKGPPKKGQGRRAA 99
            +EQ RLS +E  KRRGKG PKK +   AA
Sbjct: 71  LEEQYRLSMVEAKKRRGKGAPKKMKKDAAA 100

[Close]
BLAST of Tan0016251 vs. NCBI nr
Match: XP_023000758.1 (28S ribosomal protein S33, mitochondrial [Cucurbita maxima] >XP_023000759.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima])

HSP 1 Score: 189.1 bits (479), Expect = 1.9e-44
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 0 

Query: 1   MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLK ++AAAVNKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVA+WYPYDIK
Sbjct: 1   MATNSLKGMIAAAVNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of Tan0016251 vs. NCBI nr
Match: XP_022137168.1 (28S ribosomal protein S33, mitochondrial [Momordica charantia] >XP_022137169.1 28S ribosomal protein S33, mitochondrial [Momordica charantia])

HSP 1 Score: 188.3 bits (477), Expect = 3.2e-44
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKSI+A AVN GVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of Tan0016251 vs. NCBI nr
Match: XP_038876969.1 (28S ribosomal protein S33, mitochondrial [Benincasa hispida] >XP_038876970.1 28S ribosomal protein S33, mitochondrial [Benincasa hispida])

HSP 1 Score: 188.3 bits (477), Expect = 3.2e-44
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATN LKS+VAAAVN GVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVAQWYPYDIK
Sbjct: 1   MATNGLKSMVAAAVNMGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of Tan0016251 vs. NCBI nr
Match: KAG7019771.1 (RSM27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.0 bits (476), Expect = 4.1e-44
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 0 

Query: 1   MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLK ++AAA+NKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVA+WYPYDIK
Sbjct: 7   MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIK 66

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 67  KDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 108

[Close]
BLAST of Tan0016251 vs. NCBI nr
Match: XP_004145134.1 (28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus] >XP_031745998.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 4.1e-44
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 0 

Query: 1   MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of Tan0016251 vs. ExPASy TrEMBL
Match: A0A6J1KNI8 (28S ribosomal protein S33, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495113 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.0e-45
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 0 

Query: 1   MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLK ++AAAVNKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVA+WYPYDIK
Sbjct: 1   MATNSLKGMIAAAVNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of Tan0016251 vs. ExPASy TrEMBL
Match: A0A6J1C6H4 (28S ribosomal protein S33, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008711 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKSI+A AVN GVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of Tan0016251 vs. ExPASy TrEMBL
Match: A0A6J1EDC3 (28S ribosomal protein S33, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111431499 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 0 

Query: 1   MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLK ++AAA+NKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVA+WYPYDIK
Sbjct: 1   MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of Tan0016251 vs. ExPASy TrEMBL
Match: A0A0A0LRA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056910 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 0 

Query: 1   MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of Tan0016251 vs. ExPASy TrEMBL
Match: A0A5A7UM66 (28S ribosomal protein S33 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005060 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.4e-44
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 0 

Query: 1   MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MATNSLKS++AAAV+KGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVAQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]
BLAST of Tan0016251 vs. TAIR 10
Match: AT5G44710.1 (CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-40
Identity = 79/102 (77.45%), Postives = 94/102 (92.16%), Query Frame = 0 

Query: 1   MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVAQWYPYDIK 60
           MA+ SLKS++++AV +GVTEARARIFGH+LNPTG RS HK+LRKKLIGDKVA+WYPYDIK
Sbjct: 1   MASGSLKSLISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
            +DP V+AR+E+ER+SKLEMLKRR KGPPKKG G+RAAKRNK
Sbjct: 61  NEDPNVLAREEKERISKLEMLKRRDKGPPKKGHGKRAAKRNK 102

The following BLAST results are available for this feature:
BLAST of Tan0016251 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P533053.0e-0541.11Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC... [more]
BLAST of Tan0016251 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023000758.11.9e-4494.1228S ribosomal protein S33, mitochondrial [Cucurbita maxima] >XP_023000759.1 28S ... [more]
XP_022137168.13.2e-4495.1028S ribosomal protein S33, mitochondrial [Momordica charantia] >XP_022137169.1 2... [more]
XP_038876969.13.2e-4495.1028S ribosomal protein S33, mitochondrial [Benincasa hispida] >XP_038876970.1 28S... [more]
KAG7019771.14.1e-4493.14RSM27, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_004145134.14.1e-4494.1228S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus] >XP_031745... [more]
BLAST of Tan0016251 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KNI89.0e-4594.1228S ribosomal protein S33, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A6J1C6H41.5e-4495.1028S ribosomal protein S33, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1EDC32.0e-4493.1428S ribosomal protein S33, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A0A0LRA72.0e-4494.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056910 PE=3 SV=1[more]
A0A5A7UM663.4e-4494.1228S ribosomal protein S33 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
BLAST of Tan0016251 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G44710.15.1e-4077.45CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:I... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013219Ribosomal protein S27/S33, mitochondrialPFAMPF08293MRP-S33coord: 18..91
e-value: 4.1E-15
score: 55.7
IPR013219Ribosomal protein S27/S33, mitochondrialPANTHERPTHR13362MITOCHONDRIAL RIBOSOMAL PROTEIN S33coord: 1..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..102
NoneNo IPR availablePANTHERPTHR13362:SF4BNAANNG05200D PROTEINcoord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016251.1Tan0016251.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome