Tan0016181 (gene) Snake gourd v1

Overview
NameTan0016181
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionzf-RVT domain-containing protein
LocationLG06: 19877590 .. 19878872 (+)
RNA-Seq ExpressionTan0016181
SyntenyTan0016181
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGGGGAGAGATCTCTTTGTTCCTTGTATCCCCATTTATATCATTTGTCCTCCTTAAAAAATCACTTGGTAGCTTCGATGATCTCTAGTCCTTCCTATTCTAATTTTGTCACTCCATCTCCTTCCCTTGGATTTAGTCGGGCTTTGACCAATAGGGAAACACCCGAAGTTATATCTTTGTTGTCTCTGATCAGTCAGCTTCGACTCTACCATCATCCGAGGGATTCCCGGCTTTGGACTCTCTCTCCTTCTAAAGGTTTTTCGTGTAGCTCCTTCTTTCACTGTTTGGTGAGTCCTGTTGCGTTGAATGATTCTTTTTTCTCCTCTATGTGGAAGGTGAAGGTTCCAAAGAAGGTGAAGTTTTTTGTTTCGCAGGTTTGACATGGAAGGGTGAACACTTTGGATCGTTTGTTGGCTAGGGGGTCTCCTTTGGTTGGGATGTTCTGTTGTATTCTTTGCAGGAGGGCAAACGAGGATCTGGATTACATGCTTTGGAGACGTGACTTTGCTCGAGCTATTTGGAATTGCTTTTTTCAGCAATTCAACTTCTGTTTTGTTGGTCACTTCGATAGTAGAGAGACGTTCATGGAGCTTCTTCTCAATTTGTCTTTCCATGAGAAAGGATTGTTTTCGTGGCAGGGTGAGGTTTGTGCTATTCTATGGTATTTGTGGCTGGAGAGAAACAATAGAATCTTTAGGGGAAAAAAGACTTCTCCTTTGGAAGTGTGGTCCCTAATTAGATTCTATGTTTCTTTTTGGGCTTCGGTGTTAAGGTTCTTTTGTAATTATTCTTTAAGTCTTATTTTGCTTGATTGGAGCCATTTTTTTAGTTGACTCCCCTTTTTTTTGTGGGCTTCTCTTTTTTTTTTTGTACACCCGCGTATTCTTTCATTTTTATCTCAATGAAAGTTCGGTATTTCATGAAAAAAAAAAGCTACAATAAATCTCGAATTAATATCAACTTGGGCCTTAACATCTAAATTCTCAACGACTGATGTCTTCGAAGGTAAAATAAAGTCCTTAGAAATTCCTTCTTCATGCAAGGCCTCATTAATTAATGCCTCTCTCTTGCATATCTTCTAACTCAATATTAACGGTACTAGAATTAATGTTCCGTTGGACATTAAATTCTAATTCCTCAACAATCGTGTGTTTGTGAGCGAAGTCTGAGTGCAGAATTAATTCCTTTCTCATGCATGGGCTTCAATATTAATGCCTCCTTTTCACCCCTGAAACTTCTTTCCCCTTTTAAACCACAGAGCTGTTCACACTTGATTTTCTAC

mRNA sequence

GTGGGGGAGAGATCTCTTTGTTCCTTGTATCCCCATTTATATCATTTGTCCTCCTTAAAAAATCACTTGGTAGCTTCGATGATCTCTAGTCCTTCCTATTCTAATTTTGTCACTCCATCTCCTTCCCTTGGATTTAGTCGGGCTTTGACCAATAGGGAAACACCCGAAGTTATATCTTTGTTGTCTCTGATCAGTCAGCTTCGACTCTACCATCATCCGAGGGATTCCCGGCTTTGGACTCTCTCTCCTTCTAAAGGTTTTTCGTGTAGCTCCTTCTTTCACTGTTTGGTGAGTCCTGTTGCGTTGAATGATTCTTTTTTCTCCTCTATGTGGAAGGTGAAGGTTCCAAAGAAGGTGAAGTTTTTTGTTTCGCAGGTTTGACATGGAAGGGTGAACACTTTGGATCGTTTGTTGGCTAGGGGGTCTCCTTTGGTTGGGATGTTCTGTTGTATTCTTTGCAGGAGGGCAAACGAGGATCTGGATTACATGCTTTGGAGACGTGACTTTGCTCGAGCTATTTGGAATTGCTTTTTTCAGCAATTCAACTTCTGTTTTGTTGGTCACTTCGATAGTAGAGAGACGTTCATGGAGCTTCTTCTCAATTTGTCTTTCCATGAGAAAGGATTGTTTTCGTGGCAGGGTGAGGTTTGTGCTATTCTATGGTATTTGTGGCTGGAGAGAAACAATAGAATCTTTAGGGGAAAAAAGACTTCTCCTTTGGAAGTGTGGTCCCTAATTAGATTCTATGTTTCTTTTTGGGCTTCGGTGTTAAGGTTCTTTTGTAATTATTCTTTAAGTCTTATTTTGCTTGATTGGAGCCATTTTTTTAGTTGACTCCCCTTTTTTTTGTGGGCTTCTCTTTTTTTTTTTGTACACCCGCGTATTCTTTCATTTTTATCTCAATGAAAGTTCGGTATTTCATGAAAAAAAAAAGCTACAATAAATCTCGAATTAATATCAACTTGGGCCTTAACATCTAAATTCTCAACGACTGATGTCTTCGAAGGTAAAATAAAGTCCTTAGAAATTCCTTCTTCATGCAAGGCCTCATTAATTAATGCCTCTCTCTTGCATATCTTCTAACTCAATATTAACGGTACTAGAATTAATGTTCCGTTGGACATTAAATTCTAATTCCTCAACAATCGTGTGTTTGTGAGCGAAGTCTGAGTGCAGAATTAATTCCTTTCTCATGCATGGGCTTCAATATTAATGCCTCCTTTTCACCCCTGAAACTTCTTTCCCCTTTTAAACCACAGAGCTGTTCACACTTGATTTTCTAC

Coding sequence (CDS)

ATGTTCTGTTGTATTCTTTGCAGGAGGGCAAACGAGGATCTGGATTACATGCTTTGGAGACGTGACTTTGCTCGAGCTATTTGGAATTGCTTTTTTCAGCAATTCAACTTCTGTTTTGTTGGTCACTTCGATAGTAGAGAGACGTTCATGGAGCTTCTTCTCAATTTGTCTTTCCATGAGAAAGGATTGTTTTCGTGGCAGGGTGAGGTTTGTGCTATTCTATGGTATTTGTGGCTGGAGAGAAACAATAGAATCTTTAGGGGAAAAAAGACTTCTCCTTTGGAAGTGTGGTCCCTAATTAGATTCTATGTTTCTTTTTGGGCTTCGGTGTTAAGGTTCTTTTGTAATTATTCTTTAAGTCTTATTTTGCTTGATTGGAGCCATTTTTTTAGTTGA

Protein sequence

MFCCILCRRANEDLDYMLWRRDFARAIWNCFFQQFNFCFVGHFDSRETFMELLLNLSFHEKGLFSWQGEVCAILWYLWLERNNRIFRGKKTSPLEVWSLIRFYVSFWASVLRFFCNYSLSLILLDWSHFFS
Homology
BLAST of Tan0016181 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-21
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 0

Query: 12  EDLDYMLWRRDFARAIWNCFFQQFNFCFVGHFDSRETFMELLLNLSFHEKGLFSWQGEVC 71
           EDLD++L     A  IW+ F Q F   +  H D R    E LLNL   E+G F W+  VC
Sbjct: 54  EDLDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACVC 113

Query: 72  AILWYLWLERNNRIFRGKKTSPLEVWSLIRFYVSFWASVLRFFCNYSLSLILLDWSHF 130
           AILW LW E N R+F G +    E+W +IR++VS W S+ + FCNY L +IL  W+ F
Sbjct: 114 AILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTFCNYPLDMILYSWATF 171

BLAST of Tan0016181 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 4.0e-15
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 0

Query: 34  QFNFCFVGHFDSRETFMELLLNLSFHEKGLFSWQGEVCAILWYLWLERNNRIFRGKKTSP 93
           +F+    G  D R      +L+  F EKG F W  EVCAI+W +W ERN+R+FRGK    
Sbjct: 299 EFDVSIAGQRDVRAMTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDL 358

Query: 94  LEVWSLIRFYVSFWASVLRFFCNYSLSLILLDWSHFF 131
            E+ SL+RF+VS W SV + FCNYSL  I L    FF
Sbjct: 359 SEIGSLVRFHVSLWTSVSKLFCNYSLGNINLSLIPFF 395

BLAST of Tan0016181 vs. NCBI nr
Match: RVW41830.1 (hypothetical protein CK203_108403 [Vitis vinifera])

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-11
Identity = 39/123 (31.71%), Postives = 57/123 (46.34%), Query Frame = 0

Query: 4   CILCRRANEDLDYMLWRRDFARAIWNCFFQQFNFCFVGHFDSRETFMELLLNLSFHEKGL 63
           CILC+R  E +D++         +W+  F      +V      +  +     L    +G 
Sbjct: 183 CILCKRNGESIDHLFLHCPVTIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGNSVRGK 242

Query: 64  FSWQGEVCAILWYLWLERNNRIFRGKKTSPLEVWSLIRFYVSFWASVLRFFCNYSLSLIL 123
             WQ     ++W +W ERNNRIF  K  +   VW LIRFY S WAS    F    LS++ 
Sbjct: 243 ILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSILQ 302

Query: 124 LDW 127
           ++W
Sbjct: 303 INW 305

BLAST of Tan0016181 vs. NCBI nr
Match: XP_040371876.1 (uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371877.1 uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371878.1 uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371879.1 uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371880.1 uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371881.1 uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis])

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-11
Identity = 41/124 (33.06%), Postives = 60/124 (48.39%), Query Frame = 0

Query: 4   CILCRRANEDLDYMLWRRDFARAIWNCFFQQFNFCFVGHFDSRETFMELLLNLSFHEKGL 63
           CILCR   E  D++    D   ++W   F++    +       E   E  L     +K  
Sbjct: 349 CILCRNHGESADHVFVHCDVTISLWKKLFREARVDWTNPLQRSELLREKPLAFGKGKKAK 408

Query: 64  FSWQGEVCAILWYLWLERNNRIFRGKKTSPLE-VWSLIRFYVSFWASVLRFFCNYSLSLI 123
             W   V A+ W +WLERN RIF     S  E +W  ++F+ S W S+ + F +YSLS I
Sbjct: 409 TLWGCGVLAVCWVVWLERNRRIFENYGGSEREDMWERVKFWASLWVSISKEFKDYSLSSI 468

Query: 124 LLDW 127
           +L+W
Sbjct: 469 ILNW 472

BLAST of Tan0016181 vs. NCBI nr
Match: XP_040371882.1 (uncharacterized protein LOC112192237 isoform X2 [Rosa chinensis])

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-11
Identity = 41/124 (33.06%), Postives = 60/124 (48.39%), Query Frame = 0

Query: 4   CILCRRANEDLDYMLWRRDFARAIWNCFFQQFNFCFVGHFDSRETFMELLLNLSFHEKGL 63
           CILCR   E  D++    D   ++W   F++    +       E   E  L     +K  
Sbjct: 317 CILCRNHGESADHVFVHCDVTISLWKKLFREARVDWTNPLQRSELLREKPLAFGKGKKAK 376

Query: 64  FSWQGEVCAILWYLWLERNNRIFRGKKTSPLE-VWSLIRFYVSFWASVLRFFCNYSLSLI 123
             W   V A+ W +WLERN RIF     S  E +W  ++F+ S W S+ + F +YSLS I
Sbjct: 377 TLWGCGVLAVCWVVWLERNRRIFENYGGSEREDMWERVKFWASLWVSISKEFKDYSLSSI 436

Query: 124 LLDW 127
           +L+W
Sbjct: 437 ILNW 440

BLAST of Tan0016181 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.1e-22
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 0

Query: 12  EDLDYMLWRRDFARAIWNCFFQQFNFCFVGHFDSRETFMELLLNLSFHEKGLFSWQGEVC 71
           EDLD++L     A  IW+ F Q F   +  H D R    E LLNL   E+G F W+  VC
Sbjct: 54  EDLDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACVC 113

Query: 72  AILWYLWLERNNRIFRGKKTSPLEVWSLIRFYVSFWASVLRFFCNYSLSLILLDWSHF 130
           AILW LW E N R+F G +    E+W +IR++VS W S+ + FCNY L +IL  W+ F
Sbjct: 114 AILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTFCNYPLDMILYSWATF 171

BLAST of Tan0016181 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 0

Query: 34  QFNFCFVGHFDSRETFMELLLNLSFHEKGLFSWQGEVCAILWYLWLERNNRIFRGKKTSP 93
           +F+    G  D R      +L+  F EKG F W  EVCAI+W +W ERN+R+FRGK    
Sbjct: 299 EFDVSIAGQRDVRAMTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKDRDL 358

Query: 94  LEVWSLIRFYVSFWASVLRFFCNYSLSLILLDWSHFF 131
            E+ SL+RF+VS W SV + FCNYSL  I L    FF
Sbjct: 359 SEIGSLVRFHVSLWTSVSKLFCNYSLGNINLSLIPFF 395

BLAST of Tan0016181 vs. ExPASy TrEMBL
Match: A0A438E2J1 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_108403 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.8e-11
Identity = 39/123 (31.71%), Postives = 57/123 (46.34%), Query Frame = 0

Query: 4   CILCRRANEDLDYMLWRRDFARAIWNCFFQQFNFCFVGHFDSRETFMELLLNLSFHEKGL 63
           CILC+R  E +D++         +W+  F      +V      +  +     L    +G 
Sbjct: 183 CILCKRNGESIDHLFLHCPVTIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGNSVRGK 242

Query: 64  FSWQGEVCAILWYLWLERNNRIFRGKKTSPLEVWSLIRFYVSFWASVLRFFCNYSLSLIL 123
             WQ     ++W +W ERNNRIF  K  +   VW LIRFY S WAS    F    LS++ 
Sbjct: 243 ILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSILQ 302

Query: 124 LDW 127
           ++W
Sbjct: 303 INW 305

BLAST of Tan0016181 vs. ExPASy TrEMBL
Match: A0A438FM03 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_354 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.8e-11
Identity = 39/123 (31.71%), Postives = 57/123 (46.34%), Query Frame = 0

Query: 4   CILCRRANEDLDYMLWRRDFARAIWNCFFQQFNFCFVGHFDSRETFMELLLNLSFHEKGL 63
           CILC+R  E +D++         +W+  F      +V      +  +     L    +G 
Sbjct: 92  CILCKRNGESIDHLFLHCPVTIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGNSVRGK 151

Query: 64  FSWQGEVCAILWYLWLERNNRIFRGKKTSPLEVWSLIRFYVSFWASVLRFFCNYSLSLIL 123
             WQ     ++W +W ERNNRIF  K  +   VW LIRFY S WAS    F    LS++ 
Sbjct: 152 ILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSILQ 211

Query: 124 LDW 127
           ++W
Sbjct: 212 INW 214

BLAST of Tan0016181 vs. ExPASy TrEMBL
Match: A0A438KG54 (Protein RETICULATA, chloroplastic OS=Vitis vinifera OX=29760 GN=RE_0 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-10
Identity = 38/123 (30.89%), Postives = 56/123 (45.53%), Query Frame = 0

Query: 4   CILCRRANEDLDYMLWRRDFARAIWNCFFQQFNFCFVGHFDSRETFMELLLNLSFHEKGL 63
           CILC+   E +D++         +W+  F      +V      +  +     L    +G 
Sbjct: 468 CILCKGNGESIDHLFLHCPVTNGLWHRLFNLVGVSWVPPRSIEDMLVISFKGLGNSVRGK 527

Query: 64  FSWQGEVCAILWYLWLERNNRIFRGKKTSPLEVWSLIRFYVSFWASVLRFFCNYSLSLIL 123
             WQ     ++W +W ERNNRIF  K  +   VW LIRFY S WAS    F    LS++ 
Sbjct: 528 ILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSILQ 587

Query: 124 LDW 127
           ++W
Sbjct: 588 INW 590

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_016900613.11.7e-2144.92PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo][more]
TYK19563.14.0e-1547.42uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa][more]
RVW41830.17.8e-1131.71hypothetical protein CK203_108403 [Vitis vinifera][more]
XP_040371876.17.8e-1133.06uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis] >XP_040371877.1... [more]
XP_040371882.17.8e-1133.06uncharacterized protein LOC112192237 isoform X2 [Rosa chinensis][more]
Match NameE-valueIdentityDescription
A0A1S4DXB18.1e-2244.92uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=... [more]
A0A5D3D7T21.9e-1547.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A438E2J13.8e-1131.71zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_108403 PE=4... [more]
A0A438FM033.8e-1131.71Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_354 P... [more]
A0A438KG541.1e-1030.89Protein RETICULATA, chloroplastic OS=Vitis vinifera OX=29760 GN=RE_0 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016181.1Tan0016181.1mRNA