Tan0016175 (gene) Snake gourd v1

Overview
NameTan0016175
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionZinc ion binding / nucleic acid binding protein
LocationContig00127: 145047 .. 146145 (-)
RNA-Seq ExpressionTan0016175
SyntenyTan0016175
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTGACAAACTTTCTGTCTAACTGTCGAGATCTCTTGCTCGGTGTGCTCGTTACTCGTTTAGCTCGGCAAGCAAGTAAGTAATTTTTCCTCAGCGTTTCGTTTCTAAGCTAGGTGACCTGAGCTTGGGGATTTTGTTTAGTTAGTAAGGGAGTAGGCAGGGGGGGAGTCAAAGGGTGGGAATAGATTGTAGTGAATTGTGGGAGTTTCTAAGGAAAGCTATCTTCTCAAAGTCAAATCTTCAAAAGGATGGAGTTCCAGCAAAACCCTTTCTAAGGATGAGGACGGTAGTTCGGGAGTTCGCTCGAAAGAACTGGCGTACCAAGGGGGATCTTTCGATCACTCTGTTAGATCCAAGGCACGTCTTCATCAAGCTCTCGAACAAAGAAGATATGCACCAAAAAGAGAAGTTTTTGATTGAGGGATTGATGTTTAGGGTTTTCTGCTGGAGCCATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGGTATCGCGACCCCATCTGCCTATTGTCTTCTTCTTTGAGTTTCGCCTGTTTTCTATCGTCTCGACTTTCGGAATTGGCCTGACCCTTGAAGGTCCTACGAAGCTTGTCTCACGCCCCCCTCTCACAATAAAGCTAGGGTTTGTGTAGAAATCGGTCTTCTCAAGGAAAACCTCCCAAATCGTGTTTTGATTGGATCGACTGTGTATGTATGGATCACTAGCAAGAAATCGTTTCTTTTTGAATACCTAAGTTCTGCACGCATTGCAGACGACAAGGTCATGCCCGTCACGAATGCAAAGTGGCGAATAAGGAACCAGGTGTCAACCCGTCACCGAGAATGGCCTATGTTCCAAGAACCAATGCTACCCAGCACCTACCACTGAAGTTAGCCTTCGTGATTCAGATGTTGCTGCTGCTGACATGCAAACCATTGAAGATGGTCCTCGGGGCGAAGAGCTTGAACCAGATAACAATCCCCAAGCTTCTGTTCTTCAACAACCGGAGTATTTAGCTATTGGAAAATCGCCTTCGGTTAACGCAGCCCCTAATACCGGCGGTAGCTCTGCCTCATGGGGACAGCAGGAAGAGGAAAGAGTTTGA

mRNA sequence

CCCTGACAAACTTTCTGTCTAACTGTCGAGATCTCTTGCTCGGTGTGCTCGTTACTCGTTTAGCTCGGCAAGCAAGTAAGTAATTTTTCCTCAGCGTTTCGTTTCTAAGCTAGGTGACCTGAGCTTGGGGATTTTGTTTAGTTAGTAAGGGAGTAGGCAGGGGGGGAGTCAAAGGGTGGGAATAGATTGTAGTGAATTGTGGGAGTTTCTAAGGAAAGCTATCTTCTCAAAGTCAAATCTTCAAAAGGATGGAGTTCCAGCAAAACCCTTTCTAAGGATGAGGACGGTAGTTCGGGAGTTCGCTCGAAAGAACTGGCGTACCAAGGGGGATCTTTCGATCACTCTGTTAGATCCAAGGCACGTCTTCATCAAGCTCTCGAACAAAGAAGATATGCACCAAAAAGAGAAGTTTTTGATTGAGGGATTGATGTTTAGGGTTTTCTGCTGGAGCCATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGGTATCGCGACCCCATCTGCCTATTGTCTTCTTCTTTGAGTTTCGCCTGTTTTCTATCGTCTCGACTTTCGGAATTGGCCTGACCCTTGAAGGTCCTACGAAGCTTGTCTCACGCCCCCCTCTCACAATAAAGCTAGGGTGTCAACCCGTCACCGAGAATGGCCTATGTTCCAAGAACCAATGCTACCCAGCACCTACCACTGAAGTTAGCCTTCGTGATTCAGATGTTGCTGCTGCTGACATGCAAACCATTGAAGATGGTCCTCGGGGCGAAGAGCTTGAACCAGATAACAATCCCCAAGCTTCTGTTCTTCAACAACCGGAGTATTTAGCTATTGGAAAATCGCCTTCGGTTAACGCAGCCCCTAATACCGGCGGTAGCTCTGCCTCATGGGGACAGCAGGAAGAGGAAAGAGTTTGA

Coding sequence (CDS)

ATGAGGACGGTAGTTCGGGAGTTCGCTCGAAAGAACTGGCGTACCAAGGGGGATCTTTCGATCACTCTGTTAGATCCAAGGCACGTCTTCATCAAGCTCTCGAACAAAGAAGATATGCACCAAAAAGAGAAGTTTTTGATTGAGGGATTGATGTTTAGGGTTTTCTGCTGGAGCCATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGGTATCGCGACCCCATCTGCCTATTGTCTTCTTCTTTGAGTTTCGCCTGTTTTCTATCGTCTCGACTTTCGGAATTGGCCTGACCCTTGAAGGTCCTACGAAGCTTGTCTCACGCCCCCCTCTCACAATAAAGCTAGGGTGTCAACCCGTCACCGAGAATGGCCTATGTTCCAAGAACCAATGCTACCCAGCACCTACCACTGAAGTTAGCCTTCGTGATTCAGATGTTGCTGCTGCTGACATGCAAACCATTGAAGATGGTCCTCGGGGCGAAGAGCTTGAACCAGATAACAATCCCCAAGCTTCTGTTCTTCAACAACCGGAGTATTTAGCTATTGGAAAATCGCCTTCGGTTAACGCAGCCCCTAATACCGGCGGTAGCTCTGCCTCATGGGGACAGCAGGAAGAGGAAAGAGTTTGA

Protein sequence

MRTVVREFARKNWRTKGDLSITLLDPRHVFIKLSNKEDMHQKEKFLIEGLMFRVFCWSHDFRLRNGDPMHAPIWVSRPHLPIVFFFEFRLFSIVSTFGIGLTLEGPTKLVSRPPLTIKLGCQPVTENGLCSKNQCYPAPTTEVSLRDSDVAAADMQTIEDGPRGEELEPDNNPQASVLQQPEYLAIGKSPSVNAAPNTGGSSASWGQQEEERV
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYK04334.19.0e-4154.25hypothetical protein E5676_scaffold84043G00010 [Cucumis melo var. makuwa][more]
KAA0059498.19.0e-4154.25hypothetical protein E6C27_scaffold48829G00010 [Cucumis melo var. makuwa][more]
VVA33529.12.9e-3193.15PREDICTED: IST1 [Prunus dulcis][more]
WP_131796640.13.2e-3095.59DUF4283 domain-containing protein [Candidatus Frankia datiscae][more]
EEF27683.11.3e-1876.32conserved hypothetical protein [Ricinus communis][more]
Match NameE-valueIdentityDescription
A0A5A7UWF64.3e-4154.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BZC34.3e-4154.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5E4G1B81.4e-3193.15PREDICTED: IST1 OS=Prunus dulcis OX=3755 GN=ALMOND_2B000361 PE=3 SV=1[more]
B9T8X86.1e-1976.32Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1985520 PE=4 SV=1[more]
A0A6P6VHH03.0e-1039.60uncharacterized protein LOC113721847 OS=Coffea arabica OX=13443 GN=LOC113721847 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 5..112
e-value: 3.6E-13
score: 49.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..207

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0016175.1Tan0016175.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport