Tan0016060 (gene) Snake gourd v1

Overview


Name	Tan0016060
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty1-copia retrotransposon protein
Location	LG05: 15831564 .. 15831875 (-)
RNA-Seq Expression	Tan0016060
Synteny	Tan0016060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCAAATTCGGGAAGGTTCTTCCAGATCTGTCGAAATTAGAGCCACTCGATGGAGCAAATTACCGTAATTGGTCCAAGAAGTTGTTGATCTTCTTCGAGCAATTGGAGGTTGACTATGTCTTTACAACAGAATGTTTGGATCGATCCAAGCTTACTGTCGTCACTAATCCAGGCGCATCAACCGATGTAGAATTTGTCTCTGCTCAATCCAAACCAACCTCCGATACTGATCCTGAAAAATTTGAGAAAGATAACATGACAGTTCGGGGCCATCTACTTAACCACATGACAGATTCCCCTGTTTGA

mRNA sequence

ATGTCGATCAAATTCGGGAAGGTTCTTCCAGATCTGTCGAAATTAGAGCCACTCGATGGAGCAAATTACCGTAATTGGTCCAAGAAGTTGTTGATCTTCTTCGAGCAATTGGAGGTTGACTATGTCTTTACAACAGAATGTTTGGATCGATCCAAGCTTACTGTCGTCACTAATCCAGGCGCATCAACCGATGTAGAATTTGTCTCTGCTCAATCCAAACCAACCTCCGATACTGATCCTGAAAAATTTGAGAAAGATAACATGACAGTTCGGGGCCATCTACTTAACCACATGACAGATTCCCCTGTTTGA

Coding sequence (CDS)

ATGTCGATCAAATTCGGGAAGGTTCTTCCAGATCTGTCGAAATTAGAGCCACTCGATGGAGCAAATTACCGTAATTGGTCCAAGAAGTTGTTGATCTTCTTCGAGCAATTGGAGGTTGACTATGTCTTTACAACAGAATGTTTGGATCGATCCAAGCTTACTGTCGTCACTAATCCAGGCGCATCAACCGATGTAGAATTTGTCTCTGCTCAATCCAAACCAACCTCCGATACTGATCCTGAAAAATTTGAGAAAGATAACATGACAGTTCGGGGCCATCTACTTAACCACATGACAGATTCCCCTGTTTGA

Protein sequence

MSIKFGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVVTNPGASTDVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTDSPV

Homology

[Close]

BLAST of Tan0016060 vs. NCBI nr
Match: XP_008456453.1 (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 64/107 (59.81%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV--- 60
           MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60

Query: 61  TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTD 101
           +NP +ST       V+ Q K     DPEK+ KDN TVRGHLLNHM+D
Sbjct: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSD 107

[Close]

BLAST of Tan0016060 vs. NCBI nr
Match: KAA0054462.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 64/107 (59.81%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV--- 60
           MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60

Query: 61  TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTD 101
           +NP +ST       V+ Q K     DPEK+ KDN TVRGHLLNHM+D
Sbjct: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSD 107

[Close]

BLAST of Tan0016060 vs. NCBI nr
Match: KAA0041580.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19676.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-21
Identity = 63/107 (58.88%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV--- 60
           MSIK   K+LPDLSKLEPLDG NYR+WS+KLLIFFEQLEVDYV TT+       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRHWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTY 60

Query: 61  TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTD 101
           +NP +ST       V+ Q K     DPEK+ KDN TVRGHLLNHM++
Sbjct: 61  SNPESSTGSPTTVAVADQVKKDQVIDPEKYAKDNKTVRGHLLNHMSE 107

[Close]

BLAST of Tan0016060 vs. NCBI nr
Match: KAA0044943.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.8e-21
Identity = 63/107 (58.88%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV--- 60
           MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPQTTTSTS 60

Query: 61  TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTD 101
           ++P +ST       V+ Q K     DPEK+ KDN TVRGHLLNHM+D
Sbjct: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSD 107

[Close]

BLAST of Tan0016060 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 6.5e-21
Identity = 63/107 (58.88%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV--- 60
           MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTD 101
           ++P +ST       V+ Q K     DPEK+ KDN TVRGHLLNHM+D
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSD 107

[Close]

BLAST of Tan0016060 vs. ExPASy TrEMBL
Match: A0A5A7UFB4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002340 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.3e-22
Identity = 64/107 (59.81%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV--- 60
           MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60

Query: 61  TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTD 101
           +NP +ST       V+ Q K     DPEK+ KDN TVRGHLLNHM+D
Sbjct: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSD 107

[Close]

BLAST of Tan0016060 vs. ExPASy TrEMBL
Match: A0A1S3C3Z1 (uncharacterized protein LOC103496396 OS=Cucumis melo OX=3656 GN=LOC103496396 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.3e-22
Identity = 64/107 (59.81%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV--- 60
           MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60

Query: 61  TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTD 101
           +NP +ST       V+ Q K     DPEK+ KDN TVRGHLLNHM+D
Sbjct: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSD 107

[Close]

BLAST of Tan0016060 vs. ExPASy TrEMBL
Match: A0A5D3D7X7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00700 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 63/107 (58.88%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 1   MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV--- 60
           MSIK   K+LPDLSKLEPLDG NYR+WS+KLLIFFEQLEVDYV TT+       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRHWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTY 60

Query: 61  TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTD 101
           +NP +ST       V+ Q K     DPEK+ KDN TVRGHLLNHM++
Sbjct: 61  SNPESSTGSPTTVAVADQVKKDQVIDPEKYAKDNKTVRGHLLNHMSE 107

[Close]

BLAST of Tan0016060 vs. ExPASy TrEMBL
Match: A0A5A7TN53 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002440 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 63/107 (58.88%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV--- 60
           MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPQTTTSTS 60

Query: 61  TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTD 101
           ++P +ST       V+ Q K     DPEK+ KDN TVRGHLLNHM+D
Sbjct: 61  SDPESSTGPLTAVAVTEQVKKDQVIDPEKYAKDNKTVRGHLLNHMSD 107

[Close]

BLAST of Tan0016060 vs. ExPASy TrEMBL
Match: A0A5A7SKK3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004780 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.1e-21
Identity = 63/107 (58.88%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MSIK-FGKVLPDLSKLEPLDGANYRNWSKKLLIFFEQLEVDYVFTTECLDRSKLTVV--- 60
           MSIK   K+LPDLSKLEPLDG NYR WS+KLLIFFEQLEVDYV TT+       T     
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  TNPGAST---DVEFVSAQSKPTSDTDPEKFEKDNMTVRGHLLNHMTD 101
           ++P +ST       V+ Q K     DPEK+ KDN TVRGHLLNHM+D
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSD 107

The following BLAST results are available for this feature:

BLAST of Tan0016060 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456453.1	1.3e-21	59.81	PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]	[more]
KAA0054462.1	1.3e-21	59.81	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041580.1	2.9e-21	58.88	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19676.1 ty1-cop...	[more]
KAA0044943.1	3.8e-21	58.88	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	6.5e-21	58.88	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0016060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFB4	6.3e-22	59.81	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3C3Z1	6.3e-22	59.81	uncharacterized protein LOC103496396 OS=Cucumis melo OX=3656 GN=LOC103496396 PE=...	[more]
A0A5D3D7X7	1.4e-21	58.88	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TN53	1.8e-21	58.88	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SKK3	3.1e-21	58.88	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Tan0016060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016060.1	Tan0016060.1	mRNA