Tan0016046 (gene) Snake gourd v1

Overview


Name	Tan0016046
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	30S ribosomal protein S21, chloroplastic
Location	LG07: 3382185 .. 3385869 (+)
RNA-Seq Expression	Tan0016046
Synteny	Tan0016046

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAACAGCTAAGAAACCATTGGATTGGGAAACTTATCCACAAACAAGAGAGAGAAGGGCTGATCCCATCAATGGATGTCTCCAATTTGCAAACTTCACACTGATAAACAAATTTTGGGTCTTAGAAGAAGAAAGAAAAATTCCATTAAAAGTTCAAAACAGTGAGCAGATAAGACTGAATTCCTCCATTCTCAACCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGTCCCCAAAGCCCCAACAGCCCTTCATTGCCTCTCCTTCTCCGGCGACTCAGGCCGCCGCTCAGTTTCAAACGCTCAAATCCAGAGATGGATCGGTTGCGCTAAAACCCCTTGAGGGTTCGAACCATTCCGAGCCCTTATCGGCGGAATTGGCCTCCGTGATCTGTCCCTCGCTGGCCTTCGCCAACACCATGTTCTTCAGTTCGGCGTATAATGTGCAGGTGATTGTGGATGATAATGAGCCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGTGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAATACTCAGGATGTCAGAAAGCGTAAGTCTCGCGAGGCTGCTAAACGCAACCGCCGGAGGTCTGTTTCTGAAATTTCTTGTGGTTTCTTTTGGGATTTTTGGTTCTTGGTTTCTCAAACTCTGTGATTGTTTTTGATTGATTATGGTTCTTTTGATTGGAGCCATTTGGGATTTGGGATTTGTGCTCTAGTGTTGAATTGGATAGCTATCACTATTGGTTCGAGAATATGAAGGGTTTGTAGAGATTTATGTAGGCACTTAAACTATAATAAAGTACGTGTTCTAAACACGGTGGCCACCTACTTAGAATTTAATATCTTACGAGTTACCTTGACAAGAAAATGCGGTAGAGTCATACGGTTATCGTGAGAATGTGCGAGCCGGTTCGAACATTAAGAAGAAAAAAGTTAGACTATAATAATGTAGAATAAAAGAGAAATTAGGCACACTTCCTTGATATGTTTTTACCTCTACTCTTTTGAGCAACTTAGGATATGCCGAGAAAGTAGTGAGAGGAGAAATTGTACATAAGGGGACTTGAGAGAGAATGGAGAAATCTCTCCTGAGTGTCAAGAGTAAACCATGTTTTCGAAAAAGTGTGGATTCACTTGTTTTCATCTCGAATGTTGATCTCGAATGTTGATGGTTTGATTTTCCACCTGCACAATTGTTCAACTAAAGAAACGGTACGCTCTATGTGGTTTCAATTCTTCTTCTACTTGTTGTAATCCTCCATCATTATAGTGGAACTTGTAGAATTTATAGACGATAAAGCATAGCCACGGTTAAAAAGTATAAATTGTTGCAACTTTTGTTCCTTTTTACTCTTCTTCTTTCGTTTTGTTATTATTGTTTATTGTGTTTGTAAAATAGAGATTTTTTTTTTTTATGGGAAACATATTACATTTCATTGATCATATGAAATTGGTACAAAAAGCCTATCAAGGATAATAACAAAAAGAGGTCCAGTGAGTTAGTAGTGTAGATAGACTATAATTACAAAAGGGGGGAGACAAAATACTCAAAGACATAGCAAGATAGGTCGTATTTTCTATGAACACATGAAAGTTCTTGGTCTTTTCTTTGAAAATCCGGGCATTGCGCTCAAGCCATAGGTTCCATAAAAATGCGTAGACAAAGTTGAGCCACAAAATTTTCTTCTCCTTCTTGAAAGGATGACCCCACAAAGCCACATTCAAAAGAGTGTAGATATCGCCCGGCATGGTGAAAATCCAACCAAATGATTGCATTAAGTAAGACCATCCCAAATAGACAAAAGCACAAGTATTGAACAAGTGTAAAAGGGTTTCACTATCAGCTTGGCACATGATACAGCAGCTGGGAGAGATAGATAACCAAGGGGATCTTTTTTGCAGGTTGTCATAGGTGTTGATACAAGAGTGACTGAGTTCCCAAATGAAAATTTTGAATTTTTTGGGAGCGGAACCTGACCATAACTGATTGTAGAAAGTAGATTTTGTTGAACATCCCGAAGAAACTAGCTTTCTGGTTAAAGAATTGGAGGTGAACATGCCTTCTTTTTCTAGGTTCCACAACCATTTATCCTCTTGATATTTAGGGAAAAAGGTTGTTAACTTATGGGAGAAGGATGTCCATTCTTCAATTTCTGTCTCAGTCAGATTCCGGCGCAAATAAAGGTTCCAAGAGCTAGCTTCTGTGTTCCAGAGGTCTGCAATTGTGGCACCCTTTTTTGTGGACAGACTGTATAAAGATGGGAAACAAAGATGAAGAGGATGCTCACCCGACCAAGTGTCTGCCCAAAAGAAAGTACCATCACTCTTACCAACGTTAACTTTGATGTGTTTCTTCTTCCTTCTTTCATCGTTCTCATTCGGTTTCTTACCAAAAAAGAATATAGAATTTCAGATCTTGCAGAACCTTCAAATTCATCACATCTTTATCTTGAAACCAAAAAATCATTATGGGAGTTCTATTCAAGTAGGAAGATGGCTGTAGAAATGGCTTAGCAGAGATCTTAATGCCCAATTAAGTGGATTCTTGAGGCTCATTAGCTAAAAACAATCTTTTTCCTAAAGGAAAATTGATGGAGTTTATTTTTGCCATTTCGCAGGGTAGTTGGCTTGAGATGTAAAATAGGACTTTTAGAGGGTTTGAGAGATCTGGAGATGAGCTTTGAGAGTTGTTTAGTTCGATTTAACTCTTCGATATGAATGCCCTGTTTTTTTGTTATTACCAGCATGGTCTCATTCTTTTTTTATTGAAATCCGGTCTAGTAGCTATCGTTGAGACTTCTTTCAGTGGACTTGTTTTTTGTATGCTCTTATATATCCCGATCGGTTTCTTGTTAAAAGAAAAGGTGGAATTTATGTGGTAAGTTGTTTTATGAAACTGAGTTATGATTTGGGTTGATGAACAGGCGCCCACAGCCAAGATTTACTCCACAGAACAAGCAGGATGTGCCTGCAACAAAGCAGGAAGCTGATGACGACAACTGGGATTTACCTGAAGAAGACAATCCATATTAACCTAATCCAAAAGTTCAGTCTCACCAAAATGTTTAATGTTTTCTGGTCATCTTTTGATTTTGGGAAGCTGTTAGTACCCTGTAGTGTAAGTTGTTTTCCATGTAATATCTTCTTTAGTTGAGAGGTTTTTGCAATACTCCTTTTGAATAAGTAGAAATGATCATTCCTTTTACGTATCAATTCTGGCAAACACCATGTGAAGATGGTTAAGTCCAGTCTAGTAACTTTTAAGTTTGCGTCTATTTGTTCTCTAAACTTCAAAAAGCGTCTACTAGATTTTTTAACTTTCATTTTTGTGTTCAATTGGTACTTGAAAGTGTCTTCTAGATCTTTAAACTTTCATTTTTGTGTTCAACTGGTACTTGAACTTTAAAATGTGTCTAACAAGTCCTTTAAACTTTCAATTTTGTGTCTAATAGACCTTTGACTTCTTTGACATTTTTCAAAAATTCACGAATCTAGTAGCACAAAATTGAAAGTTTAGAGCTTGTTTGGTAGGCAATCTGAAAACAGAGTTATATTTCATGTTTTCAGATATGTGTTTGGTAGCAAATTTTAGAATTGGATTCTAATTTAAACAATTGTTCAAAA

mRNA sequence

GAAAAAACAGCTAAGAAACCATTGGATTGGGAAACTTATCCACAAACAAGAGAGAGAAGGGCTGATCCCATCAATGGATGTCTCCAATTTGCAAACTTCACACTGATAAACAAATTTTGGGTCTTAGAAGAAGAAAGAAAAATTCCATTAAAAGTTCAAAACAGTGAGCAGATAAGACTGAATTCCTCCATTCTCAACCAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGTCCCCAAAGCCCCAACAGCCCTTCATTGCCTCTCCTTCTCCGGCGACTCAGGCCGCCGCTCAGTTTCAAACGCTCAAATCCAGAGATGGATCGGTTGCGCTAAAACCCCTTGAGGGTTCGAACCATTCCGAGCCCTTATCGGCGGAATTGGCCTCCGTGATCTGTCCCTCGCTGGCCTTCGCCAACACCATGTTCTTCAGTTCGGCGTATAATGTGCAGGTGATTGTGGATGATAATGAGCCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGTGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAATACTCAGGATGTCAGAAAGCGTAAGTCTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCACAGCCAAGATTTACTCCACAGAACAAGCAGGATGTGCCTGCAACAAAGCAGGAAGCTGATGACGACAACTGGGATTTACCTGAAGAAGACAATCCATATTAACCTAATCCAAAAGTTCAGTCTCACCAAAATGTTTAATGTTTTCTGGTCATCTTTTGATTTTGGGAAGCTGTTAGTACCCTGTAGTGTAAGTTGTTTTCCATGTAATATCTTCTTTAGTTGAGAGGTTTTTGCAATACTCCTTTTGAATAAGTAGAAATGATCATTCCTTTTACGTATCAATTCTGGCAAACACCATGTGAAGATGGTTAAGTCCAGTCTAGTAACTTTTAAGTTTGCGTCTATTTGTTCTCTAAACTTCAAAAAGCGTCTACTAGATTTTTTAACTTTCATTTTTGTGTTCAATTGGTACTTGAAAGTGTCTTCTAGATCTTTAAACTTTCATTTTTGTGTTCAACTGGTACTTGAACTTTAAAATGTGTCTAACAAGTCCTTTAAACTTTCAATTTTGTGTCTAATAGACCTTTGACTTCTTTGACATTTTTCAAAAATTCACGAATCTAGTAGCACAAAATTGAAAGTTTAGAGCTTGTTTGGTAGGCAATCTGAAAACAGAGTTATATTTCATGTTTTCAGATATGTGTTTGGTAGCAAATTTTAGAATTGGATTCTAATTTAAACAATTGTTCAAAA

Coding sequence (CDS)

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGTCCCCAAAGCCCCAACAGCCCTTCATTGCCTCTCCTTCTCCGGCGACTCAGGCCGCCGCTCAGTTTCAAACGCTCAAATCCAGAGATGGATCGGTTGCGCTAAAACCCCTTGAGGGTTCGAACCATTCCGAGCCCTTATCGGCGGAATTGGCCTCCGTGATCTGTCCCTCGCTGGCCTTCGCCAACACCATGTTCTTCAGTTCGGCGTATAATGTGCAGGTGATTGTGGATGATAATGAGCCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGTGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAATACTCAGGATGTCAGAAAGCGTAAGTCTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCACAGCCAAGATTTACTCCACAGAACAAGCAGGATGTGCCTGCAACAAAGCAGGAAGCTGATGACGACAACTGGGATTTACCTGAAGAAGACAATCCATATTAA

Protein sequence

MASLSSFFSFLLPSKPPSPKPQQPFIASPSPATQAAAQFQTLKSRDGSVALKPLEGSNHSEPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNPY

Homology

[Close]

BLAST of Tan0016046 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 6.5e-35
Identity = 98/189 (51.85%), Postives = 121/189 (64.02%), Query Frame = 0


Query: 1   MASLSSFFSFLLP------SKPPSPKPQQPFIASPSPATQAAAQFQTLKSRDGSVALKPL 60
           MAS SS  +FL P      S PPS  P+ P   S S + Q +    + K  + ++A K  
Sbjct: 1   MASTSSLLNFLSPLFPSNTSLPPSSNPKFPNPNSLS-SQQNSISISSKKHENAAIAKK-- 60

Query: 61  EGSNHSEPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAG 120
                 E    +L +V+CPSLAF+NT++F SAYNVQV+VDDNE EERLLNRFRREVMRAG
Sbjct: 61  ------EEYPGDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAG 120

Query: 121 VIQECKRRRFFENTQDVRKRKSREAAKRNRRRRPQP--RFTPQNKQDVPATKQEADDDNW 180
           VIQECKRRR+FEN Q+ +KRK REAAKRN RRR  P     P  ++     K+E D DNW
Sbjct: 121 VIQECKRRRYFENKQEEKKRKHREAAKRNSRRRRGPFRGPFPGKEEATKVDKKEDDGDNW 180

Query: 181 DLPEEDNPY 182
           D+PE   P+
Sbjct: 181 DMPEGGAPF 180

[Close]

BLAST of Tan0016046 vs. ExPASy Swiss-Prot
Match: P48949 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-04
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 90  QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRRR 148
           QV+V  NEP E  L RF+R+V +AG+  + K+ +FFE  Q+  KRK  EA +R +R R
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK--EATRRRQRSR 58

[Close]

BLAST of Tan0016046 vs. ExPASy Swiss-Prot
Match: B8GPU0 (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.5e-04
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 91  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRR 147
           V V +NEP E  L RF+R   +AGV+ E +RR F+E   ++RKRK+  A KR  +R
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKR 59

[Close]

BLAST of Tan0016046 vs. ExPASy Swiss-Prot
Match: A1WW12 (30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=349124 GN=rpsU PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.7e-04
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 91  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKRNRRR 147
           V V +NEP E  L RF+R   +AGV+ E +RR ++E    VRKRK   A KR+ +R
Sbjct: 4   VKVRENEPFEVALRRFKRSCEKAGVLSEIRRREYYEKPTQVRKRKQAAAVKRHMKR 59

[Close]

BLAST of Tan0016046 vs. ExPASy Swiss-Prot
Match: B4U8H0 (30S ribosomal protein S21 OS=Hydrogenobaculum sp. (strain Y04AAS1) OX=380749 GN=rpsU PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.7e-04
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 91  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKSREAAKR 143
           VIV D+E  E+ + RF++ V R G++ E KRR F+E     +KRK R A KR
Sbjct: 4   VIVGDSESFEKAMKRFKKVVEREGILSELKRREFYEKPSQKKKRKERAARKR 55

[Close]

BLAST of Tan0016046 vs. NCBI nr
Match: XP_022928327.1 (30S ribosomal protein S21, chloroplastic [Cucurbita moschata])

HSP 1 Score: 308.1 bits (788), Expect = 4.9e-80
Identity = 163/180 (90.56%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIASPSPATQAAAQFQTLKSRDGSVALKPLEGSNHS 60
           MASLS+FFSFLLPSKPP PKPQQPFIASPSPATQ+AAQFQTLKSRD SV+LKPL+GSNHS
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFF+SAYNVQVIVDDNEPEERLL RFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK 120

Query: 121 RRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNP 180
           RRR+FENTQD RKRK+REAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPEE  P
Sbjct: 121 RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 180

[Close]

BLAST of Tan0016046 vs. NCBI nr
Match: XP_008450090.2 (PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo])

HSP 1 Score: 307.8 bits (787), Expect = 6.4e-80
Identity = 168/183 (91.80%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIA-SPSPATQAAAQFQTLKSRDGSVALKPLEGSNH 60
           MASLSSFFSFLLPSKPP PKP QP IA SPSP   AAAQFQTLKSRDGSVALKP +G NH
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFF SAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEE-D 180
           KRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLPEE D
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEAD 228

Query: 181 NPY 182
            PY
Sbjct: 229 IPY 231

[Close]

BLAST of Tan0016046 vs. NCBI nr
Match: KAA0042889.1 (hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK05292.1 hypothetical protein E5676_scaffold108G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 6.4e-80
Identity = 168/183 (91.80%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIA-SPSPATQAAAQFQTLKSRDGSVALKPLEGSNH 60
           MASLSSFFSFLLPSKPP PKP QP IA SPSP   AAAQFQTLKSRDGSVALKP +G NH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFF SAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLP-EED 180
           KRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLP EED
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEED 180

Query: 181 NPY 182
            PY
Sbjct: 181 IPY 183

[Close]

BLAST of Tan0016046 vs. NCBI nr
Match: KAG6588905.1 (30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022670.1 30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 162/180 (90.00%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIASPSPATQAAAQFQTLKSRDGSVALKPLEGSNHS 60
           MASLS+FFSFLLPSKPP PKPQQPFIASPSPATQ+AAQFQTLKSRD SV+LKPL+GSNHS
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAF+NTMFF+SAYNVQVIVDDNEPEERLL RFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK 120

Query: 121 RRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNP 180
           RRR+FENTQD RKRK+REAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPEE  P
Sbjct: 121 RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 180

[Close]

BLAST of Tan0016046 vs. NCBI nr
Match: KAG6581093.1 (30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.4 bits (781), Expect = 3.2e-79
Identity = 163/181 (90.06%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIASPSPATQAAAQFQTLKSRDGSVALKPLEGSNHS 60
           MASLSSFFSFLLPSKPP PKP QP IASPSPA QAAAQFQTLKSRDGSVAL P + S HS
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFF SAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 121 RRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNP 180
           RR+FFEN  DV+KRKSREAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPEE  P
Sbjct: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

Query: 181 Y 182
           Y
Sbjct: 181 Y 181

[Close]

BLAST of Tan0016046 vs. ExPASy TrEMBL
Match: A0A6J1EJK9 (30S ribosomal protein S21, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435188 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.4e-80
Identity = 163/180 (90.56%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIASPSPATQAAAQFQTLKSRDGSVALKPLEGSNHS 60
           MASLS+FFSFLLPSKPP PKPQQPFIASPSPATQ+AAQFQTLKSRD SV+LKPL+GSNHS
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFF+SAYNVQVIVDDNEPEERLL RFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK 120

Query: 121 RRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNP 180
           RRR+FENTQD RKRK+REAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPEE  P
Sbjct: 121 RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 180

[Close]

BLAST of Tan0016046 vs. ExPASy TrEMBL
Match: A0A5D3C287 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001120 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80
Identity = 168/183 (91.80%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIA-SPSPATQAAAQFQTLKSRDGSVALKPLEGSNH 60
           MASLSSFFSFLLPSKPP PKP QP IA SPSP   AAAQFQTLKSRDGSVALKP +G NH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFF SAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLP-EED 180
           KRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLP EED
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEED 180

Query: 181 NPY 182
            PY
Sbjct: 181 IPY 183

[Close]

BLAST of Tan0016046 vs. ExPASy TrEMBL
Match: A0A1S3BNG4 (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80
Identity = 168/183 (91.80%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIA-SPSPATQAAAQFQTLKSRDGSVALKPLEGSNH 60
           MASLSSFFSFLLPSKPP PKP QP IA SPSP   AAAQFQTLKSRDGSVALKP +G NH
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFF SAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEE-D 180
           KRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLPEE D
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEAD 228

Query: 181 NPY 182
            PY
Sbjct: 229 IPY 231

[Close]

BLAST of Tan0016046 vs. ExPASy TrEMBL
Match: A0A6J1F281 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441722 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 163/181 (90.06%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIASPSPATQAAAQFQTLKSRDGSVALKPLEGSNHS 60
           MASLSSFFSFLLPSKPP PKP QP IASPSPA QAAAQFQTLKSRDGSVAL P + S HS
Sbjct: 32  MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 91

Query: 61  EPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFF SAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 92  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 151

Query: 121 RRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDNP 180
           RR+FFEN  DV+KRKSREAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPEE  P
Sbjct: 152 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 211

Query: 181 Y 182
           Y
Sbjct: 212 Y 212

[Close]

BLAST of Tan0016046 vs. ExPASy TrEMBL
Match: Q8VWX5 (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.8e-79
Identity = 161/180 (89.44%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIA-SPSPATQAAAQFQTLKSRDGSVALKPLEGSNH 60
           MASLSSFFSFLLPSKPP PKP QPFIA SPSP+  AA QFQTLKSRDGSVAL P +G NH
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 67

Query: 61  SEPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFF SAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 68  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 127

Query: 121 KRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPATKQEADDDNWDLPEEDN 180
           KRRRFFENTQDVRKRK+REAAKRNRRRRPQ RFTPQNKQDVPATKQEADDDNWDLPE+++
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 187

[Close]

BLAST of Tan0016046 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-40
Identity = 95/185 (51.35%), Postives = 129/185 (69.73%), Query Frame = 0


Query: 3   SLSSFFSFLLPSKPPSPKPQQPFIASPSPATQAAAQFQTLKSRDGSVALKPL---EGSNH 62
           SL+SF SF+ P K  +     P +  PSP           + R   +A++ +   E S+ 
Sbjct: 6   SLTSFISFISPFKSQTKPTPPPNLTLPSPTIS--------QRRRNDLAIESMAVEETSST 65

Query: 63  SEPLSAELASVICPSLAFANTMFFSSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 122
           +  LS+ELASVICPSLA++NT+FFSS YNVQV V+DNE EERL+NRFRREVMR GVIQEC
Sbjct: 66  ASSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQEC 125

Query: 123 KRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDVPAT----KQEADDDNWDLP 181
           KRRR+FEN QD +KR++R+AAKRN++RRPQ RFT + +++  A     K++ ++DNW++P
Sbjct: 126 KRRRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEMP 182

[Close]

BLAST of Tan0016046 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-22
Identity = 73/184 (39.67%), Postives = 112/184 (60.87%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIASPSPATQAAAQFQTLKSRDGSVALKPLEGSNHS 60
           + SLS   S LL SKPPSP   +P I  PS  +   +Q  ++ ++        +  + H 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKP-ITLPSSVSARTSQHLSMTTK--------ILTAEHD 65

Query: 61  EPLSAELASVICPSLAFANTMFF-SSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           + ++     V  PSLA AN +FF SS YNV+V+  D E EE+L+N F+R   RAGV+QE 
Sbjct: 66  DVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQES 125

Query: 121 KRRRFFENTQDVRKRKSREAAKRNRRRRPQPRFTPQNKQDV-----PATKQEADDDNWDL 179
           +RRRFFE++ + + RK++EAAK+ R+RRP P+  P +  ++      A++++  DD+W+L
Sbjct: 126 RRRRFFESSLEKKTRKTKEAAKKYRKRRPNPKPKPLSTSEIRKHNRNASREDEQDDHWEL 176

[Close]

BLAST of Tan0016046 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-17
Identity = 61/147 (41.50%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPSPKPQQPFIASPSPATQAAAQFQTLKSRDGSVALKPLEGSNHS 60
           + SLS   S LL SKPPSP   +P I  PS  +   +Q  ++ ++        +  + H 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKP-ITLPSSVSARTSQHLSMTTK--------ILTAEHD 65

Query: 61  EPLSAELASVICPSLAFANTMFF-SSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           + ++     V  PSLA AN +FF SS YNV+V+  D E EE+L+N F+R   RAGV+QE 
Sbjct: 66  DVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQES 125

Query: 121 KRRRFFENTQDVRKRKSREAAKRNRRR 147
           +RRRFFE++ + + RK++EAAK+ R+R
Sbjct: 126 RRRRFFESSLEKKTRKTKEAAKKYRKR 139

The following BLAST results are available for this feature:

BLAST of Tan0016046 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82024	6.5e-35	51.85	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
P48949	2.0e-04	46.55	30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
B8GPU0	3.5e-04	46.43	30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX...	[more]
A1WW12	7.7e-04	46.43	30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=...	[more]
B4U8H0	7.7e-04	46.15	30S ribosomal protein S21 OS=Hydrogenobaculum sp. (strain Y04AAS1) OX=380749 GN=...	[more]

BLAST of Tan0016046 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928327.1	4.9e-80	90.56	30S ribosomal protein S21, chloroplastic [Cucurbita moschata]	[more]
XP_008450090.2	6.4e-80	91.80	PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]	[more]
KAA0042889.1	6.4e-80	91.80	hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK0529...	[more]
KAG6588905.1	1.1e-79	90.00	30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
KAG6581093.1	3.2e-79	90.06	30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Tan0016046 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJK9	2.4e-80	90.56	30S ribosomal protein S21, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3C287	3.1e-80	91.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BNG4	3.1e-80	91.80	uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=...	[more]
A0A6J1F281	1.5e-79	90.06	30S ribosomal protein S21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
Q8VWX5	5.8e-79	89.44	Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1	[more]

BLAST of Tan0016046 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27160.1	3.1e-40	51.35	Ribosomal protein S21 family protein	[more]
AT5G63300.1	1.0e-22	39.67	Ribosomal protein S21 family protein	[more]
AT5G63300.2	2.8e-17	41.50	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 100..109 score: 43.33 coord: 112..122 score: 38.64 coord: 92..100 score: 42.59 coord: 124..134 score: 37.88
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 90..144 e-value: 1.7E-19 score: 69.3
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 89..146 e-value: 1.1E-13 score: 48.7
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 2..146
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 88..144 score: 14.053146
IPR038380	Ribosomal protein S21 superfamily	GENE3D	1.20.5.1150	Ribosomal protein S8	coord: 103..141 e-value: 9.7E-13 score: 49.3
None	No IPR available	PANTHER	PTHR21109:SF17	PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED	coord: 2..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016046.1	Tan0016046.1	mRNA
Tan0016046.2	Tan0016046.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0006412	translation
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome