Tan0016042 (gene) Snake gourd v1

Overview


Name	Tan0016042
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Atp-dependent rna helicase dbp7
Location	LG06: 11524680 .. 11526920 (-)
RNA-Seq Expression	Tan0016042
Synteny	Tan0016042

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTAAACCCCCTTTTTATAAATGCCCCCTCCTTAAACTTCCACTGGAATTCAATTCAACCACTGAACTCCCCCCATTCCCTTTCTCTCTCATCTCTCTCTGCAAACAACAAAGCTTCTTCAATGGAGGTTTAATCCTAATCTCTCTCTCTCTCTCTCTCTCTATTTGTTAATTTAATTATTATGAGTGGTTGTTAAGTTATTGTGGTTTGGGTTGCACAGGATTACTACTACCGTAGAAACTACATTCCGACGTTCGGAAACTGGGAATGGAACGACCATCTCCCCTTCACACAGTGCTTCGAATCTTCCAGAATCGCCGGATATTCCGACGTCCGCGATTTGTACGTCGCCGGCGATTTGTACCAAAACGATGTCGTTACACCTGCTATGATCGTCGTCCCTCGCCCCAGGGTAAACACTCACATTCTTTTTTTTCTTTTTTTTTTTTTTATTATTATTATTTTTTAATATGAATTAATTTGGAAAAATTGGGAAAATAAATTAAAGAGAGAATAAAAAAATGGATTAGAGTGCGCGGTGATGTGGCTTTAATGAGTGGATTCATATGACAATCCTTCGTGTGATTCATTTTTAGAGCACGCTTTTGAGACCCTTAAGCATGCTTTGCTTTTTCTTTCCAAAAAAAAAAAAAAAAAAGTGAAACTCCGTGATCGCCACGTGACTTTCATCATTCCTAAAGAACAAACTCAAAAAAAAGAAAAGTAGTCTCTATTATGTATTTATCTTTTTTTTTTTTTTTTTTTGAAATACTTGTTTTGTTTCTAATGTACTATTTTGACATAAAGAAAAATAAAATTGGCAAATATTTTGTTGAGATATCCATTGTTTTTTAACCTTCACAAGGGCAAATCTTGAAGTTTTCTAAAGCAACGGTAATTTTTATTCTAATAATATAAGTTGTAATACCTATTTTGTAATTTGTTAGTTTTGAGATTATGATAATTAAATTTAATTATTTTATAAAATGGGAATGAAATTGCAGAGGAAGCGTGACAGAGCTGGGAAGCAAGGAAAAAAGGAAAATTGGATGATGAATGTGAATGAAACTGAAAGCCCTCCTCCAGTATTAAAGCCAATGCCCAAGCCTGTTGACGAAGACTTGTACAAAATTTCTCCTGACCTCCTCGCCAAGCCCAAAAAGGTCTTTTTCCTCTTTTCCCTTTTTCTTTTTTCCTTTCCTTAATATTACTTTTTTAAAAAAAAAAACAAAAAAAACAAAAATTAATCTCCACTTTACAAAATTTCATATTTCATATTCCAATTGACATTACTGTGTAATTTATTTATTGTGTTTGACAATTGGATACGTCTTACTATATTACTCCTAATTAGTAACCTTTTCCACTTTTTCATTTTGCTTTATTACCTGCCTGGACACTCACAACAGTTAAACCAAAAAAAAAAAAAAAAACTTATTCGACTCGCTAAGTTATAATAATTATAACTTAGTCTGTGAGTTATAATATTATTTAAAATATAAAGTGGTCTAATCTAAAGTTATAATAATCTGTATTTGTAGGGTATAGTATTTACATATTATTATAACATGTGTTATTATAACTTGTGCTTCAAACCGGCCTTAAGGGTTTATTTGATGTGCATGTTAGAATAAGATTTGTTATAATAACATGTAGAATACTATACACCACAAACACAGACTATTAATCTTAGACTAAACTATTTTTGCATTCTAAACATAGATTATATAACACTATAGACTATTATAATCCACTTAGTGTGTCAAGCGTTAAGTGGGTTATAATAGTCTATTGATTTTTTTAAAGAAATATAGGTGGTAAATTATTGAATATATAAAATATATTAATATATTATGGTTTGATGATTATGCAGAAGAGAGGGTTGAGTTACATAACAAACTGCTTTGTGCCAACTTGTTTGATTTGAAGAAGAGAGAGATCCAAATCCATCATCAGCTGAAGGGGGCAATCAATGTATATTTATCTCATCAAAAACAGACACAGGCCAAACAGTATATAAATCTTTTGGGATATCATATTTATATATATATATATATATATTTTGAAGGCCAAAAAACAAAAAAAACAAAAAAAAAAATAGAATATCAATGTTTCTTTTATCCACCATAGATTCTAATTTTGGGAGTGTGTTTTAATTAGAGGGGAGAACTATTTGTACAAGGTTTTCCCATTGGTTACTATGTTGAGTGGTTTTTTTTTTTTTTTTTTTAAATTTGGTGT

mRNA sequence

ACTAAACCCCCTTTTTATAAATGCCCCCTCCTTAAACTTCCACTGGAATTCAATTCAACCACTGAACTCCCCCCATTCCCTTTCTCTCTCATCTCTCTCTGCAAACAACAAAGCTTCTTCAATGGAGGATTACTACTACCGTAGAAACTACATTCCGACGTTCGGAAACTGGGAATGGAACGACCATCTCCCCTTCACACAGTGCTTCGAATCTTCCAGAATCGCCGGATATTCCGACGTCCGCGATTTGTACGTCGCCGGCGATTTGTACCAAAACGATGTCGTTACACCTGCTATGATCGTCGTCCCTCGCCCCAGGAGGAAGCGTGACAGAGCTGGGAAGCAAGGAAAAAAGGAAAATTGGATGATGAATGTGAATGAAACTGAAAGCCCTCCTCCAGTATTAAAGCCAATGCCCAAGCCTGTTGACGAAGACTTGTACAAAATTTCTCCTGACCTCCTCGCCAAGCCCAAAAAGAAGAGAGGGTTGAGTTACATAACAAACTGCTTTGTGCCAACTTGTTTGATTTGAAGAAGAGAGAGATCCAAATCCATCATCAGCTGAAGGGGGCAATCAATGTATATTTATCTCATCAAAAACAGACACAGGCCAAACAGTATATAAATCTTTTGGGATATCATATTTATATATATATATATATATATTTTGAAGGCCAAAAAACAAAAAAAACAAAAAAAAAAATAGAATATCAATGTTTCTTTTATCCACCATAGATTCTAATTTTGGGAGTGTGTTTTAATTAGAGGGGAGAACTATTTGTACAAGGTTTTCCCATTGGTTACTATGTTGAGTGGTTTTTTTTTTTTTTTTTTTAAATTTGGTGT

Coding sequence (CDS)

ATGGAGGATTACTACTACCGTAGAAACTACATTCCGACGTTCGGAAACTGGGAATGGAACGACCATCTCCCCTTCACACAGTGCTTCGAATCTTCCAGAATCGCCGGATATTCCGACGTCCGCGATTTGTACGTCGCCGGCGATTTGTACCAAAACGATGTCGTTACACCTGCTATGATCGTCGTCCCTCGCCCCAGGAGGAAGCGTGACAGAGCTGGGAAGCAAGGAAAAAAGGAAAATTGGATGATGAATGTGAATGAAACTGAAAGCCCTCCTCCAGTATTAAAGCCAATGCCCAAGCCTGTTGACGAAGACTTGTACAAAATTTCTCCTGACCTCCTCGCCAAGCCCAAAAAGAAGAGAGGGTTGAGTTACATAACAAACTGCTTTGTGCCAACTTGTTTGATTTGA

Protein sequence

MEDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRAGKQGKKENWMMNVNETESPPPVLKPMPKPVDEDLYKISPDLLAKPKKKRGLSYITNCFVPTCLI

Homology

[Close]

BLAST of Tan0016042 vs. NCBI nr
Match: XP_038899118.1 (uncharacterized protein LOC120086508 [Benincasa hispida])

HSP 1 Score: 238.4 bits (607), Expect = 3.6e-59
Identity = 118/143 (82.52%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MEDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMI 60
           MEDYYYRRNYIP+FGNWEWNDHLPF+ CF+SSRIAGY    DLYVAGDLYQNDVVTPAMI
Sbjct: 1   MEDYYYRRNYIPSFGNWEWNDHLPFSHCFDSSRIAGYPHDTDLYVAGDLYQNDVVTPAMI 60

Query: 61  VVPRPRRKRDRAGKQGKKENWMMNVNETESPPPVL------KPMPKPVDEDLYKISPDLL 120
           VVPRPRRKRDR GKQG+KENWM    ETESPP  +      KPMPKPVDEDLYKISPDLL
Sbjct: 61  VVPRPRRKRDRQGKQGRKENWM---KETESPPNGMMNHYNTKPMPKPVDEDLYKISPDLL 120

Query: 121 -AKPKKKRGLSYITNCFVPTCLI 137
            AK KKKRGLSYITNCFVPTCLI
Sbjct: 121 AAKTKKKRGLSYITNCFVPTCLI 140

[Close]

BLAST of Tan0016042 vs. NCBI nr
Match: XP_023550147.1 (uncharacterized protein LOC111808425 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234.2 bits (596), Expect = 6.7e-58
Identity = 114/140 (81.43%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MEDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMI 60
           MEDY Y+RN+IPTFGNWEWNDHLPFTQCFE+SRIAGY DVRDLYVAGDLYQNDVVTPAMI
Sbjct: 1   MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMI 60

Query: 61  VVPRPRRKRDRAGKQGKKENWMMNVNETESPPPVL----KPMPKPVDEDLYKISPDLLAK 120
           VVPRPRRKRDR GKQ  ++ W      TESPP V     KPMPKPVDEDLYKISP+L AK
Sbjct: 61  VVPRPRRKRDRHGKQEMQQKW------TESPPQVTLHPPKPMPKPVDEDLYKISPNLCAK 120

Query: 121 PKKKRGLSYITNCFVPTCLI 137
           PKKKRGLSYIT+CFVPTCLI
Sbjct: 121 PKKKRGLSYITSCFVPTCLI 134

[Close]

BLAST of Tan0016042 vs. NCBI nr
Match: XP_022960043.1 (uncharacterized protein LOC111460910 [Cucurbita moschata] >XP_023004237.1 uncharacterized protein LOC111497631 [Cucurbita maxima] >KAG6593050.1 hypothetical protein SDJN03_12526, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025458.1 hypothetical protein SDJN02_11953 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.8 bits (595), Expect = 8.8e-58
Identity = 114/140 (81.43%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MEDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMI 60
           MEDY Y+RN+IPTFGNWEWNDHLPFTQCFE+SRIAGY DVRDLYVAGDLYQNDVVTPAMI
Sbjct: 1   MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMI 60

Query: 61  VVPRPRRKRDRAGKQGKKENWMMNVNETESPPPVL----KPMPKPVDEDLYKISPDLLAK 120
           VVPRPRRKRDR GKQ K++ W      TESPP V     KPMPKPVDEDLYKISP+  AK
Sbjct: 61  VVPRPRRKRDRHGKQEKQQKW------TESPPQVTLHPPKPMPKPVDEDLYKISPNPCAK 120

Query: 121 PKKKRGLSYITNCFVPTCLI 137
           PKKKRGLSYIT+CFVPTCLI
Sbjct: 121 PKKKRGLSYITSCFVPTCLI 134

[Close]

BLAST of Tan0016042 vs. NCBI nr
Match: XP_004150335.2 (uncharacterized protein LOC101219200 [Cucumis sativus] >KGN44691.1 hypothetical protein Csa_016635 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-54
Identity = 111/137 (81.02%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 1   MEDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMI 60
           MEDYYYRRNYIP+FGNWEWNDHLPF+ CFESSRIAG+    DLYVAGDLY+NDVVTPAMI
Sbjct: 1   MEDYYYRRNYIPSFGNWEWNDHLPFSHCFESSRIAGFPHDTDLYVAGDLYENDVVTPAMI 60

Query: 61  VVPRPRRKRDRAGKQGKKENWMMNVNETESPPPVLKPMPKPVDEDLYKISPDLL-AKPKK 120
           VVPRPRRKRDR GKQ KKE W    N   S     KPMPKPVDEDLYKISPDLL AK KK
Sbjct: 61  VVPRPRRKRDRQGKQSKKEKWGSPSNGM-SHNYSTKPMPKPVDEDLYKISPDLLAAKSKK 120

Query: 121 KRGLSYITNCFVPTCLI 137
           KRGLSYITNCFVPTCLI
Sbjct: 121 KRGLSYITNCFVPTCLI 136

[Close]

BLAST of Tan0016042 vs. NCBI nr
Match: XP_023548222.1 (uncharacterized protein LOC111806925 [Cucurbita pepo subsp. pepo] >XP_023548223.1 uncharacterized protein LOC111806926 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-53
Identity = 105/140 (75.00%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MEDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMI 60
           MEDYY RRNYIP+FGNWEWNDHL F+ CFESSRIAGY    DLYV GDLY+NDVVTPAMI
Sbjct: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGYPHDTDLYVTGDLYENDVVTPAMI 60

Query: 61  VVPRPRRKRDRAGKQGKKENWMMNVNETESPPPVL----KPMPKPVDEDLYKISPDLLAK 120
           VVPR RRKR++ GKQGKK NWMMN+ ETESPP  L    +P PKPVDEDLYKI P+LLAK
Sbjct: 61  VVPRHRRKREKQGKQGKKANWMMNMKETESPPHELLQFPRPKPKPVDEDLYKIPPELLAK 120

Query: 121 PKKKRGLSYITNCFVPTCLI 137
            +KKRGLS+  N FVP CLI
Sbjct: 121 SRKKRGLSFFANWFVPNCLI 140

[Close]

BLAST of Tan0016042 vs. ExPASy TrEMBL
Match: A0A6J1KPV8 (uncharacterized protein LOC111497631 OS=Cucurbita maxima OX=3661 GN=LOC111497631 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.3e-58
Identity = 114/140 (81.43%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MEDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMI 60
           MEDY Y+RN+IPTFGNWEWNDHLPFTQCFE+SRIAGY DVRDLYVAGDLYQNDVVTPAMI
Sbjct: 1   MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMI 60

Query: 61  VVPRPRRKRDRAGKQGKKENWMMNVNETESPPPVL----KPMPKPVDEDLYKISPDLLAK 120
           VVPRPRRKRDR GKQ K++ W      TESPP V     KPMPKPVDEDLYKISP+  AK
Sbjct: 61  VVPRPRRKRDRHGKQEKQQKW------TESPPQVTLHPPKPMPKPVDEDLYKISPNPCAK 120

Query: 121 PKKKRGLSYITNCFVPTCLI 137
           PKKKRGLSYIT+CFVPTCLI
Sbjct: 121 PKKKRGLSYITSCFVPTCLI 134

[Close]

BLAST of Tan0016042 vs. ExPASy TrEMBL
Match: A0A6J1H7P4 (uncharacterized protein LOC111460910 OS=Cucurbita moschata OX=3662 GN=LOC111460910 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.3e-58
Identity = 114/140 (81.43%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MEDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMI 60
           MEDY Y+RN+IPTFGNWEWNDHLPFTQCFE+SRIAGY DVRDLYVAGDLYQNDVVTPAMI
Sbjct: 1   MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMI 60

Query: 61  VVPRPRRKRDRAGKQGKKENWMMNVNETESPPPVL----KPMPKPVDEDLYKISPDLLAK 120
           VVPRPRRKRDR GKQ K++ W      TESPP V     KPMPKPVDEDLYKISP+  AK
Sbjct: 61  VVPRPRRKRDRHGKQEKQQKW------TESPPQVTLHPPKPMPKPVDEDLYKISPNPCAK 120

Query: 121 PKKKRGLSYITNCFVPTCLI 137
           PKKKRGLSYIT+CFVPTCLI
Sbjct: 121 PKKKRGLSYITSCFVPTCLI 134

[Close]

BLAST of Tan0016042 vs. ExPASy TrEMBL
Match: A0A0A0KA54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372860 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.7e-55
Identity = 111/137 (81.02%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 1   MEDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMI 60
           MEDYYYRRNYIP+FGNWEWNDHLPF+ CFESSRIAG+    DLYVAGDLY+NDVVTPAMI
Sbjct: 1   MEDYYYRRNYIPSFGNWEWNDHLPFSHCFESSRIAGFPHDTDLYVAGDLYENDVVTPAMI 60

Query: 61  VVPRPRRKRDRAGKQGKKENWMMNVNETESPPPVLKPMPKPVDEDLYKISPDLL-AKPKK 120
           VVPRPRRKRDR GKQ KKE W    N   S     KPMPKPVDEDLYKISPDLL AK KK
Sbjct: 61  VVPRPRRKRDRQGKQSKKEKWGSPSNGM-SHNYSTKPMPKPVDEDLYKISPDLLAAKSKK 120

Query: 121 KRGLSYITNCFVPTCLI 137
           KRGLSYITNCFVPTCLI
Sbjct: 121 KRGLSYITNCFVPTCLI 136

[Close]

BLAST of Tan0016042 vs. ExPASy TrEMBL
Match: A0A6J1JQ37 (uncharacterized protein LOC111487931 OS=Cucurbita maxima OX=3661 GN=LOC111487931 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.4e-53
Identity = 102/140 (72.86%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MEDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMI 60
           MEDYY RRNYIP+FGNWEWNDHL F+ CFESSRIAGY    DLYV GDLY+ND++TPAMI
Sbjct: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGYPHDTDLYVTGDLYENDIITPAMI 60

Query: 61  VVPRPRRKRDRAGKQGKKENWMMNVNETESPPPVL----KPMPKPVDEDLYKISPDLLAK 120
           VVPR RRKR++ GK+GKK NWMMN+ ETESPP  L    +P PKPVDEDLYKI P+LLAK
Sbjct: 61  VVPRHRRKREKQGKKGKKANWMMNMKETESPPHELLQFPRPKPKPVDEDLYKIPPELLAK 120

Query: 121 PKKKRGLSYITNCFVPTCLI 137
            +KKRGLS+  N FVP CLI
Sbjct: 121 SRKKRGLSFFANWFVPNCLI 140

[Close]

BLAST of Tan0016042 vs. ExPASy TrEMBL
Match: A0A6J1GPL2 (uncharacterized protein LOC111455979 OS=Cucurbita moschata OX=3662 GN=LOC111455979 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.0e-51
Identity = 103/140 (73.57%), Postives = 114/140 (81.43%), Query Frame = 0


Query: 1   MEDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMI 60
           MEDYY RRNYIP+FGNWEWNDHL F+ CFESSRIAGY    DLYV GDLY+NDVVTPAMI
Sbjct: 1   MEDYYCRRNYIPSFGNWEWNDHLRFSHCFESSRIAGYPHDTDLYVTGDLYENDVVTPAMI 60

Query: 61  VVPRPRRKRDRAGKQGKKENWMMNVNETESPPPVL----KPMPKPVDEDLYKISPDLLAK 120
           VVPR RRKR++ GKQGKK N+ MN+ ETESPP  L    +P PKPVDEDLYKI P+LLAK
Sbjct: 61  VVPRHRRKREKQGKQGKKANY-MNMKETESPPHELLQFPRPKPKPVDEDLYKIPPELLAK 120

Query: 121 PKKKRGLSYITNCFVPTCLI 137
            +KKRGLS+  N FVP CLI
Sbjct: 121 SRKKRGLSFFANWFVPNCLI 139

[Close]

BLAST of Tan0016042 vs. TAIR 10
Match: AT5G48500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-26
Identity = 70/157 (44.59%), Postives = 90/157 (57.32%), Query Frame = 0


Query: 5   YYRRNYIPTFGNWEWNDHLPFTQCFESS--------RIAGYSDVRDLYVAGDLYQN-DVV 64
           Y RR ++P FG+W+WND +PFTQCFE++          A Y   RDLY+AGDLY N  +V
Sbjct: 10  YCRRGHVPAFGSWDWNDAVPFTQCFETATTQQPAFLHYASYPQDRDLYLAGDLYDNHHLV 69

Query: 65  TPAMIVVPR--------PRRKRDRAGKQGKKENWMMNVNE----TESPPPVLK---PMPK 124
            PA+I+VPR        P  K+    KQ  + N+     E       P PV+K     PK
Sbjct: 70  APAVIIVPRRRAKVGQEPAEKKRNVSKQ--QHNYKTEAREFNAPVSCPTPVVKRRMKAPK 129

Query: 125 PVDEDLYKISPDLLA-KPKKKR---GLSYITNCFVPT 134
           PVDEDLYK+SP LL+ K K+KR   G   I+ CF+PT
Sbjct: 130 PVDEDLYKVSPQLLSVKSKRKRGGGGFGCISRCFLPT 164

[Close]

BLAST of Tan0016042 vs. TAIR 10
Match: AT5G18310.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-07
Identity = 45/162 (27.78%), Postives = 70/162 (43.21%), Query Frame = 0


Query: 2   EDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMIV 61
           + Y  +   IP FG WE  + +P TQ FE+ R AG   +R  Y       +   + +   
Sbjct: 7   DTYKKKSGQIPRFGEWEEANEMPITQYFENPRQAGL--IRHQYTTTSSASSTTTSSSSSS 66

Query: 62  V------------PRPRR---KRDRAGKQGKK-------------ENWMMNVN---ETES 121
                        PRPR    +R  AG + K+             + + ++VN   + ++
Sbjct: 67  SSSAEALKLASHHPRPRHLHAQRQTAGTKEKRGPQRRVRDVSAQSDKYYIDVNGVKQFKN 126

Query: 122 PPPVLKPMPKPVDEDLYKISPDLLAKPKKKRGLSYITNCFVP 133
              +    PKPVDEDLYKI P+ +    +KR  S++  C VP
Sbjct: 127 DVALTCKPPKPVDEDLYKIPPEFIHSSTRKRRPSFLA-CLVP 165

[Close]

BLAST of Tan0016042 vs. TAIR 10
Match: AT5G18310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 3.4e-07
Identity = 40/132 (30.30%), Postives = 59/132 (44.70%), Query Frame = 0


Query: 2   EDYYYRRNYIPTFGNWEWNDHLPFTQCFESSRIAGYSDVRDLYVAGDLYQNDVVTPAMIV 61
           + Y  +   IP FG WE  + +P TQ FE+ R A    +   +           T     
Sbjct: 7   DTYKKKSGQIPRFGEWEEANEMPITQYFENPRQAEALKLASHHPRPRHLHAQRQTAGTKE 66

Query: 62  VPRP-RRKRDRAGKQGKKENWMMNVNETESPPPVLKPMPKPVDEDLYKISPDLLAKPKKK 121
              P RR RD + +  K    +  V + ++   +    PKPVDEDLYKI P+ +    +K
Sbjct: 67  KRGPQRRVRDVSAQSDKYYIDVNGVKQFKNDVALTCKPPKPVDEDLYKIPPEFIHSSTRK 126

Query: 122 RGLSYITNCFVP 133
           R  S++  C VP
Sbjct: 127 RRPSFLA-CLVP 137

The following BLAST results are available for this feature:

BLAST of Tan0016042 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016042 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899118.1	3.6e-59	82.52	uncharacterized protein LOC120086508 [Benincasa hispida]	[more]
XP_023550147.1	6.7e-58	81.43	uncharacterized protein LOC111808425 [Cucurbita pepo subsp. pepo]	[more]
XP_022960043.1	8.8e-58	81.43	uncharacterized protein LOC111460910 [Cucurbita moschata] >XP_023004237.1 unchar...	[more]
XP_004150335.2	1.2e-54	81.02	uncharacterized protein LOC101219200 [Cucumis sativus] >KGN44691.1 hypothetical ...	[more]
XP_023548222.1	1.0e-53	75.00	uncharacterized protein LOC111806925 [Cucurbita pepo subsp. pepo] >XP_023548223....	[more]

BLAST of Tan0016042 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KPV8	4.3e-58	81.43	uncharacterized protein LOC111497631 OS=Cucurbita maxima OX=3661 GN=LOC111497631...	[more]
A0A6J1H7P4	4.3e-58	81.43	uncharacterized protein LOC111460910 OS=Cucurbita moschata OX=3662 GN=LOC1114609...	[more]
A0A0A0KA54	5.7e-55	81.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372860 PE=4 SV=1	[more]
A0A6J1JQ37	2.4e-53	72.86	uncharacterized protein LOC111487931 OS=Cucurbita maxima OX=3661 GN=LOC111487931...	[more]
A0A6J1GPL2	5.0e-51	73.57	uncharacterized protein LOC111455979 OS=Cucurbita moschata OX=3662 GN=LOC1114559...	[more]

BLAST of Tan0016042 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48500.1	1.9e-26	44.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G18310.2	2.6e-07	27.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G18310.1	3.4e-07	30.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..98
None	No IPR available	PANTHER	PTHR33699	EXPRESSED PROTEIN	coord: 1..135
None	No IPR available	PANTHER	PTHR33699:SF2	PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN-RELATED	coord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016042.1	Tan0016042.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004386	helicase activity