Tan0016037 (gene) Snake gourd v1

Overview


Name	Tan0016037
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	mitochondrial import receptor subunit TOM9-2-like
Location	LG10: 5144666 .. 5144980 (+)
RNA-Seq Expression	Tan0016037
Synteny	Tan0016037

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTCAATGGCAAGAAGCGATTGTCGCTCACCAACAACGACGACGACGACGCCGGTGTCCTTTCCAGATTATCGCGTTCCGTGTCCGAGTCCGCGATCTATCGCCAATCCAAACGCGCCGCTTCAAATACCGCCTTCGTCACCAATAAACTGTTGCGGAGCACCGGTAAGGCCGCCTGGATCGCCGGCACCACATTCCTCATCCTCGTCGTGCCGCTCATCATCGAAATGGATCGCGAACAGCAGCTCAATGAACTCGAGTTGCAGCAGGCCACCTTGCTCGGTGCCCCCGCCGTGTCGGTTCAAAAGTGA

mRNA sequence

ATGGCGGTCAATGGCAAGAAGCGATTGTCGCTCACCAACAACGACGACGACGACGCCGGTGTCCTTTCCAGATTATCGCGTTCCGTGTCCGAGTCCGCGATCTATCGCCAATCCAAACGCGCCGCTTCAAATACCGCCTTCGTCACCAATAAACTGTTGCGGAGCACCGGTAAGGCCGCCTGGATCGCCGGCACCACATTCCTCATCCTCGTCGTGCCGCTCATCATCGAAATGGATCGCGAACAGCAGCTCAATGAACTCGAGTTGCAGCAGGCCACCTTGCTCGGTGCCCCCGCCGTGTCGGTTCAAAAGTGA

Coding sequence (CDS)

ATGGCGGTCAATGGCAAGAAGCGATTGTCGCTCACCAACAACGACGACGACGACGCCGGTGTCCTTTCCAGATTATCGCGTTCCGTGTCCGAGTCCGCGATCTATCGCCAATCCAAACGCGCCGCTTCAAATACCGCCTTCGTCACCAATAAACTGTTGCGGAGCACCGGTAAGGCCGCCTGGATCGCCGGCACCACATTCCTCATCCTCGTCGTGCCGCTCATCATCGAAATGGATCGCGAACAGCAGCTCAATGAACTCGAGTTGCAGCAGGCCACCTTGCTCGGTGCCCCCGCCGTGTCGGTTCAAAAGTGA

Protein sequence

MAVNGKKRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAAWIAGTTFLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK

Homology

[Close]

BLAST of Tan0016037 vs. ExPASy Swiss-Prot
Match: Q9FNC9 (Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana OX=3702 GN=TOM9-2 PE=1 SV=3)

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-21
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 7   KRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAAWIAGTT 66
           KR+    +   D  +L+R    +S S I  Q +RAA +   V+ KLLRSTGKAAWIAGTT
Sbjct: 4   KRIGAGKSGGGDPNILAR----ISNSEIVSQGRRAAGDAVEVSKKLLRSTGKAAWIAGTT 63

Query: 67  FLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
           FLILVVPLIIEMDRE Q+NE+ELQQA+LLGAP   +Q+
Sbjct: 64  FLILVVPLIIEMDREAQINEIELQQASLLGAPPSPMQR 97

[Close]

BLAST of Tan0016037 vs. ExPASy Swiss-Prot
Match: O64497 (Mitochondrial import receptor subunit TOM9-1 OS=Arabidopsis thaliana OX=3702 GN=TOM9-1 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-15
Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 23  SRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAAWIAGTTFLILVVPLIIEMDREQ 82
           S +   +S   I  Q +RAA +  +V+ KLL+STGKAAWIAGTTFLIL VPLI+E++++ 
Sbjct: 13  SSILAKISNYDIVSQGRRAACDAVYVSKKLLKSTGKAAWIAGTTFLILAVPLILELEQDH 72

Query: 83  QLNELELQQATLLGAPAV 101
           +L E++ +QA+LLG P V
Sbjct: 73  RLGEIDFEQASLLGTPPV 90

[Close]

BLAST of Tan0016037 vs. NCBI nr
Match: KGN56814.1 (hypothetical protein Csa_011788 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-37
Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MAVNGKKRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAA 60
           MAVNGK RLSLT+NDD DAGVLSR SRS SES+IYRQSKRAASNTAFVTNKLLRSTGKA 
Sbjct: 1   MAVNGKNRLSLTSNDDGDAGVLSRFSRSDSESSIYRQSKRAASNTAFVTNKLLRSTGKAV 60

Query: 61  WIAGTTFLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
            IAGTTFLIL+VPLIIEMDREQQLNE++LQQATLLGA  VSVQK
Sbjct: 61  CIAGTTFLILIVPLIIEMDREQQLNEIDLQQATLLGASTVSVQK 104

[Close]

BLAST of Tan0016037 vs. NCBI nr
Match: XP_008438464.1 (PREDICTED: mitochondrial import receptor subunit TOM9-2-like [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MAVNGKKRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAA 60
           MAVNGK RLSLT+NDD DA    R SRSVSES+IYRQS+RAASNTAFVTN+LLRSTGKAA
Sbjct: 1   MAVNGKNRLSLTSNDDSDA----RFSRSVSESSIYRQSRRAASNTAFVTNELLRSTGKAA 60

Query: 61  WIAGTTFLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
           WIAGTTFLIL+VPLIIEMDREQQLNE ELQQATLLGAPAVSVQK
Sbjct: 61  WIAGTTFLILIVPLIIEMDREQQLNEFELQQATLLGAPAVSVQK 100

[Close]

BLAST of Tan0016037 vs. NCBI nr
Match: XP_038875758.1 (mitochondrial import receptor subunit TOM9-2-like [Benincasa hispida])

HSP 1 Score: 137.5 bits (345), Expect = 6.6e-29
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 1   MAVNGKKRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAA 60
           MA  G KR S+TN  DD+ GVLSR+SRSVS+S I R++K  AS+ AFVT KLLRSTGKAA
Sbjct: 1   MASRGNKRPSITNG-DDNLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAA 60

Query: 61  WIAGTTFLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
           WIAGTTFLILVVPLIIEMDREQQ NELE+QQA+LLG PA +  K
Sbjct: 61  WIAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAASK 103

[Close]

BLAST of Tan0016037 vs. NCBI nr
Match: XP_022138842.1 (mitochondrial import receptor subunit TOM9-2-like [Momordica charantia])

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MAVNGKKRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAA 60
           MA  G KR SLTN  D+++GVLSR+SRSVS+S I R++K  AS+ AFVT KLLRSTG+AA
Sbjct: 1   MASRGNKRASLTNG-DENSGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGRAA 60

Query: 61  WIAGTTFLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
           WIAGTTFLILVVPLIIEMDREQQ NELE+QQA+LLG PA +  K
Sbjct: 61  WIAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 103

[Close]

BLAST of Tan0016037 vs. NCBI nr
Match: XP_023514145.1 (mitochondrial import receptor subunit TOM9-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-28
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MAVNGKKRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAA 60
           MA  G KR S+TN  DD+ GVLSR+SRSVS+S I +++K  AS+ AFV+ KLLRSTGKAA
Sbjct: 1   MASRGNKRPSITNG-DDNLGVLSRVSRSVSDSQIVQRAKSTASDAAFVSQKLLRSTGKAA 60

Query: 61  WIAGTTFLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
           WIAGTTFLILVVPLIIEMDREQQ NELE+QQA+LLGAPA +  K
Sbjct: 61  WIAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGAPATAAPK 103

[Close]

BLAST of Tan0016037 vs. ExPASy TrEMBL
Match: A0A0A0L6Z2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134630 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.9e-38
Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MAVNGKKRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAA 60
           MAVNGK RLSLT+NDD DAGVLSR SRS SES+IYRQSKRAASNTAFVTNKLLRSTGKA 
Sbjct: 1   MAVNGKNRLSLTSNDDGDAGVLSRFSRSDSESSIYRQSKRAASNTAFVTNKLLRSTGKAV 60

Query: 61  WIAGTTFLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
            IAGTTFLIL+VPLIIEMDREQQLNE++LQQATLLGA  VSVQK
Sbjct: 61  CIAGTTFLILIVPLIIEMDREQQLNEIDLQQATLLGASTVSVQK 104

[Close]

BLAST of Tan0016037 vs. ExPASy TrEMBL
Match: A0A1S3AX26 (mitochondrial import receptor subunit TOM9-2-like OS=Cucumis melo OX=3656 GN=LOC103483549 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.3e-38
Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MAVNGKKRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAA 60
           MAVNGK RLSLT+NDD DA    R SRSVSES+IYRQS+RAASNTAFVTN+LLRSTGKAA
Sbjct: 1   MAVNGKNRLSLTSNDDSDA----RFSRSVSESSIYRQSRRAASNTAFVTNELLRSTGKAA 60

Query: 61  WIAGTTFLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
           WIAGTTFLIL+VPLIIEMDREQQLNE ELQQATLLGAPAVSVQK
Sbjct: 61  WIAGTTFLILIVPLIIEMDREQQLNEFELQQATLLGAPAVSVQK 100

[Close]

BLAST of Tan0016037 vs. ExPASy TrEMBL
Match: A0A6J1CCC4 (mitochondrial import receptor subunit TOM9-2-like OS=Momordica charantia OX=3673 GN=LOC111009913 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.4e-29
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MAVNGKKRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAA 60
           MA  G KR SLTN  D+++GVLSR+SRSVS+S I R++K  AS+ AFVT KLLRSTG+AA
Sbjct: 1   MASRGNKRASLTNG-DENSGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGRAA 60

Query: 61  WIAGTTFLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
           WIAGTTFLILVVPLIIEMDREQQ NELE+QQA+LLG PA +  K
Sbjct: 61  WIAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 103

[Close]

BLAST of Tan0016037 vs. ExPASy TrEMBL
Match: A0A5D3CY80 (Mitochondrial import receptor subunit TOM9-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00090 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.7e-28
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 1   MAVNGKKRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAA 60
           MA  G KR S+TN  DD+ G+LSR+SRSVS+S I R++K  AS+ AFV+ KLLRSTGKAA
Sbjct: 1   MASRGNKRPSITNG-DDNLGILSRVSRSVSDSQIVRRAKSTASDAAFVSKKLLRSTGKAA 60

Query: 61  WIAGTTFLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
           WIAGTTFLILVVPLIIEMDREQQ NELE+QQA+LLG PA +  K
Sbjct: 61  WIAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAGSK 103

[Close]

BLAST of Tan0016037 vs. ExPASy TrEMBL
Match: A0A0A0LNL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G171830 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.7e-28
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 1   MAVNGKKRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAA 60
           MA  G KR S+TN  DD+ G+LSR+SRSVS+S I R++K  AS+ AFV+ KLLRSTGKAA
Sbjct: 1   MASRGNKRPSITNG-DDNLGILSRVSRSVSDSQIVRRAKSTASDAAFVSKKLLRSTGKAA 60

Query: 61  WIAGTTFLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
           WIAGTTFLILVVPLIIEMDREQQ NELE+QQA+LLG PA +  K
Sbjct: 61  WIAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAGSK 103

[Close]

BLAST of Tan0016037 vs. TAIR 10
Match: AT5G43970.1 (translocase of outer membrane 22-V )

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-22
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 7   KRLSLTNNDDDDAGVLSRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAAWIAGTT 66
           KR+    +   D  +L+R    +S S I  Q +RAA +   V+ KLLRSTGKAAWIAGTT
Sbjct: 4   KRIGAGKSGGGDPNILAR----ISNSEIVSQGRRAAGDAVEVSKKLLRSTGKAAWIAGTT 63

Query: 67  FLILVVPLIIEMDREQQLNELELQQATLLGAPAVSVQK 105
           FLILVVPLIIEMDRE Q+NE+ELQQA+LLGAP   +Q+
Sbjct: 64  FLILVVPLIIEMDREAQINEIELQQASLLGAPPSPMQR 97

[Close]

BLAST of Tan0016037 vs. TAIR 10
Match: AT1G04070.1 (translocase of outer membrane 22-I )

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-16
Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 23  SRLSRSVSESAIYRQSKRAASNTAFVTNKLLRSTGKAAWIAGTTFLILVVPLIIEMDREQ 82
           S +   +S   I  Q +RAA +  +V+ KLL+STGKAAWIAGTTFLIL VPLI+E++++ 
Sbjct: 13  SSILAKISNYDIVSQGRRAACDAVYVSKKLLKSTGKAAWIAGTTFLILAVPLILELEQDH 72

Query: 83  QLNELELQQATLLGAPAV 101
           +L E++ +QA+LLG P V
Sbjct: 73  RLGEIDFEQASLLGTPPV 90

The following BLAST results are available for this feature:

BLAST of Tan0016037 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNC9	1.8e-21	59.18	Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O64497	3.3e-15	52.56	Mitochondrial import receptor subunit TOM9-1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Tan0016037 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56814.1	1.0e-37	87.50	hypothetical protein Csa_011788 [Cucumis sativus]	[more]
XP_008438464.1	1.7e-37	87.50	PREDICTED: mitochondrial import receptor subunit TOM9-2-like [Cucumis melo]	[more]
XP_038875758.1	6.6e-29	73.08	mitochondrial import receptor subunit TOM9-2-like [Benincasa hispida]	[more]
XP_022138842.1	1.1e-28	72.12	mitochondrial import receptor subunit TOM9-2-like [Momordica charantia]	[more]
XP_023514145.1	2.5e-28	72.12	mitochondrial import receptor subunit TOM9-2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0016037 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Z2	4.9e-38	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134630 PE=4 SV=1	[more]
A0A1S3AX26	8.3e-38	87.50	mitochondrial import receptor subunit TOM9-2-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1CCC4	5.4e-29	72.12	mitochondrial import receptor subunit TOM9-2-like OS=Momordica charantia OX=3673...	[more]
A0A5D3CY80	2.7e-28	71.15	Mitochondrial import receptor subunit TOM9-2-like OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0LNL3	2.7e-28	71.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G171830 PE=3 SV=1	[more]

BLAST of Tan0016037 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43970.1	1.3e-22	59.18	translocase of outer membrane 22-V	[more]
AT1G04070.1	2.3e-16	52.56	translocase of outer membrane 22-I	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005683	Mitochondrial import receptor subunit Tom22	PFAM	PF04281	Tom22	coord: 40..92 e-value: 4.3E-8 score: 33.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
IPR017411	Mitochondrial outer membrane translocase complex, subunit Tom22, plant	PANTHER	PTHR46867	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM9-2	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016037.1	Tan0016037.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005741	mitochondrial outer membrane