Tan0016016 (gene) Snake gourd v1

Overview


Name	Tan0016016
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	LG01: 36325179 .. 36325526 (+)
RNA-Seq Expression	Tan0016016
Synteny	Tan0016016

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTAATGTTCTCAATTGCGATGCCAATCCCAAATTTAGTACATTTATATATCAATGTAAGAAGGATCAATGTGAATGTACAAAGGTTTGAAGAAACGTCTATTCAATCTGTTGATCCTAGCCTAGGTGTTGAATCCAACCAATGTCTTGACCTAGATCCTCAAATAGTTGGTACACCGTGTGATGATGAAGATATGGTTACAAATAATACATATAAAGAGTTTAGAACTGAAACAGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTATATGACATCCCTTCAAACACATTTAATGAGTTGGATAACAATGTATTAGATAACACTACAAGAACATGA

mRNA sequence

ATGAACTTAATGTTCTCAATTGCGATGCCAATCCCAAATTTAGTACATTTATATATCAATGTAAGAAGGATCAATGTGAATGTACAAAGGTTTGAAGAAACGTCTATTCAATCTGTTGATCCTAGCCTAGGTGTTGAATCCAACCAATGTCTTGACCTAGATCCTCAAATAGTTGGTACACCGTGTGATGATGAAGATATGGTTACAAATAATACATATAAAGAGTTTAGAACTGAAACAGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTATATGACATCCCTTCAAACACATTTAATGAGTTGGATAACAATGTATTAGATAACACTACAAGAACATGA

Coding sequence (CDS)

ATGAACTTAATGTTCTCAATTGCGATGCCAATCCCAAATTTAGTACATTTATATATCAATGTAAGAAGGATCAATGTGAATGTACAAAGGTTTGAAGAAACGTCTATTCAATCTGTTGATCCTAGCCTAGGTGTTGAATCCAACCAATGTCTTGACCTAGATCCTCAAATAGTTGGTACACCGTGTGATGATGAAGATATGGTTACAAATAATACATATAAAGAGTTTAGAACTGAAACAGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTATATGACATCCCTTCAAACACATTTAATGAGTTGGATAACAATGTATTAGATAACACTACAAGAACATGA

Protein sequence

MNLMFSIAMPIPNLVHLYINVRRINVNVQRFEETSIQSVDPSLGVESNQCLDLDPQIVGTPCDDEDMVTNNTYKEFRTETDDEFEELDFENSVYDIPSNTFNELDNNVLDNTTRT

Homology

[Close]

BLAST of Tan0016016 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.5e-15
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVRRINVNVQRFEETSIQSVDPSLGVESNQCLDLDPQIVGT 60
           MN MFSIA+P PN+VHLY+ V  ++  +         +V+P       + +D++P+    
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAIN-------LNVEPRY---VEEYVDVEPESDAP 102

Query: 61  P-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVYDIPSNTFNELDNNVLD 111
           P C +E+MV  N Y EFRTETDDEFEE+DF+   Y++PSNTF +LD N +D
Sbjct: 103 PVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVD 143

[Close]

BLAST of Tan0016016 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.5e-15
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVRRINVNVQRFEETSIQSVDPSLGVESNQCLDLDPQIVGT 60
           MN MFSIA+P PN+VHLY+ V  ++  +         +V+P       + +D++P+    
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAIN-------LNVEPRY---VEEYVDVEPESDAP 102

Query: 61  P-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVYDIPSNTFNELDNNVLD 111
           P C +E+MV  N Y EFRTETDDEFEE+DF+   Y++PSNTF +LD N +D
Sbjct: 103 PVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVD 143

[Close]

BLAST of Tan0016016 vs. NCBI nr
Match: TYK01570.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 4.6e-15
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVRR----INVNVQ-RFEETSIQSVDPSLGVESNQCLDLDP 60
           MN MFS+A+P PN+VHLY+ V      IN+NV+ R+ E               + +D++P
Sbjct: 1   MNTMFSVALPFPNMVHLYVTVSMVDTVINLNVEPRYVE---------------EYVDVEP 60

Query: 61  QIVGTP-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVYDIPSNTFNELDNNVLD 111
           +    P C +E+MV  N Y EFRTETDDEFEE+DF+   Y++PSNTF +LD N +D
Sbjct: 61  ESDALPVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVD 101

[Close]

BLAST of Tan0016016 vs. NCBI nr
Match: TYK23115.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 7.8e-15
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVRRINVNVQRFEETSIQSVDPSLGVESNQCLDLDPQIVGT 60
           MN MFSIA+P PN+VHLY+ V  +++ +         +V+P       + +D+D +    
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAIN-------LNVEPKY---VEEYVDVDQESDAP 60

Query: 61  P-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVYDIPSNTFNELDNNVLDN 112
           P C +E+MV  N Y EFRTETDDEFEE+DF+   Y++PSNTF +LD N +D+
Sbjct: 61  PVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDD 102

[Close]

BLAST of Tan0016016 vs. NCBI nr
Match: TYK11154.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-14
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVRRINVNVQRFEETSIQSVDPSLGVESNQCLDLDPQIVGT 60
           MN MFSIA+P PN+VHLY+ V  +++ +    E               + +D+D ++   
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAINLNAEPKY----------VEEYVDVDLELDAP 60

Query: 61  P-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVYDIPSNTFNELDNNVLD 111
           P C +E+MV  N Y EFRTETDDEFEE+DF+   Y++PSNTF +LD + +D
Sbjct: 61  PVCHEEEMVATNEYTEFRTETDDEFEEIDFDGCEYEVPSNTFTDLDMDTVD 101

[Close]

BLAST of Tan0016016 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVRRINVNVQRFEETSIQSVDPSLGVESNQCLDLDPQIVGT 60
           MN MFSIA+P PN+VHLY+ V  ++  +         +V+P       + +D++P+    
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAIN-------LNVEPRY---VEEYVDVEPESDAP 102

Query: 61  P-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVYDIPSNTFNELDNNVLD 111
           P C +E+MV  N Y EFRTETDDEFEE+DF+   Y++PSNTF +LD N +D
Sbjct: 103 PVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVD 143

[Close]

BLAST of Tan0016016 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVRRINVNVQRFEETSIQSVDPSLGVESNQCLDLDPQIVGT 60
           MN MFSIA+P PN+VHLY+ V  ++  +         +V+P       + +D++P+    
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAIN-------LNVEPRY---VEEYVDVEPESDAP 102

Query: 61  P-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVYDIPSNTFNELDNNVLD 111
           P C +E+MV  N Y EFRTETDDEFEE+DF+   Y++PSNTF +LD N +D
Sbjct: 103 PVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVD 143

[Close]

BLAST of Tan0016016 vs. ExPASy TrEMBL
Match: A0A5D3BR52 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001490 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVRR----INVNVQ-RFEETSIQSVDPSLGVESNQCLDLDP 60
           MN MFS+A+P PN+VHLY+ V      IN+NV+ R+ E               + +D++P
Sbjct: 1   MNTMFSVALPFPNMVHLYVTVSMVDTVINLNVEPRYVE---------------EYVDVEP 60

Query: 61  QIVGTP-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVYDIPSNTFNELDNNVLD 111
           +    P C +E+MV  N Y EFRTETDDEFEE+DF+   Y++PSNTF +LD N +D
Sbjct: 61  ESDALPVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVD 101

[Close]

BLAST of Tan0016016 vs. ExPASy TrEMBL
Match: A0A5D3DHR2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001060 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.8e-15
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVRRINVNVQRFEETSIQSVDPSLGVESNQCLDLDPQIVGT 60
           MN MFSIA+P PN+VHLY+ V  +++ +         +V+P       + +D+D +    
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAIN-------LNVEPKY---VEEYVDVDQESDAP 60

Query: 61  P-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVYDIPSNTFNELDNNVLDN 112
           P C +E+MV  N Y EFRTETDDEFEE+DF+   Y++PSNTF +LD N +D+
Sbjct: 61  PVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDD 102

[Close]

BLAST of Tan0016016 vs. ExPASy TrEMBL
Match: A0A5D3CIZ8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00630 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 1   MNLMFSIAMPIPNLVHLYINVRRINVNVQRFEETSIQSVDPSLGVESNQCLDLDPQIVGT 60
           MN MFSIA+P PN+VHLY+ V  +++ +    E               + +D+D ++   
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAINLNAEPKY----------VEEYVDVDLELDAP 60

Query: 61  P-CDDEDMVTNNTYKEFRTETDDEFEELDFENSVYDIPSNTFNELDNNVLD 111
           P C +E+MV  N Y EFRTETDDEFEE+DF+   Y++PSNTF +LD + +D
Sbjct: 61  PVCHEEEMVATNEYTEFRTETDDEFEEIDFDGCEYEVPSNTFTDLDMDTVD 101

The following BLAST results are available for this feature:

BLAST of Tan0016016 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0016016 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034014.1	3.5e-15	45.05	uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]	[more]
TYJ95836.1	3.5e-15	45.05	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK01570.1	4.6e-15	45.69	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK23115.1	7.8e-15	44.64	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK11154.1	3.0e-14	43.24	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of Tan0016016 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BAB0	1.7e-15	45.05	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SS31	1.7e-15	45.05	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BR52	2.2e-15	45.69	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DHR2	3.8e-15	44.64	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CIZ8	1.4e-14	43.24	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of Tan0016016 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0016016.1	Tan0016016.1	mRNA