Tan0015900 (gene) Snake gourd v1

Overview


Name	Tan0015900
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	E3 ubiquitin-protein ligase RNF126-like
Location	LG01: 98255893 .. 98256552 (+)
RNA-Seq Expression	Tan0015900
Synteny	Tan0015900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCCAGTTCGACCACGCTCTGTCCTTTGGATATTCCATCAGCGGATACGGCAACGGCAGCGTGGCTTTCGACGAGCAACCGATGCAATTTGTGGAACTCCGATTGGGACATTCGAGTCGTCTGATCTCTCGATCTTCTCACCAAATCCTCCAACGAAGTCCCTCAACTCCAATCGCTACTGCTCTGTTTCCTTTGTCTCTGCGCGAGCTTGAAGACCCACCGTTTCTCTCCCACTTCTACGTCATTCATTTTCTAACTTCCTTTAACCTCCCAATCGCCGTTTCCGATGCAATCTTTGAGAAGATCGCCTTCTTCGCCCACCACTTGGCTGCCGGAAACCTCGATCGGAACTTCCACATCAACGTCGCTATCGATTTCATTCAAAATCTATGGGTGGACCTGGACCCAGAAGATTCTCCGGCAGTGACGAATAGGGCGCCGGCGTCGGCCATTGAGAGACTGAAGAAGCAGAAATTCGATGGGTTTGAGCTCGTAGAAGTGGGAGATGATTGCAGTGTTTGTTGCGATGAACTTAACGCTGAAAAGGAGGTGACAAGAATCCCCTGTGGTCATGTGTATCACAAATCCTGTATTCTCACTTGGCTTCAGATGAGCAATTCGTGTCCTTTGTGTAGAGCCAAATTAGAAGAATGA

mRNA sequence

ATGTCTTTCCAGTTCGACCACGCTCTGTCCTTTGGATATTCCATCAGCGGATACGGCAACGGCAGCGTGGCTTTCGACGAGCAACCGATGCAATTTGTGGAACTCCGATTGGGACATTCGAGTCGTCTGATCTCTCGATCTTCTCACCAAATCCTCCAACGAAGTCCCTCAACTCCAATCGCTACTGCTCTGTTTCCTTTGTCTCTGCGCGAGCTTGAAGACCCACCGTTTCTCTCCCACTTCTACGTCATTCATTTTCTAACTTCCTTTAACCTCCCAATCGCCGTTTCCGATGCAATCTTTGAGAAGATCGCCTTCTTCGCCCACCACTTGGCTGCCGGAAACCTCGATCGGAACTTCCACATCAACGTCGCTATCGATTTCATTCAAAATCTATGGGTGGACCTGGACCCAGAAGATTCTCCGGCAGTGACGAATAGGGCGCCGGCGTCGGCCATTGAGAGACTGAAGAAGCAGAAATTCGATGGGTTTGAGCTCGTAGAAGTGGGAGATGATTGCAGTGTTTGTTGCGATGAACTTAACGCTGAAAAGGAGGTGACAAGAATCCCCTGTGGTCATGTGTATCACAAATCCTGTATTCTCACTTGGCTTCAGATGAGCAATTCGTGTCCTTTGTGTAGAGCCAAATTAGAAGAATGA

Coding sequence (CDS)

ATGTCTTTCCAGTTCGACCACGCTCTGTCCTTTGGATATTCCATCAGCGGATACGGCAACGGCAGCGTGGCTTTCGACGAGCAACCGATGCAATTTGTGGAACTCCGATTGGGACATTCGAGTCGTCTGATCTCTCGATCTTCTCACCAAATCCTCCAACGAAGTCCCTCAACTCCAATCGCTACTGCTCTGTTTCCTTTGTCTCTGCGCGAGCTTGAAGACCCACCGTTTCTCTCCCACTTCTACGTCATTCATTTTCTAACTTCCTTTAACCTCCCAATCGCCGTTTCCGATGCAATCTTTGAGAAGATCGCCTTCTTCGCCCACCACTTGGCTGCCGGAAACCTCGATCGGAACTTCCACATCAACGTCGCTATCGATTTCATTCAAAATCTATGGGTGGACCTGGACCCAGAAGATTCTCCGGCAGTGACGAATAGGGCGCCGGCGTCGGCCATTGAGAGACTGAAGAAGCAGAAATTCGATGGGTTTGAGCTCGTAGAAGTGGGAGATGATTGCAGTGTTTGTTGCGATGAACTTAACGCTGAAAAGGAGGTGACAAGAATCCCCTGTGGTCATGTGTATCACAAATCCTGTATTCTCACTTGGCTTCAGATGAGCAATTCGTGTCCTTTGTGTAGAGCCAAATTAGAAGAATGA

Protein sequence

MSFQFDHALSFGYSISGYGNGSVAFDEQPMQFVELRLGHSSRLISRSSHQILQRSPSTPIATALFPLSLRELEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDPEDSPAVTNRAPASAIERLKKQKFDGFELVEVGDDCSVCCDELNAEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKLEE

Homology

[Close]

BLAST of Tan0015900 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-11
Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 148 APASAIERLKKQKFDGFELVEVGDDCSVCCDELNAEKEVTRIPCGHVYHKSCILTWLQMS 207
           AP SAI+ L   K     L     +C VC DE     E  ++PC H+YH  CI+ WL   
Sbjct: 165 APRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQH 224

Query: 208 NSCPLCRAKL 218
           NSCP+CR +L
Sbjct: 225 NSCPVCRQEL 234

[Close]

BLAST of Tan0015900 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.9e-11
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 145 TNRAPASAIERLKKQKFDGFELVEVGDDCSVCCDELNAEKEVTRIPCGHVYHKSCILTWL 204
           T  A  SAIE L         L    + C+VC D+     E  ++PC H+YHK C+L WL
Sbjct: 196 TPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWL 255

Query: 205 QMSNSCPLCRAKL 218
           ++ NSCP+CR +L
Sbjct: 256 ELHNSCPVCRHEL 268

[Close]

BLAST of Tan0015900 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.9e-11
Identity = 29/70 (41.43%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 148 APASAIERLKKQKFDGFELVEVGDDCSVCCDELNAEKEVTRIPCGHVYHKSCILTWLQMS 207
           AP S+I+ L   K     L      C VC DE   + E  ++PC H+YH  CI+ WL   
Sbjct: 161 APKSSIDALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQH 220

Query: 208 NSCPLCRAKL 218
           NSCP+CR +L
Sbjct: 221 NSCPVCRKEL 230

[Close]

BLAST of Tan0015900 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 145 TNRAPASAIERLKKQKFDGFELVEVGDDCSVCCDELNAEKEVTRIPCGHVYHKSCILTWL 204
           T  A  SAI+ L   K     L    + C+VC DE     +V ++PC HV+H+ C+L WL
Sbjct: 188 TPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWL 247

Query: 205 QMSNSCPLCRAKL 218
           ++ NSCP+CR +L
Sbjct: 248 ELHNSCPVCRFEL 260

[Close]

BLAST of Tan0015900 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-10
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 165 ELVEVGDDCSVCCDELNAEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKL 218
           E V++G +C VC ++   E+EV ++PC H +H SCI+ WL++ ++CP+CR  L
Sbjct: 220 EQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272

[Close]

BLAST of Tan0015900 vs. NCBI nr
Match: XP_023533113.1 (RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.1 bits (710), Expect = 6.5e-71
Identity = 141/223 (63.23%), Postives = 167/223 (74.89%), Query Frame = 0


Query: 1   MSFQFDHALSFGYSISGYGNGSVAFDEQPMQFVELRLGHSSRLISRSSHQILQRSPSTPI 60
           MS  F  +LSF  S      G++A  EQPMQFVELRLGHSS LISRSS QILQ++PSTP+
Sbjct: 1   MSLTFGDSLSFQCSFRTNTTGNLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60

Query: 61  ATALFPLSLRELEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNF 120
             ALFP  LR+L DPPFLS  +V+ FL+SF +PIAV + IF +I+ FA HLAAGN+D NF
Sbjct: 61  GDALFPFILRDLLDPPFLSKSHVLRFLSSFTIPIAVCNIIFAEISSFALHLAAGNVDLNF 120

Query: 121 HINVAIDFIQNLWVDLDP----EDSPAVTNRAPASAIERLKKQKFDGFELVEVGDDCSVC 180
           HI V +D I+ +WVDLDP    E SPA  N APASAIERL++QKFDG    E   DCSVC
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPAAMNGAPASAIERLQRQKFDGLREEEKEGDCSVC 180

Query: 181 CDELNAEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKLEE 220
           C+ L  E+EV+RIPCGHVYHK CIL WL+MSNSCPLCR +LE+
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKCCILKWLEMSNSCPLCRTQLEQ 223

[Close]

BLAST of Tan0015900 vs. NCBI nr
Match: XP_022947933.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ubiquitin-protein ligase RNF126-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.7 bits (709), Expect = 8.5e-71
Identity = 139/223 (62.33%), Postives = 169/223 (75.78%), Query Frame = 0


Query: 1   MSFQFDHALSFGYSISGYGNGSVAFDEQPMQFVELRLGHSSRLISRSSHQILQRSPSTPI 60
           MS  F   LSF  SI    NG+VA D+QPMQ +ELRLG+S+ LISRSS QILQ++P+TP+
Sbjct: 1   MSLTFHDYLSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPM 60

Query: 61  ATALFPLSLRELEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNF 120
             ALFP  LR+L+ PPFLS+ YV+ FL+SF++PIA  D I+E+I+ FA  LAAGN+D NF
Sbjct: 61  GDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNF 120

Query: 121 HINVAIDFIQNLWVDLDP----EDSPAVTNRAPASAIERLKKQKFDGFELVEVGDDCSVC 180
           HI V +D I+ +WVDLDP    E SPA  N APASAIERL++Q+FDG    E   DCSVC
Sbjct: 121 HIVVEVDVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVC 180

Query: 181 CDELNAEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKLEE 220
           C+ L  E+EV+RIPCGHVYHK CIL WLQMSNSCPLCR KLE+
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLEQ 223

[Close]

BLAST of Tan0015900 vs. NCBI nr
Match: KAG6605221.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-70
Identity = 139/223 (62.33%), Postives = 169/223 (75.78%), Query Frame = 0


Query: 1   MSFQFDHALSFGYSISGYGNGSVAFDEQPMQFVELRLGHSSRLISRSSHQILQRSPSTPI 60
           MS  F   LSF  SI    NG+VA D+QPMQ +ELRLG+S+ LISRSS QILQ++P+TP+
Sbjct: 1   MSLTFHDYLSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPM 60

Query: 61  ATALFPLSLRELEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNF 120
             ALFP  LR+L+ PPFLS+ YV+ FL+SF++PIA  D I+E+I+ FA  LAAGN+D NF
Sbjct: 61  GDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNF 120

Query: 121 HINVAIDFIQNLWVDLDP----EDSPAVTNRAPASAIERLKKQKFDGFELVEVGDDCSVC 180
           HI V +D I+ +WVDLDP    E SPA  N APASAIERL++Q+FDG    E   DCSVC
Sbjct: 121 HIVVEVDVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLRDEEEEGDCSVC 180

Query: 181 CDELNAEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKLEE 220
           C+ L  E+EV+RIPCGHVYHK CIL WLQMSNSCPLCR KLE+
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLEQ 223

[Close]

BLAST of Tan0015900 vs. NCBI nr
Match: XP_023006826.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima])

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-70
Identity = 140/223 (62.78%), Postives = 167/223 (74.89%), Query Frame = 0


Query: 1   MSFQFDHALSFGYSISGYGNGSVAFDEQPMQFVELRLGHSSRLISRSSHQILQRSPSTPI 60
           MS  F   LSF  SI    NG+VA  +QP+Q +ELRLGHS+ LISRSS QILQ++PSTPI
Sbjct: 1   MSLTFHDYLSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPI 60

Query: 61  ATALFPLSLRELEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNF 120
             ALFP  LR+L+ PPFLS+ YV+ FL+SF++PIA  D I+E+I+ FA  LAAGN+D NF
Sbjct: 61  GDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNF 120

Query: 121 HINVAIDFIQNLWVDLDP----EDSPAVTNRAPASAIERLKKQKFDGFELVEVGDDCSVC 180
           HI V +D  + +WVDLDP    E SPA  N APASAIERL++QKFDG    E   DCSVC
Sbjct: 121 HIVVEVDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 180

Query: 181 CDELNAEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKLEE 220
           C+ L  E+EV+RIPCGHVYHK CIL WLQMSNSCPLCR KLE+
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKFCILKWLQMSNSCPLCRTKLEQ 223

[Close]

BLAST of Tan0015900 vs. NCBI nr
Match: XP_023006824.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 276.6 bits (706), Expect = 1.9e-70
Identity = 136/223 (60.99%), Postives = 167/223 (74.89%), Query Frame = 0


Query: 1   MSFQFDHALSFGYSISGYGNGSVAFDEQPMQFVELRLGHSSRLISRSSHQILQRSPSTPI 60
           MS  F  +LSF +SI     G++A  E PMQFVELRLGHSS LISRSS QILQ+SPSTP+
Sbjct: 1   MSLTFGDSLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPL 60

Query: 61  ATALFPLSLRELEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNF 120
             +LFP  LR+LE PPFL +++V+HFL+SF++P+A  D I+++I+ FA  L A N+D NF
Sbjct: 61  GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNF 120

Query: 121 HINVAIDFIQNLWVDLDP----EDSPAVTNRAPASAIERLKKQKFDGFELVEVGDDCSVC 180
           HI V +D I+ +WVDLDP    E SP   N APASAIERL++QKFDG    E   DCSVC
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 180

Query: 181 CDELNAEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKLEE 220
           C+ L  E+EV+RIPCGHVYHK CIL WLQ+SNSCPLCR KLE+
Sbjct: 181 CEALRGEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLEQ 223

[Close]

BLAST of Tan0015900 vs. ExPASy TrEMBL
Match: A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 4.1e-71
Identity = 139/223 (62.33%), Postives = 169/223 (75.78%), Query Frame = 0


Query: 1   MSFQFDHALSFGYSISGYGNGSVAFDEQPMQFVELRLGHSSRLISRSSHQILQRSPSTPI 60
           MS  F   LSF  SI    NG+VA D+QPMQ +ELRLG+S+ LISRSS QILQ++P+TP+
Sbjct: 1   MSLTFHDYLSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPM 60

Query: 61  ATALFPLSLRELEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNF 120
             ALFP  LR+L+ PPFLS+ YV+ FL+SF++PIA  D I+E+I+ FA  LAAGN+D NF
Sbjct: 61  GDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNF 120

Query: 121 HINVAIDFIQNLWVDLDP----EDSPAVTNRAPASAIERLKKQKFDGFELVEVGDDCSVC 180
           HI V +D I+ +WVDLDP    E SPA  N APASAIERL++Q+FDG    E   DCSVC
Sbjct: 121 HIVVEVDVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVC 180

Query: 181 CDELNAEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKLEE 220
           C+ L  E+EV+RIPCGHVYHK CIL WLQMSNSCPLCR KLE+
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLEQ 223

[Close]

BLAST of Tan0015900 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 5.4e-71
Identity = 140/223 (62.78%), Postives = 167/223 (74.89%), Query Frame = 0


Query: 1   MSFQFDHALSFGYSISGYGNGSVAFDEQPMQFVELRLGHSSRLISRSSHQILQRSPSTPI 60
           MS  F   LSF  SI    NG+VA  +QP+Q +ELRLGHS+ LISRSS QILQ++PSTPI
Sbjct: 1   MSLTFHDYLSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPI 60

Query: 61  ATALFPLSLRELEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNF 120
             ALFP  LR+L+ PPFLS+ YV+ FL+SF++PIA  D I+E+I+ FA  LAAGN+D NF
Sbjct: 61  GDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNF 120

Query: 121 HINVAIDFIQNLWVDLDP----EDSPAVTNRAPASAIERLKKQKFDGFELVEVGDDCSVC 180
           HI V +D  + +WVDLDP    E SPA  N APASAIERL++QKFDG    E   DCSVC
Sbjct: 121 HIVVEVDVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 180

Query: 181 CDELNAEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKLEE 220
           C+ L  E+EV+RIPCGHVYHK CIL WLQMSNSCPLCR KLE+
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKFCILKWLQMSNSCPLCRTKLEQ 223

[Close]

BLAST of Tan0015900 vs. ExPASy TrEMBL
Match: A0A6J1L387 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 9.2e-71
Identity = 136/223 (60.99%), Postives = 167/223 (74.89%), Query Frame = 0


Query: 1   MSFQFDHALSFGYSISGYGNGSVAFDEQPMQFVELRLGHSSRLISRSSHQILQRSPSTPI 60
           MS  F  +LSF +SI     G++A  E PMQFVELRLGHSS LISRSS QILQ+SPSTP+
Sbjct: 1   MSLTFGDSLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPL 60

Query: 61  ATALFPLSLRELEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNF 120
             +LFP  LR+LE PPFL +++V+HFL+SF++P+A  D I+++I+ FA  L A N+D NF
Sbjct: 61  GESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNF 120

Query: 121 HINVAIDFIQNLWVDLDP----EDSPAVTNRAPASAIERLKKQKFDGFELVEVGDDCSVC 180
           HI V +D I+ +WVDLDP    E SP   N APASAIERL++QKFDG    E   DCSVC
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVC 180

Query: 181 CDELNAEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKLEE 220
           C+ L  E+EV+RIPCGHVYHK CIL WLQ+SNSCPLCR KLE+
Sbjct: 181 CEALRGEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLEQ 223

[Close]

BLAST of Tan0015900 vs. ExPASy TrEMBL
Match: A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.0e-69
Identity = 140/223 (62.78%), Postives = 167/223 (74.89%), Query Frame = 0


Query: 1   MSFQFDHALSFGYSISGYGNGSVAFDEQPMQFVELRLGHSSRLISRSSHQILQRSPSTPI 60
           MS  F  +LSF  S      G++A  EQPMQFVELRLGHSS LISRSS QILQ++PSTP+
Sbjct: 1   MSLTFGDSLSFQCSFRTNSTGTLASHEQPMQFVELRLGHSSHLISRSSRQILQQTPSTPM 60

Query: 61  ATALFPLSLRELEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNF 120
             ALFP  LR+L  PPFLS  +V+ FL+SF++PIAV + IF +I+ FA HLAAGN+D NF
Sbjct: 61  GDALFPFILRDLLHPPFLSKSHVLRFLSSFSIPIAVCNIIFVEISSFALHLAAGNVDLNF 120

Query: 121 HINVAIDFIQNLWVDLDP----EDSPAVTNRAPASAIERLKKQKFDGFELVEVGDDCSVC 180
           HI V +D I+ +WVDLDP    E SP   N APASAIERL++Q+FDG    E G +CSVC
Sbjct: 121 HIVVDVDAIEMIWVDLDPFLIEEYSPPAMNGAPASAIERLQRQEFDGLREEEEG-ECSVC 180

Query: 181 CDELNAEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKLEE 220
           C+ L  E+EV+RIPCGHVYHK CIL WLQMSNSCPLCR KLE+
Sbjct: 181 CEALKGEEEVSRIPCGHVYHKCCILRWLQMSNSCPLCRTKLEQ 222

[Close]

BLAST of Tan0015900 vs. ExPASy TrEMBL
Match: A0A6J1ES83 (uncharacterized protein LOC111435504 OS=Cucurbita moschata OX=3662 GN=LOC111435504 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.0e-61
Identity = 124/218 (56.88%), Postives = 159/218 (72.94%), Query Frame = 0


Query: 7   HALSFGYSISGYGNGS--VAFDEQPMQFVELRLGHSSRLISRSSHQILQRSPSTPIATAL 66
           + LS  Y I  +   +  VA D QPMQ+ ELRL +S++ +SRSS+Q+LQ++P T I+ AL
Sbjct: 70  NTLSLQYCIHTHPRNTTGVATDAQPMQYAELRLAYSNQFVSRSSNQLLQQTPQTLISDAL 129

Query: 67  FPLSLRELEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINV 126
            PL LR+L+ PPFLSHF V+ FL++FN+  A S AIF+ IA FA  LAAG+LDRNFHI V
Sbjct: 130 LPLFLRDLQHPPFLSHFLVLQFLSTFNISTASSHAIFDDIATFALELAAGDLDRNFHIIV 189

Query: 127 AIDFIQNLWVDLDPE---DSPAVTNRAPASAIERLKKQKFDGFELVEVGDDCSVCCDELN 186
            +D +Q +WVDLD +   + P     APAS +ERL +++FDGF   E   DCSVCCDEL 
Sbjct: 190 YLDLVQTIWVDLDLDLDLEMPPKQEPAPASVMERLMREEFDGFR-PEEARDCSVCCDELG 249

Query: 187 AEKEVTRIPCGHVYHKSCILTWLQMSNSCPLCRAKLEE 220
            E EV R+PCGHV+HKSCIL WLQ++NSCPLCRAKLE+
Sbjct: 250 GETEVRRLPCGHVFHKSCILKWLQLTNSCPLCRAKLEQ 286

[Close]

BLAST of Tan0015900 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A )

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-12
Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 148 APASAIERLKKQKFDGFELVEVGDDCSVCCDELNAEKEVTRIPCGHVYHKSCILTWLQMS 207
           AP SAI+ L   K     L     +C VC DE     E  ++PC H+YH  CI+ WL   
Sbjct: 165 APRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQH 224

Query: 208 NSCPLCRAKL 218
           NSCP+CR +L
Sbjct: 225 NSCPVCRQEL 234

[Close]

BLAST of Tan0015900 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A )

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-12
Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 148 APASAIERLKKQKFDGFELVEVGDDCSVCCDELNAEKEVTRIPCGHVYHKSCILTWLQMS 207
           AP SAI+ L   K     L     +C VC DE     E  ++PC H+YH  CI+ WL   
Sbjct: 165 APRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQH 224

Query: 208 NSCPLCRAKL 218
           NSCP+CR +L
Sbjct: 225 NSCPVCRQEL 234

[Close]

BLAST of Tan0015900 vs. TAIR 10
Match: AT2G40830.3 (RING-H2 finger C1A )

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-12
Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 148 APASAIERLKKQKFDGFELVEVGDDCSVCCDELNAEKEVTRIPCGHVYHKSCILTWLQMS 207
           AP SAI+ L   K     L     +C VC DE     E  ++PC H+YH  CI+ WL   
Sbjct: 165 APRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQH 224

Query: 208 NSCPLCRAKL 218
           NSCP+CR +L
Sbjct: 225 NSCPVCRQEL 234

[Close]

BLAST of Tan0015900 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-12
Identity = 29/70 (41.43%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 148 APASAIERLKKQKFDGFELVEVGDDCSVCCDELNAEKEVTRIPCGHVYHKSCILTWLQMS 207
           AP S+I+ L   K     L      C VC DE   + E  ++PC H+YH  CI+ WL   
Sbjct: 161 APKSSIDALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQH 220

Query: 208 NSCPLCRAKL 218
           NSCP+CR +L
Sbjct: 221 NSCPVCRKEL 230

[Close]

BLAST of Tan0015900 vs. TAIR 10
Match: AT3G56580.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-12
Identity = 29/70 (41.43%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 148 APASAIERLKKQKFDGFELVEVGDDCSVCCDELNAEKEVTRIPCGHVYHKSCILTWLQMS 207
           AP S+I+ L   K     L      C VC DE   + E  ++PC H+YH  CI+ WL   
Sbjct: 161 APKSSIDALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQH 220

Query: 208 NSCPLCRAKL 218
           NSCP+CR +L
Sbjct: 221 NSCPVCRKEL 230

The following BLAST results are available for this feature:

BLAST of Tan0015900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22197	4.6e-11	42.86	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
P0CH30	7.9e-11	41.10	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q94AK4	7.9e-11	41.43	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]
Q8LPN7	1.0e-10	41.10	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9Y4L5	5.1e-10	43.40	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2	[more]

BLAST of Tan0015900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533113.1	6.5e-71	63.23	RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947933.1	8.5e-71	62.33	E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ...	[more]
KAG6605221.1	1.1e-70	62.33	E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023006826.1	1.1e-70	62.78	E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima]	[more]
XP_023006824.1	1.9e-70	60.99	RING-H2 finger protein ATL16-like [Cucurbita maxima]	[more]

BLAST of Tan0015900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7Z5	4.1e-71	62.33	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KYV1	5.4e-71	62.78	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499...	[more]
A0A6J1L387	9.2e-71	60.99	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE...	[more]
A0A6J1G809	1.0e-69	62.78	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1ES83	1.0e-61	56.88	uncharacterized protein LOC111435504 OS=Cucurbita moschata OX=3662 GN=LOC1114355...	[more]

BLAST of Tan0015900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40830.2	3.3e-12	42.86	RING-H2 finger C1A	[more]
AT2G40830.1	3.3e-12	42.86	RING-H2 finger C1A	[more]
AT2G40830.3	3.3e-12	42.86	RING-H2 finger C1A	[more]
AT3G56580.2	5.6e-12	41.43	RING/U-box superfamily protein	[more]
AT3G56580.1	5.6e-12	41.43	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 173..213 e-value: 1.3E-7 score: 41.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 171..214 e-value: 2.4E-13 score: 50.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 173..214 score: 13.28594
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 137..218 e-value: 6.9E-20 score: 72.5
None	No IPR available	PANTHER	PTHR45931:SF9	E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKE	coord: 92..218
None	No IPR available	PANTHER	PTHR45931	SI:CH211-59O9.10	coord: 92..218
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 172..214 e-value: 1.31729E-17 score: 71.5641
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 166..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015900.1	Tan0015900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity