Tan0015876 (gene) Snake gourd v1

Overview


Name	Tan0015876
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG05: 65656933 .. 65657298 (+)
RNA-Seq Expression	Tan0015876
Synteny	Tan0015876

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATGAAGATTATGGGCACCCATATTTTCAGTGGGATTATCTCGGACTCCAATAAGCCAAAGCAATTTCCAGCGATGATAGCTTGTAGCTTTGTTCGTGATCATTATTGGGCATCTCCTTTTCCTAGGCGCTATGGCAAAGCAAGCAAAGGGGATCAGAACAGCAACGACGACGGTGGTGATGATCAGAGATCAAAGGCAAACACAACAAGAGCTCCGTCCACGGCCGAGGAGTTCAATAGGGTGGAGGCTGAAAAGCACTTGAAGGAGCCGCCTGCTCAGAGCGACCGCAAACAATCTGAAACCTCGCAAAATAATGATCAGGACTTGGACCAAGGGCCTGGTTACCGCCCTTGTAGTTAG

mRNA sequence

ATGAATATGAAGATTATGGGCACCCATATTTTCAGTGGGATTATCTCGGACTCCAATAAGCCAAAGCAATTTCCAGCGATGATAGCTTGTAGCTTTGTTCGTGATCATTATTGGGCATCTCCTTTTCCTAGGCGCTATGGCAAAGCAAGCAAAGGGGATCAGAACAGCAACGACGACGGTGGTGATGATCAGAGATCAAAGGCAAACACAACAAGAGCTCCGTCCACGGCCGAGGAGTTCAATAGGGTGGAGGCTGAAAAGCACTTGAAGGAGCCGCCTGCTCAGAGCGACCGCAAACAATCTGAAACCTCGCAAAATAATGATCAGGACTTGGACCAAGGGCCTGGTTACCGCCCTTGTAGTTAG

Coding sequence (CDS)

ATGAATATGAAGATTATGGGCACCCATATTTTCAGTGGGATTATCTCGGACTCCAATAAGCCAAAGCAATTTCCAGCGATGATAGCTTGTAGCTTTGTTCGTGATCATTATTGGGCATCTCCTTTTCCTAGGCGCTATGGCAAAGCAAGCAAAGGGGATCAGAACAGCAACGACGACGGTGGTGATGATCAGAGATCAAAGGCAAACACAACAAGAGCTCCGTCCACGGCCGAGGAGTTCAATAGGGTGGAGGCTGAAAAGCACTTGAAGGAGCCGCCTGCTCAGAGCGACCGCAAACAATCTGAAACCTCGCAAAATAATGATCAGGACTTGGACCAAGGGCCTGGTTACCGCCCTTGTAGTTAG

Protein sequence

MNMKIMGTHIFSGIISDSNKPKQFPAMIACSFVRDHYWASPFPRRYGKASKGDQNSNDDGGDDQRSKANTTRAPSTAEEFNRVEAEKHLKEPPAQSDRKQSETSQNNDQDLDQGPGYRPCS

Homology

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BLAST of Tan0015876 vs. NCBI nr
Match: KAG6596946.1 (hypothetical protein SDJN03_10126, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 5.9e-13
Identity = 54/99 (54.55%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 27  MIACSFVRDHYWASPFPRRYGK--ASKGDQNSNDDGGDDQRSKANTTRAPSTAEEFNRVE 86
           ++ACS V+ H W S   RRY K    + D + + + G D RS  NT RAPS AEEFNR+ 
Sbjct: 21  LLACSTVKGH-WPSLLARRYDKPRTDEKDHHRSAEKGTDHRS--NTDRAPSMAEEFNRIA 80

Query: 87  AEKHLKEPPAQSDRKQSETSQN--NDQDLDQGPGYRPCS 122
            EKHLKE P +S  KQSETSQ   +DQ+LD GP YRPCS
Sbjct: 81  DEKHLKEAPGRSSDKQSETSQKTASDQNLDDGPNYRPCS 116

The following BLAST results are available for this feature:

BLAST of Tan0015876 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0015876 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596946.1	5.9e-13	54.55	hypothetical protein SDJN03_10126, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0015876 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Tan0015876 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015876.1	Tan0015876.1	mRNA