Tan0015843 (gene) Snake gourd v1

Overview


Name	Tan0015843
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DUF4219 domain-containing protein
Location	LG06: 16443576 .. 16443890 (+)
RNA-Seq Expression	Tan0015843
Synteny	Tan0015843

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTAACAACATGGTCCCGTTCCAAGTCCCAGTGCTCAACAAGAGCAACTACGATAATTGGAGCATCAAGATGAAGGCTCTCCTTGGATCACAAGATGTGTGGGAGATAGTAGAGAAAGGGCACTCTGAGCCGGAGAATGATGGTAGTCTTTCTCAAATACAAAGGGATAGTTTGAGAGACTCAAGAAAGAGAGACAAGAAGGCTCTCTATCTAATCTATCAAGGATTAGATGACGATGCTTTTGAGAAGATTTCAGAAGCAAAGACGGCGAAAGAAGCATGGGAGAAGCTTCAAATATCGTACAAGTGA

mRNA sequence

ATGGCAAGTAACAACATGGTCCCGTTCCAAGTCCCAGTGCTCAACAAGAGCAACTACGATAATTGGAGCATCAAGATGAAGGCTCTCCTTGGATCACAAGATGTGTGGGAGATAGTAGAGAAAGGGCACTCTGAGCCGGAGAATGATGGTAGTCTTTCTCAAATACAAAGGGATAGTTTGAGAGACTCAAGAAAGAGAGACAAGAAGGCTCTCTATCTAATCTATCAAGGATTAGATGACGATGCTTTTGAGAAGATTTCAGAAGCAAAGACGGCGAAAGAAGCATGGGAGAAGCTTCAAATATCGTACAAGTGA

Coding sequence (CDS)

ATGGCAAGTAACAACATGGTCCCGTTCCAAGTCCCAGTGCTCAACAAGAGCAACTACGATAATTGGAGCATCAAGATGAAGGCTCTCCTTGGATCACAAGATGTGTGGGAGATAGTAGAGAAAGGGCACTCTGAGCCGGAGAATGATGGTAGTCTTTCTCAAATACAAAGGGATAGTTTGAGAGACTCAAGAAAGAGAGACAAGAAGGCTCTCTATCTAATCTATCAAGGATTAGATGACGATGCTTTTGAGAAGATTTCAGAAGCAAAGACGGCGAAAGAAGCATGGGAGAAGCTTCAAATATCGTACAAGTGA

Protein sequence

MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK

Homology

[Close]

BLAST of Tan0015843 vs. NCBI nr
Match: XP_028556025.1 (uncharacterized protein LOC110109975 [Dendrobium catenatum])

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-41
Identity = 84/104 (80.77%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 1   MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSL 60
           MASN M+PFQVP LN SNYDNWSIKMKALLG+QDVWE++EKG++EP+++ SLSQ Q+DSL
Sbjct: 1   MASNGMIPFQVPTLNNSNYDNWSIKMKALLGAQDVWEMIEKGYNEPQDESSLSQAQKDSL 60

Query: 61  RDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK 105
           RDSRKRDKKALYLI+QGLDDD+FEKIS+AK+AKEAWEKLQ SYK
Sbjct: 61  RDSRKRDKKALYLIFQGLDDDSFEKISDAKSAKEAWEKLQTSYK 104

[Close]

BLAST of Tan0015843 vs. NCBI nr
Match: XP_020688719.2 (uncharacterized protein LOC110104092 [Dendrobium catenatum])

HSP 1 Score: 177.2 bits (448), Expect = 7.5e-41
Identity = 82/104 (78.85%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSL 60
           MASN M+PFQVP LN SNYDNWSIKMKALLG+QDVWE++EKG+ EP+++ SLSQ Q+DSL
Sbjct: 1   MASNGMIPFQVPTLNNSNYDNWSIKMKALLGAQDVWEMIEKGYKEPQDESSLSQAQKDSL 60

Query: 61  RDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK 105
           RDSRKRDKKALYLI+QGLDDD+FEK+S+ K+AKEAWEKLQ SYK
Sbjct: 61  RDSRKRDKKALYLIFQGLDDDSFEKLSDVKSAKEAWEKLQTSYK 104

[Close]

BLAST of Tan0015843 vs. NCBI nr
Match: PKU71906.1 (hypothetical protein MA16_Dca021744 [Dendrobium catenatum])

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40
Identity = 83/104 (79.81%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSL 60
           MASN M+PFQVP LN SNYDNWSIKMKALLG QDVWE++EKG+ EP+++ SLSQ Q+DSL
Sbjct: 1   MASNGMIPFQVPTLNNSNYDNWSIKMKALLGVQDVWEMIEKGYKEPQDESSLSQAQKDSL 60

Query: 61  RDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK 105
           RDSRKRDKKALYLI+QGLDDD+FEKI +AK+AKEAWEKLQ SYK
Sbjct: 61  RDSRKRDKKALYLIFQGLDDDSFEKIFDAKSAKEAWEKLQTSYK 104

[Close]

BLAST of Tan0015843 vs. NCBI nr
Match: AAG60117.1 (copia-type polyprotein, putative [Arabidopsis thaliana])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSL 60
           MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D L
Sbjct: 1   MASNN-VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 60

Query: 61  RDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK 105
           RDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+ SYK
Sbjct: 61  RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYK 103

[Close]

BLAST of Tan0015843 vs. NCBI nr
Match: CAB75469.1 (copia-type reverse transcriptase-like protein [Arabidopsis thaliana])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSL 60
           MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D L
Sbjct: 1   MASNN-VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 60

Query: 61  RDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK 105
           RDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+ SYK
Sbjct: 61  RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYK 103

[Close]

BLAST of Tan0015843 vs. ExPASy TrEMBL
Match: A0A2I0W8B3 (DUF4219 domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca021744 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.0e-41
Identity = 83/104 (79.81%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSL 60
           MASN M+PFQVP LN SNYDNWSIKMKALLG QDVWE++EKG+ EP+++ SLSQ Q+DSL
Sbjct: 1   MASNGMIPFQVPTLNNSNYDNWSIKMKALLGVQDVWEMIEKGYKEPQDESSLSQAQKDSL 60

Query: 61  RDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK 105
           RDSRKRDKKALYLI+QGLDDD+FEKI +AK+AKEAWEKLQ SYK
Sbjct: 61  RDSRKRDKKALYLIFQGLDDDSFEKIFDAKSAKEAWEKLQTSYK 104

[Close]

BLAST of Tan0015843 vs. ExPASy TrEMBL
Match: Q9C536 (Copia-type polyprotein, putative OS=Arabidopsis thaliana OX=3702 GN=T18I24.5 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.4e-38
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSL 60
           MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D L
Sbjct: 1   MASNN-VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 60

Query: 61  RDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK 105
           RDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+ SYK
Sbjct: 61  RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYK 103

[Close]

BLAST of Tan0015843 vs. ExPASy TrEMBL
Match: Q9M2D1 (Copia-type polyprotein OS=Arabidopsis thaliana OX=3702 GN=T20K12.230 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.4e-38
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSL 60
           MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D L
Sbjct: 1   MASNN-VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 60

Query: 61  RDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK 105
           RDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+ SYK
Sbjct: 61  RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYK 103

[Close]

BLAST of Tan0015843 vs. ExPASy TrEMBL
Match: Q9SXB2 (T28P6.8 protein OS=Arabidopsis thaliana OX=3702 GN=T28P6.8 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.4e-38
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSL 60
           MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D L
Sbjct: 1   MASNN-VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 60

Query: 61  RDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK 105
           RDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+ SYK
Sbjct: 61  RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYK 103

[Close]

BLAST of Tan0015843 vs. ExPASy TrEMBL
Match: Q9C739 (Copia-type polyprotein, putative OS=Arabidopsis thaliana OX=3702 GN=F11I4_21 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.4e-38
Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSL 60
           MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D L
Sbjct: 1   MASNN-VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 60

Query: 61  RDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQISYK 105
           RDSRKRDKKAL LIYQGLD+D FEK+ EA +AKEAWEKL+ SYK
Sbjct: 61  RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYK 103

[Close]

BLAST of Tan0015843 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 148.7 bits (374), Expect = 2.6e-36
Identity = 73/94 (77.66%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MASNNMVPFQVPVLNKSNYDNWSIKMKALLGSQDVWEIVEKGHSEPENDGSLSQIQRDSL 60
          MASNN VPFQVPVL KSNYDNWS++MKA+LG+ DVWEIVEKG  EPEN+GSLSQ Q+D L
Sbjct: 1  MASNN-VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 60

Query: 61 RDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKE 95
          RDSRKRDKKAL LIYQGLD+D FEK+ EA +AK+
Sbjct: 61 RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKD 93

The following BLAST results are available for this feature:

BLAST of Tan0015843 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0015843 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_028556025.1	1.2e-41	80.77	uncharacterized protein LOC110109975 [Dendrobium catenatum]	[more]
XP_020688719.2	7.5e-41	78.85	uncharacterized protein LOC110104092 [Dendrobium catenatum]	[more]
PKU71906.1	1.7e-40	79.81	hypothetical protein MA16_Dca021744 [Dendrobium catenatum]	[more]
AAG60117.1	1.3e-37	78.85	copia-type polyprotein, putative [Arabidopsis thaliana]	[more]
CAB75469.1	1.3e-37	78.85	copia-type reverse transcriptase-like protein [Arabidopsis thaliana]	[more]

BLAST of Tan0015843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I0W8B3	8.0e-41	79.81	DUF4219 domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca0...	[more]
Q9C536	6.4e-38	78.85	Copia-type polyprotein, putative OS=Arabidopsis thaliana OX=3702 GN=T18I24.5 PE=...	[more]
Q9M2D1	6.4e-38	78.85	Copia-type polyprotein OS=Arabidopsis thaliana OX=3702 GN=T20K12.230 PE=4 SV=1	[more]
Q9SXB2	6.4e-38	78.85	T28P6.8 protein OS=Arabidopsis thaliana OX=3702 GN=T28P6.8 PE=4 SV=1	[more]
Q9C739	6.4e-38	78.85	Copia-type polyprotein, putative OS=Arabidopsis thaliana OX=3702 GN=F11I4_21 PE=...	[more]

BLAST of Tan0015843 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48720.1	2.6e-36	77.66	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 14..40 e-value: 2.3E-11 score: 43.1
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 64..103 e-value: 4.7E-8 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..64
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 13..104
None	No IPR available	PANTHER	PTHR37610:SF17	ZINC FINGER, CCHC-TYPE, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 13..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015843.1	Tan0015843.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding