Tan0015805 (gene) Snake gourd v1

Overview


Name	Tan0015805
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ENDO3c domain-containing protein
Location	LG05: 1232822 .. 1234814 (-)
RNA-Seq Expression	Tan0015805
Synteny	Tan0015805

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACAGGAAATTGACTGGAATAGTTTGAGGGGAAAATGGGACAGCATGAGGAGAGTCTATTCTGGTTGTGAGCCAAGAAGTAGCGATTACATGGATTCTGTAGATTGGGAAGCAGTTCGTTCTGCAGAACCTACCACGATTGCAGATGCCATCAAGGAACGTGGCCAGCATAACATCATAGCAGGAAGAATCAAGGTTTAAGAAACTAAAGTGAAATTAAAATAATAGTGTGGTATAAACAAAAGGCTTCAGGCTAACATGTCTGACTTGCCTCATCTATCCTTTTTCCTACAGGAATTTCTTCATCGAATAGCTAGAATACATGGTCGCATTGACCTTGAATGGCTTAGAAAGGCTCCTCCAAATGATGTTAAGTAAGTCTATAATACAAGACGGCTTAAATTAGAGATAAATTATAAGTTTAGTTTATGAATTTAAAGTCTATCTAATAGGTTTTAAACTTTTAAAAAGATGTGATAAGTTTTTAAACTTTCAATTTTGTGTGTAATGATTTTATGAATATCTAATAGATCTTTAAATTTTAATTATATATCTACTACGTCTACATACGAATTTATTAAATATAAAGTTGAATTATGTATTTAATTTATAAATTAATTTTTAAAAAACTAAAAATAAAAAACGTCAATTTTTATGTTTTTGAATTGGTAGTTAATCTGAATTGTGCTTTATGCTTTTAGATTTATTAAGTTCAATAAATATTTATTTCACAAATGTATTTTCAAACAATGTTTATAGATTCGGTGATCTAAATAGTAAAAATTATAAAAATAATATTTTTATGTTTTATCAGATCTCATGAAATTTTAAAATACAAAATTATATTAAAAAGATAAAATATTAATAAATATAGTATTTCAAGTTATAAACTCAATTTATTTTTGTTAAATAAAAATATGTATAATATAATATATCATAAATTATATAATATTGTAAAATAGTAATTATACAAAATTTATTAAAAAACATATTCATAAATTAATTAGTAATTACTTATATTCAATCTAATATTTAGTATGCCAATTACCATTAGTTTTATAGATTATGGGTGTTGAGTAAATATACGTTTAACATATGTATTTTTAAAAGCTATTTTCAGATTTCGTGATTCAAATAATGTAAATTTTAAAAACAACATTTTTTATTGTATTTAGATTTTGAATTTGAAATTTTAAAATGTAAAAATTATATTAAAATAAAAACTTTAATAAATATAGTATTTCTGATTATAAACTCAATTTATTTTTGTTAAATTAAAAATGTATAATATAATATATTGTAAATAATATGATATTGTAAAATAACTATACAAAAAGTTTATAACAAAAAATATGACAATCTAATATTTAGTTTTACAACTATAAATATACTATAGAATACATTTTCAACCATTGCTTAAATTAGAATCTAATTTCTGAAATCTATTATAAAACACATATAAAAATATAAAATATTTCATTAAATTAAATTGCCTACTTAACATGTTCGAAATGTTTTTAGATTATGAGTATATAAATGAGGGATAGTATTGATATGAGGCAAGTGAAACCAAAAGCAAAGGCATATACCCAAATGGACAATATAAGATATGTGAAGAGAAAAGAAGGTGGTTATTGAAGATAAGGTGATTATAGAAGATTCTATGTTGAACAATTAAAGGAGAAGGGACTTAATAGAACTATTTCATAAAATTAAAAAGCTGGTCGATTTTGAACGGCTCAATAAAAACAATTTGCAATTTTTCACTTTTCATTTTAATGTGTTCAGGTGGCAGTCACCGTCTCTCCTCCTTTCCTTCCTCTCGTCTTCTTTCACCGTCTCATCTTCCGGTAAGACACGGCGCCGGCCAGAAGGTCCGAATTCTGGCCGGAGAAGATGGGATGGGACAGTTACTGTCGCGGTTGCCGAACTCCCTTCTTCTCTCTCTCCAAATTCCTTTGTTGACGGCCATGGGATAATTTATTTATGA

mRNA sequence

ATGAAACAGGAAATTGACTGGAATAGTTTGAGGGGAAAATGGGACAGCATGAGGAGAGTCTATTCTGGTTGTGAGCCAAGAAGTAGCGATTACATGGATTCTGTAGATTGGGAAGCAGTTCGTTCTGCAGAACCTACCACGATTGCAGATGCCATCAAGGAACGTGGCCAGCATAACATCATAGCAGGAAGAATCAAGGAATTTCTTCATCGAATAGCTAGAATACATGGTCGCATTGACCTTGAATGGCTTAGAAAGGCTCCTCCAAATGATGTTAAGTGGCAGTCACCGTCTCTCCTCCTTTCCTTCCTCTCGTCTTCTTTCACCGTCTCATCTTCCGGTAAGACACGGCGCCGGCCAGAAGGTCCGAATTCTGGCCGGAGAAGATGGGATGGGACAGTTACTGTCGCGGTTGCCGAACTCCCTTCTTCTCTCTCTCCAAATTCCTTTGTTGACGGCCATGGGATAATTTATTTATGA

Coding sequence (CDS)

ATGAAACAGGAAATTGACTGGAATAGTTTGAGGGGAAAATGGGACAGCATGAGGAGAGTCTATTCTGGTTGTGAGCCAAGAAGTAGCGATTACATGGATTCTGTAGATTGGGAAGCAGTTCGTTCTGCAGAACCTACCACGATTGCAGATGCCATCAAGGAACGTGGCCAGCATAACATCATAGCAGGAAGAATCAAGGAATTTCTTCATCGAATAGCTAGAATACATGGTCGCATTGACCTTGAATGGCTTAGAAAGGCTCCTCCAAATGATGTTAAGTGGCAGTCACCGTCTCTCCTCCTTTCCTTCCTCTCGTCTTCTTTCACCGTCTCATCTTCCGGTAAGACACGGCGCCGGCCAGAAGGTCCGAATTCTGGCCGGAGAAGATGGGATGGGACAGTTACTGTCGCGGTTGCCGAACTCCCTTCTTCTCTCTCTCCAAATTCCTTTGTTGACGGCCATGGGATAATTTATTTATGA

Protein sequence

MKQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNIIAGRIKEFLHRIARIHGRIDLEWLRKAPPNDVKWQSPSLLLSFLSSSFTVSSSGKTRRRPEGPNSGRRRWDGTVTVAVAELPSSLSPNSFVDGHGIIYL

Homology

[Close]

BLAST of Tan0015805 vs. ExPASy Swiss-Prot
Match: Q8LK56 (Transcriptional activator DEMETER OS=Arabidopsis thaliana OX=3702 GN=DME PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-17
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 13   KWDSMRRVYSGCE---PRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNIIAGRIKEFL 72
            +WDS+R+   G E    R+ + MDS+D+EA+R A  + I++AIKERG +N++A RIK+FL
Sbjct: 1449 QWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFL 1508

Query: 73   HRIARIHGRIDLEWLRKAPPNDVK 94
             RI + HG IDLEWLR++PP+  K
Sbjct: 1509 ERIVKDHGGIDLEWLRESPPDKAK 1532

[Close]

BLAST of Tan0015805 vs. ExPASy Swiss-Prot
Match: B8YIE8 (Protein ROS1C OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1C PE=2 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-16
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 8    NSLRGKWDSMRRVYSG---CEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNIIAGR 67
            NS    WD +RR   G    + R  D  DSVDWEAVR A+   I+ AI+ERG +N++A R
Sbjct: 1307 NSENFDWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAIRERGMNNVLAER 1366

Query: 68   IKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
            I++FL+R+   HG IDLEWLR  PP+  K
Sbjct: 1367 IQKFLNRLVTDHGSIDLEWLRDVPPDSAK 1395

[Close]

BLAST of Tan0015805 vs. ExPASy Swiss-Prot
Match: C7IW64 (Protein ROS1A OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1A PE=1 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-15
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 14   WDSMRR--VYS-GCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNIIAGRIKEFLH 73
            WD +R+  +YS G + RS +  DS+DWE +R AE   I+D I+ERG +N++A RIK+FL+
Sbjct: 1403 WDMLRKEVLYSHGNKERSQNAKDSIDWETIRQAEVKEISDTIRERGMNNMLAERIKDFLN 1462

Query: 74   RIARIHGRIDLEWLRKAPPNDVK 94
            R+ R HG IDLEWLR    +  K
Sbjct: 1463 RLVRDHGSIDLEWLRYVDSDKAK 1485

[Close]

BLAST of Tan0015805 vs. ExPASy Swiss-Prot
Match: Q9SR66 (DEMETER-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=DML2 PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 5.0e-15
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 2   KQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNII 61
           K+ +DW+SLR + +S  R       R+   MD+VDW+A+R  +   IA+ I +RG +N++
Sbjct: 786 KKSVDWDSLRKEAESGGRK----RERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNML 845

Query: 62  AGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
           A RIK FL+R+ + HG IDLEWLR  PP+  K
Sbjct: 846 AERIKAFLNRLVKKHGSIDLEWLRDVPPDKAK 873

[Close]

BLAST of Tan0015805 vs. ExPASy Swiss-Prot
Match: Q9SJQ6 (DNA glycosylase/AP lyase ROS1 OS=Arabidopsis thaliana OX=3702 GN=ROS1 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-14
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 2   KQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNII 61
           K+  DW+ LR +     +  +G   ++   MD+VDW+A+R+A+   +A+ IK RG ++ +
Sbjct: 854 KKAFDWDCLRRE----AQARAGIREKTRSTMDTVDWKAIRAADVKEVAETIKSRGMNHKL 913

Query: 62  AGRIKEFLHRIARIHGRIDLEWLRKAPPNDVKWQSPSLLLSF 104
           A RI+ FL R+   HG IDLEWLR  PP+  K      LLSF
Sbjct: 914 AERIQGFLDRLVNDHGSIDLEWLRDVPPDKAK----EYLLSF 947

[Close]

BLAST of Tan0015805 vs. NCBI nr
Match: XP_016902242.1 (PREDICTED: protein ROS1-like isoform X2 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 6.5e-36
Identity = 76/93 (81.72%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1    MKQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNI 60
            MK E+DWNSLR KWDSMRR +  CEPRS D+MDSVDWEAVR AEPT IADAIKERGQHNI
Sbjct: 1146 MKPEVDWNSLREKWDSMRREHPPCEPRSHDHMDSVDWEAVRCAEPTKIADAIKERGQHNI 1205

Query: 61   IAGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
            IAGRIKEFL R AR+HG IDLEWLR APP DVK
Sbjct: 1206 IAGRIKEFLDRTARLHGCIDLEWLRHAPPKDVK 1238

[Close]

BLAST of Tan0015805 vs. NCBI nr
Match: XP_008458622.1 (PREDICTED: protein ROS1-like isoform X1 [Cucumis melo] >KAA0033377.1 protein ROS1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 6.5e-36
Identity = 76/93 (81.72%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1    MKQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNI 60
            MK E+DWNSLR KWDSMRR +  CEPRS D+MDSVDWEAVR AEPT IADAIKERGQHNI
Sbjct: 1150 MKPEVDWNSLREKWDSMRREHPPCEPRSHDHMDSVDWEAVRCAEPTKIADAIKERGQHNI 1209

Query: 61   IAGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
            IAGRIKEFL R AR+HG IDLEWLR APP DVK
Sbjct: 1210 IAGRIKEFLDRTARLHGCIDLEWLRHAPPKDVK 1242

[Close]

BLAST of Tan0015805 vs. NCBI nr
Match: XP_031742557.1 (uncharacterized protein LOC101216331 isoform X2 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-35
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1    MKQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNI 60
            MK E+DWNSLR KWDS+RR +  CEPRS D+MDSVDWEAVR AEPT IADAIKERGQHNI
Sbjct: 1162 MKPEVDWNSLREKWDSLRRKHPPCEPRSRDHMDSVDWEAVRFAEPTKIADAIKERGQHNI 1221

Query: 61   IAGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
            IAGRIK+FL R AR+HG IDLEWLR APP DVK
Sbjct: 1222 IAGRIKQFLDRTARLHGCIDLEWLRHAPPKDVK 1254

[Close]

BLAST of Tan0015805 vs. NCBI nr
Match: XP_011658415.1 (uncharacterized protein LOC101216331 isoform X1 [Cucumis sativus] >XP_031742556.1 uncharacterized protein LOC101216331 isoform X1 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-35
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1    MKQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNI 60
            MK E+DWNSLR KWDS+RR +  CEPRS D+MDSVDWEAVR AEPT IADAIKERGQHNI
Sbjct: 1168 MKPEVDWNSLREKWDSLRRKHPPCEPRSRDHMDSVDWEAVRFAEPTKIADAIKERGQHNI 1227

Query: 61   IAGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
            IAGRIK+FL R AR+HG IDLEWLR APP DVK
Sbjct: 1228 IAGRIKQFLDRTARLHGCIDLEWLRHAPPKDVK 1260

[Close]

BLAST of Tan0015805 vs. NCBI nr
Match: KGN46937.2 (hypothetical protein Csa_020879 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-35
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1    MKQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNI 60
            MK E+DWNSLR KWDS+RR +  CEPRS D+MDSVDWEAVR AEPT IADAIKERGQHNI
Sbjct: 1122 MKPEVDWNSLREKWDSLRRKHPPCEPRSRDHMDSVDWEAVRFAEPTKIADAIKERGQHNI 1181

Query: 61   IAGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
            IAGRIK+FL R AR+HG IDLEWLR APP DVK
Sbjct: 1182 IAGRIKQFLDRTARLHGCIDLEWLRHAPPKDVK 1214

[Close]

BLAST of Tan0015805 vs. ExPASy TrEMBL
Match: A0A5A7SVP4 (Protein ROS1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00270 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.1e-36
Identity = 76/93 (81.72%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1    MKQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNI 60
            MK E+DWNSLR KWDSMRR +  CEPRS D+MDSVDWEAVR AEPT IADAIKERGQHNI
Sbjct: 1150 MKPEVDWNSLREKWDSMRREHPPCEPRSHDHMDSVDWEAVRCAEPTKIADAIKERGQHNI 1209

Query: 61   IAGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
            IAGRIKEFL R AR+HG IDLEWLR APP DVK
Sbjct: 1210 IAGRIKEFLDRTARLHGCIDLEWLRHAPPKDVK 1242

[Close]

BLAST of Tan0015805 vs. ExPASy TrEMBL
Match: A0A1S4E1Z0 (protein ROS1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.1e-36
Identity = 76/93 (81.72%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1    MKQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNI 60
            MK E+DWNSLR KWDSMRR +  CEPRS D+MDSVDWEAVR AEPT IADAIKERGQHNI
Sbjct: 1146 MKPEVDWNSLREKWDSMRREHPPCEPRSHDHMDSVDWEAVRCAEPTKIADAIKERGQHNI 1205

Query: 61   IAGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
            IAGRIKEFL R AR+HG IDLEWLR APP DVK
Sbjct: 1206 IAGRIKEFLDRTARLHGCIDLEWLRHAPPKDVK 1238

[Close]

BLAST of Tan0015805 vs. ExPASy TrEMBL
Match: A0A1S3C8A0 (protein ROS1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.1e-36
Identity = 76/93 (81.72%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1    MKQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNI 60
            MK E+DWNSLR KWDSMRR +  CEPRS D+MDSVDWEAVR AEPT IADAIKERGQHNI
Sbjct: 1150 MKPEVDWNSLREKWDSMRREHPPCEPRSHDHMDSVDWEAVRCAEPTKIADAIKERGQHNI 1209

Query: 61   IAGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
            IAGRIKEFL R AR+HG IDLEWLR APP DVK
Sbjct: 1210 IAGRIKEFLDRTARLHGCIDLEWLRHAPPKDVK 1242

[Close]

BLAST of Tan0015805 vs. ExPASy TrEMBL
Match: A0A0A0KB10 (ENDO3c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G150590 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 74/93 (79.57%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1    MKQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNI 60
            MK E+DWNSLR KWDS+RR +  CEPRS D+MDSVDWEAVR AEPT IADAIKERGQHNI
Sbjct: 1245 MKPEVDWNSLREKWDSLRRKHPPCEPRSRDHMDSVDWEAVRFAEPTKIADAIKERGQHNI 1304

Query: 61   IAGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
            IAGRIK+FL R AR+HG IDLEWLR APP DVK
Sbjct: 1305 IAGRIKQFLDRTARLHGCIDLEWLRHAPPKDVK 1337

[Close]

BLAST of Tan0015805 vs. ExPASy TrEMBL
Match: A0A6J1H5D5 (protein ROS1-like OS=Cucurbita moschata OX=3662 GN=LOC111459738 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 71/93 (76.34%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1    MKQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNI 60
            MK E+DWNSL+ KWDSMRR YS  EPRS D+MDSVDWEAV SA+P  IA AIKERGQHN 
Sbjct: 934  MKPEMDWNSLKEKWDSMRRAYSVHEPRSRDHMDSVDWEAVGSADPIKIAAAIKERGQHNT 993

Query: 61   IAGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
            IA RIKEF++R AR+HG IDLEWLR APPNDVK
Sbjct: 994  IARRIKEFINRTARMHGHIDLEWLRYAPPNDVK 1026

[Close]

BLAST of Tan0015805 vs. TAIR 10
Match: AT5G04560.1 (HhH-GPD base excision DNA repair family protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-18
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 13   KWDSMRRVYSGCE---PRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNIIAGRIKEFL 72
            +WDS+R+   G E    R+ + MDS+D+EA+R A  + I++AIKERG +N++A RIK+FL
Sbjct: 1191 QWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFL 1250

Query: 73   HRIARIHGRIDLEWLRKAPPNDVK 94
             RI + HG IDLEWLR++PP+  K
Sbjct: 1251 ERIVKDHGGIDLEWLRESPPDKAK 1274

[Close]

BLAST of Tan0015805 vs. TAIR 10
Match: AT5G04560.2 (HhH-GPD base excision DNA repair family protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-18
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 13   KWDSMRRVYSGCE---PRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNIIAGRIKEFL 72
            +WDS+R+   G E    R+ + MDS+D+EA+R A  + I++AIKERG +N++A RIK+FL
Sbjct: 1449 QWDSLRKDVEGNEGRQERNKNNMDSIDYEAIRRASISEISEAIKERGMNNMLAVRIKDFL 1508

Query: 73   HRIARIHGRIDLEWLRKAPPNDVK 94
             RI + HG IDLEWLR++PP+  K
Sbjct: 1509 ERIVKDHGGIDLEWLRESPPDKAK 1532

[Close]

BLAST of Tan0015805 vs. TAIR 10
Match: AT3G10010.1 (demeter-like 2 )

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-16
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 2   KQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNII 61
           K+ +DW+SLR + +S  R       R+   MD+VDW+A+R  +   IA+ I +RG +N++
Sbjct: 786 KKSVDWDSLRKEAESGGRK----RERTERTMDTVDWDALRCTDVHKIANIIIKRGMNNML 845

Query: 62  AGRIKEFLHRIARIHGRIDLEWLRKAPPNDVK 94
           A RIK FL+R+ + HG IDLEWLR  PP+  K
Sbjct: 846 AERIKAFLNRLVKKHGSIDLEWLRDVPPDKAK 873

[Close]

BLAST of Tan0015805 vs. TAIR 10
Match: AT2G36490.1 (demeter-like 1 )

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-15
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 2   KQEIDWNSLRGKWDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNII 61
           K+  DW+ LR +     +  +G   ++   MD+VDW+A+R+A+   +A+ IK RG ++ +
Sbjct: 854 KKAFDWDCLRRE----AQARAGIREKTRSTMDTVDWKAIRAADVKEVAETIKSRGMNHKL 913

Query: 62  AGRIKEFLHRIARIHGRIDLEWLRKAPPNDVKWQSPSLLLSF 104
           A RI+ FL R+   HG IDLEWLR  PP+  K      LLSF
Sbjct: 914 AERIQGFLDRLVNDHGSIDLEWLRDVPPDKAK----EYLLSF 947

[Close]

BLAST of Tan0015805 vs. TAIR 10
Match: AT4G34060.1 (demeter-like protein 3 )

HSP 1 Score: 68.9 bits (167), Expect = 4.1e-12
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 14  WDSMRRVYSGCEPRSSDYMDSVDWEAVRSAEPTTIADAIKERGQHNIIAGRIKEFLHRIA 73
           W+++RR+Y+    R   +MDSV+W  VR +    +   IK+RGQ  I++ RI +FL+   
Sbjct: 502 WNNLRRMYTKEGSRPEMHMDSVNWSDVRLSGQNVLETTIKKRGQFRILSERILKFLNDEV 561

Query: 74  RIHGRIDLEWLRKAPPNDVK 94
             +G IDLEWLR AP + VK
Sbjct: 562 NQNGNIDLEWLRNAPSHLVK 581

The following BLAST results are available for this feature:

BLAST of Tan0015805 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LK56	1.8e-17	51.19	Transcriptional activator DEMETER OS=Arabidopsis thaliana OX=3702 GN=DME PE=1 SV...	[more]
B8YIE8	2.0e-16	49.44	Protein ROS1C OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1C PE=2 SV=2	[more]
C7IW64	1.7e-15	49.40	Protein ROS1A OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1A PE=1 SV=2	[more]
Q9SR66	5.0e-15	44.57	DEMETER-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=DML2 PE=3 SV=2	[more]
Q9SJQ6	3.3e-14	40.20	DNA glycosylase/AP lyase ROS1 OS=Arabidopsis thaliana OX=3702 GN=ROS1 PE=1 SV=2	[more]

BLAST of Tan0015805 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902242.1	6.5e-36	81.72	PREDICTED: protein ROS1-like isoform X2 [Cucumis melo]	[more]
XP_008458622.1	6.5e-36	81.72	PREDICTED: protein ROS1-like isoform X1 [Cucumis melo] >KAA0033377.1 protein ROS...	[more]
XP_031742557.1	4.2e-35	79.57	uncharacterized protein LOC101216331 isoform X2 [Cucumis sativus]	[more]
XP_011658415.1	4.2e-35	79.57	uncharacterized protein LOC101216331 isoform X1 [Cucumis sativus] >XP_031742556....	[more]
KGN46937.2	4.2e-35	79.57	hypothetical protein Csa_020879 [Cucumis sativus]	[more]

BLAST of Tan0015805 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVP4	3.1e-36	81.72	Protein ROS1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S4E1Z0	3.1e-36	81.72	protein ROS1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1	[more]
A0A1S3C8A0	3.1e-36	81.72	protein ROS1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1	[more]
A0A0A0KB10	2.0e-35	79.57	ENDO3c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G150590 PE=3...	[more]
A0A6J1H5D5	1.2e-32	76.34	protein ROS1-like OS=Cucurbita moschata OX=3662 GN=LOC111459738 PE=3 SV=1	[more]

BLAST of Tan0015805 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04560.1	1.3e-18	51.19	HhH-GPD base excision DNA repair family protein	[more]
AT5G04560.2	1.3e-18	51.19	HhH-GPD base excision DNA repair family protein	[more]
AT3G10010.1	3.6e-16	44.57	demeter-like 2	[more]
AT2G36490.1	2.3e-15	40.20	demeter-like 1	[more]
AT4G34060.1	4.1e-12	42.50	demeter-like protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.30	Hypothetical protein; domain 2	coord: 1..103 e-value: 4.8E-10 score: 42.0
None	No IPR available	PANTHER	PTHR46213:SF13	TRANSCRIPTIONAL ACTIVATOR DEMETER	coord: 2..93
IPR044811	DNA glycosylase, plant	PANTHER	PTHR46213	TRANSCRIPTIONAL ACTIVATOR DEMETER	coord: 2..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015805.1	Tan0015805.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006287	base-excision repair, gap-filling
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0080111	DNA demethylation
biological_process	GO:0045004	DNA replication proofreading
biological_process	GO:0006272	leading strand elongation
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006297	nucleotide-excision repair, DNA gap filling
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0008622	epsilon DNA polymerase complex
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0035514	DNA demethylase activity
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0019104	DNA N-glycosylase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008310	single-stranded DNA 3'-5' exodeoxyribonuclease activity