Tan0015763 (gene) Snake gourd v1

Overview
NameTan0015763
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal protein L22p/L17e family protein isoform 1
LocationLG04: 443002 .. 444181 (+)
RNA-Seq ExpressionTan0015763
SyntenyTan0015763
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGGATTCTGCTCATTTTTCGAGCTTCTTTCTGCGGGAGGTGAACTGCAGGTTGATATTACTGTGGAAGAAATCTTAATTTCTGCAAGCAACTTTCAAGGTAAGCGTTCGATTAATTTTGATTTCTATTTCACTACTAATTATTGCAGCTTCAATTAGTCTTCGTTCAATTGAATAAGGAAATTTGCTCTAGTATTTTGCGATTTTCGTTTTTGGTTTACCTAGGGCTTTCACTTGGGAATTTTTAGATCAGGTTTGTTGCTTGGGTAATTTCTGACACTAAAAAGAAAAATGGCAAGGAGATAAAATTCAGATAGAACTATGTCTGATTCACCTAATTTGATTTCATAATAGAACTATGTTGTTATATTTATTGAGCGGAAACCGGGAATTCAAGTAAATTTCAGGTTCGATGATTCTCGATTCGTTTATTCGGTGATTTCTTCTTTAATTCGGTTAATTTATCAGGAGAAATTTGAAATGAAGTTCATAATGGAGTTTGCTGAGAATTTGGTATTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCACGTCTATGCGGTCAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGCTATCCACTCCGTCCTTACGGATTTTGGACGTTTGAGCGCCACAATTCTCAGCTGAAGTGGGATGCACAAATTAGTCAGGTTCCTGGTAGAAGGGATCCTTATGATGATATGCTTCAGGACATCAACAATAACTCCAAGTGATTTATGGAGGTTATGTTTCCAAGCTTTTTTCCTGTCCAATTTTATTTCAATATAATGGTCTGATTGGTTCTTGAAACCTTTGGTTGTGGTGTTAACTTTCTTAGTCTTAATTCTTATAATGTGTTGTGTCTGATGTCTCATATCGTGTAGGAAAAAGTCTATTTGGGTTTTGGAGATATGGGTCTTAGATAGATCGCCTGATGTTGTTTTTCAAATACTATGCAGAATACTTGCAAGAGCTCTGAACTCGGTGGTGAAAACTGGGAAGCTCTGCAGCAATTGTTTGAACGTTTATTTGTTGTTGTTTAATTTCATGTGGTGTTAGAGCACCTTGTGGTTTGTATTGTCAAACGGAGATTTTGGTGCTGGAATAAACCTACGCTTTTATGCTCATGAGATATATTTCAAGTTTGTTAATTTGTGCA

mRNA sequence

ACGGATTCTGCTCATTTTTCGAGCTTCTTTCTGCGGGAGGTGAACTGCAGGTTGATATTACTGTGGAAGAAATCTTAATTTCTGCAAGCAACTTTCAAGGAGAAATTTGAAATGAAGTTCATAATGGAGTTTGCTGAGAATTTGGTATTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCACGTCTATGCGGTCAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGCTATCCACTCCGTCCTTACGGATTTTGGACGTTTGAGCGCCACAATTCTCAGCTGAAGTGGGATGCACAAATTAGTCAGGTTCCTGGTAGAAGGGATCCTTATGATGATATGCTTCAGGACATCAACAATAACTCCAAGTGATTTATGGAGAATACTTGCAAGAGCTCTGAACTCGGTGGTGAAAACTGGGAAGCTCTGCAGCAATTGTTTGAACGTTTATTTGTTGTTGTTTAATTTCATGTGGTGTTAGAGCACCTTGTGGTTTGTATTGTCAAACGGAGATTTTGGTGCTGGAATAAACCTACGCTTTTATGCTCATGAGATATATTTCAAGTTTGTTAATTTGTGCA

Coding sequence (CDS)

ATGAAGTTCATAATGGAGTTTGCTGAGAATTTGGTATTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGCAAATTCCGAGAGCACGTCTATGCGGTCAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGCTATCCACTCCGTCCTTACGGATTTTGGACGTTTGAGCGCCACAATTCTCAGCTGAAGTGGGATGCACAAATTAGTCAGGTTCCTGGTAGAAGGGATCCTTATGATGATATGCTTCAGGACATCAACAATAACTCCAAGTGA

Protein sequence

MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHNSQLKWDAQISQVPGRRDPYDDMLQDINNNSK
Homology
[Close]
BLAST of Tan0015763 vs. NCBI nr
Match: XP_038891434.1 (uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 uncharacterized protein LOC120080854 [Benincasa hispida])

HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAENLVLRLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDAQISQVPGRRDPYDDMLQDINNNSK 92
          SQLKWDAQISQ PGRRDPYDDMLQDINNNSK
Sbjct: 61 SQLKWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]
BLAST of Tan0015763 vs. NCBI nr
Match: XP_022151828.1 (uncharacterized protein LOC111019716 [Momordica charantia])

HSP 1 Score: 189.5 bits (480), Expect = 1.3e-44
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDAQISQVPGRRDPYDDMLQDINNNSK 92
          SQL+WDAQISQ PGRRDPYDDMLQDINNNSK
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]
BLAST of Tan0015763 vs. NCBI nr
Match: XP_022956462.1 (uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956464.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022998787.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998795.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998804.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998812.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_023526352.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526360.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526369.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.0 bits (476), Expect = 3.7e-44
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLKWDAQISQVPGRRDPYDDMLQDINNNSK 92
           QL+WDAQISQVPGRRDPYDD+L DINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]
BLAST of Tan0015763 vs. NCBI nr
Match: XP_011655561.1 (uncharacterized protein LOC101213251 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 3.1e-43
Identity = 83/91 (91.21%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFIMEFAE+LVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60

Query: 61 SQLKWDAQISQVPGRRDPYDDMLQDINNNSK 92
          SQLKWD QISQVPGRRDPYDDMLQD NN+SK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 91

[Close]
BLAST of Tan0015763 vs. NCBI nr
Match: KAE8648679.1 (hypothetical protein Csa_008887 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 3.1e-43
Identity = 83/91 (91.21%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 1   MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
           MKFIMEFAE+LVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYPLRPYGFWTF+RHN
Sbjct: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105

Query: 61  SQLKWDAQISQVPGRRDPYDDMLQDINNNSK 92
           SQLKWD QISQVPGRRDPYDDMLQD NN+SK
Sbjct: 106 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 136

[Close]
BLAST of Tan0015763 vs. ExPASy TrEMBL
Match: A0A6J1DD92 (uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019716 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.2e-45
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0 

Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKF+MEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYPLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLKWDAQISQVPGRRDPYDDMLQDINNNSK 92
          SQL+WDAQISQ PGRRDPYDDMLQDINNNSK
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]
BLAST of Tan0015763 vs. ExPASy TrEMBL
Match: A0A6J1K907 (uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLKWDAQISQVPGRRDPYDDMLQDINNNSK 92
           QL+WDAQISQVPGRRDPYDD+L DINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]
BLAST of Tan0015763 vs. ExPASy TrEMBL
Match: A0A6J1GWE2 (uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC111458190 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLKWDAQISQVPGRRDPYDDMLQDINNNSK 92
           QL+WDAQISQVPGRRDPYDD+L DINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]
BLAST of Tan0015763 vs. ExPASy TrEMBL
Match: A0A1S3BE41 (uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.4e-43
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0 

Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFIMEFAE+LVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWS PLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLKWDAQISQVPGRRDPYDDMLQDINNNSK 92
          SQLKWD QISQVPGRRDPYDD+LQD NNNSK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]
BLAST of Tan0015763 vs. ExPASy TrEMBL
Match: A0A5A7SSK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002250 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.4e-43
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0 

Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          MKFIMEFAE+LVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWS PLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLKWDAQISQVPGRRDPYDDMLQDINNNSK 92
          SQLKWD QISQVPGRRDPYDD+LQD NNNSK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]
BLAST of Tan0015763 vs. TAIR 10
Match: AT1G67350.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 149.1 bits (375), Expect = 1.8e-36
Identity = 65/85 (76.47%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          M FIMEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ P+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLKWDAQISQVPGRRDPYDDMLQD 86
          +QL+WD QISQV GRRDPYDD+L+D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

[Close]
BLAST of Tan0015763 vs. TAIR 10
Match: AT1G67350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 149.1 bits (375), Expect = 1.8e-36
Identity = 65/85 (76.47%), Postives = 77/85 (90.59%), Query Frame = 0 

Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60
          M FIMEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ P+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLKWDAQISQVPGRRDPYDDMLQD 86
          +QL+WD QISQV GRRDPYDD+L+D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

The following BLAST results are available for this feature:
BLAST of Tan0015763 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0015763 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038891434.12.0e-4596.70uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 unchara... [more]
XP_022151828.11.3e-4494.51uncharacterized protein LOC111019716 [Momordica charantia][more]
XP_022956462.13.7e-4494.51uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 unchar... [more]
XP_011655561.13.1e-4391.21uncharacterized protein LOC101213251 [Cucumis sativus][more]
KAE8648679.13.1e-4391.21hypothetical protein Csa_008887 [Cucumis sativus][more]
BLAST of Tan0015763 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DD926.2e-4594.51uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1K9071.8e-4494.51uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347... [more]
A0A6J1GWE21.8e-4494.51uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC1114581... [more]
A0A1S3BE414.4e-4392.31uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=... [more]
A0A5A7SSK14.4e-4392.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Tan0015763 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G67350.11.8e-3676.47unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter... [more]
AT1G67350.21.8e-3676.47unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035204NADH-ubiquinone oxidoreductase 11kDa subunitPFAMPF17250NDUFB11coord: 1..85
e-value: 8.2E-53
score: 177.0
IPR035204NADH-ubiquinone oxidoreductase 11kDa subunitPANTHERPTHR37709EXPRESSED PROTEINcoord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0015763.1Tan0015763.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005747 mitochondrial respiratory chain complex I