Tan0015758 (gene) Snake gourd v1

Overview
NameTan0015758
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
LocationLG11: 10931389 .. 10931643 (+)
RNA-Seq ExpressionTan0015758
SyntenyTan0015758
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAAAGTTGGATGTTGGGTGCCCCTAAGGGAGGGGTGTTGGAAGCTGAATGCAGATGTTGTGTGGTCTGATCGCTGCAACAGAGGAGGATTAGGCTGGGTGGTTAGAGACGGCAGAGGAAATCTGATCATTGGCAGAATGGGTCATGTTGATCGAAGGTGGCCTGTGAAAGTACTTGAAGCGAAAGCGGTGGTTGATGGCCTAAAACAGGTAGTTTCTTTATGGCAGGGTCACAATCCCCTCTTGTGGTGA

mRNA sequence

ATGATTAAAGTTGGATGTTGGGTGCCCCTAAGGGAGGGGTGTTGGAAGCTGAATGCAGATGTTGTGTGGTCTGATCGCTGCAACAGAGGAGGATTAGGCTGGGTGGTTAGAGACGGCAGAGGAAATCTGATCATTGGCAGAATGGGTCATGTTGATCGAAGGTGGCCTGTGAAAGTACTTGAAGCGAAAGCGGTGGTTGATGGCCTAAAACAGGTAGTTTCTTTATGGCAGGGTCACAATCCCCTCTTGTGGTGA

Coding sequence (CDS)

ATGATTAAAGTTGGATGTTGGGTGCCCCTAAGGGAGGGGTGTTGGAAGCTGAATGCAGATGTTGTGTGGTCTGATCGCTGCAACAGAGGAGGATTAGGCTGGGTGGTTAGAGACGGCAGAGGAAATCTGATCATTGGCAGAATGGGTCATGTTGATCGAAGGTGGCCTGTGAAAGTACTTGAAGCGAAAGCGGTGGTTGATGGCCTAAAACAGGTAGTTTCTTTATGGCAGGGTCACAATCCCCTCTTGTGGTGA

Protein sequence

MIKVGCWVPLREGCWKLNADVVWSDRCNRGGLGWVVRDGRGNLIIGRMGHVDRRWPVKVLEAKAVVDGLKQVVSLWQGHNPLLW
Homology
BLAST of Tan0015758 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 7   WVPLREGCWKLNADVVWSDRCNRGGLGWVVRDGRGNLIIGRMGHVDRRWPVKVLEAKAVV 66
           W P     W LNAD  WSD  +RGG+GW++R   G++++     V+    VK+LEA A++
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 67  DGLKQVVSL 76
           +GL+ + +L
Sbjct: 131 EGLRNLTNL 139

BLAST of Tan0015758 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 25/73 (34.25%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 16 KLNADVVWSDRCNRGGLGWVVRDGRGNLIIGRMGHVDRRWPVKVLEAKAVVDGLKQVVSL 75
          KLN+   WS+   +GG+ WV+ D  G+ I      + R+W VK+LE KA+++GLK  + +
Sbjct: 7  KLNSYASWSEEAGKGGVSWVIHDSLGSSICIECKELRRKWLVKMLEGKAMIEGLKTYLLI 66

Query: 76 WQ----GHNPLLW 85
           +     H P+++
Sbjct: 67 RETVSYSHRPIIF 79

BLAST of Tan0015758 vs. NCBI nr
Match: KAA0038679.1 (hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK31290.1 hypothetical protein E5676_scaffold455G005870 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-05
Identity = 29/77 (37.66%), Postives = 39/77 (50.65%), Query Frame = 0

Query: 7  WVPLREGCWKLNADVVWSDRCNRGGLGWVVRDGRGNLIIGRMGHVDRRWPVKVLEAKAVV 66
          W+    G W+ N D  W+D     G  WVVRD  G  I+      + +WP++VLEA A  
Sbjct: 12 WMSPYVGFWRFNLDASWNDVEEISGTSWVVRDSAGAFILASCERAEVKWPMEVLEALATN 71

Query: 67 DGLKQVVSLWQGHNPLL 84
           GL  V S + GH  +L
Sbjct: 72 RGL-IVYSDYFGHEDVL 87

BLAST of Tan0015758 vs. NCBI nr
Match: XP_021800463.1 (uncharacterized protein LOC110744764 [Prunus avium])

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-05
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 0

Query: 7   WVPLREGCWKLNADVVWSDRCNRGGLGWVVRDGRGNLIIGRMGHVDRRWPVKVLEAKAVV 66
           W P REG  K+N D  W      G +G V+RD RGNLI G      R  P +V EA+A++
Sbjct: 87  WRPPREGLIKINVDGAWHKNTMHGAVGCVIRDNRGNLIGGASSFTVRSSPEEV-EAEAIL 146

Query: 67  DGLK 71
           +GLK
Sbjct: 147 EGLK 149

BLAST of Tan0015758 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 22/66 (33.33%), Postives = 33/66 (50.00%), Query Frame = 0

Query: 7   WVPLREGCWKLNADVVWSDRCNRGGLGWVVRDGRGNLIIGRMGHVDRRWPVKVLEAKAVV 66
           W P     WKLN D  W    N GG+GW++RD +G +I      +     +  LE  A+ 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 67  DGLKQV 73
           +GL+ +
Sbjct: 139 EGLRAI 144

BLAST of Tan0015758 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.3e-08
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 7   WVPLREGCWKLNADVVWSDRCNRGGLGWVVRDGRGNLIIGRMGHVDRRWPVKVLEAKAVV 66
           W P     W LNAD  WSD  +RGG+GW++R   G++++     V+    VK+LEA A++
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 67  DGLKQVVSL 76
           +GL+ + +L
Sbjct: 131 EGLRNLTNL 139

BLAST of Tan0015758 vs. ExPASy TrEMBL
Match: A0A5D3E6P6 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005870 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 29/77 (37.66%), Postives = 39/77 (50.65%), Query Frame = 0

Query: 7  WVPLREGCWKLNADVVWSDRCNRGGLGWVVRDGRGNLIIGRMGHVDRRWPVKVLEAKAVV 66
          W+    G W+ N D  W+D     G  WVVRD  G  I+      + +WP++VLEA A  
Sbjct: 12 WMSPYVGFWRFNLDASWNDVEEISGTSWVVRDSAGAFILASCERAEVKWPMEVLEALATN 71

Query: 67 DGLKQVVSLWQGHNPLL 84
           GL  V S + GH  +L
Sbjct: 72 RGL-IVYSDYFGHEDVL 87

BLAST of Tan0015758 vs. ExPASy TrEMBL
Match: A0A6P5RF39 (uncharacterized protein LOC110744764 OS=Prunus avium OX=42229 GN=LOC110744764 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-05
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 0

Query: 7   WVPLREGCWKLNADVVWSDRCNRGGLGWVVRDGRGNLIIGRMGHVDRRWPVKVLEAKAVV 66
           W P REG  K+N D  W      G +G V+RD RGNLI G      R  P +V EA+A++
Sbjct: 87  WRPPREGLIKINVDGAWHKNTMHGAVGCVIRDNRGNLIGGASSFTVRSSPEEV-EAEAIL 146

Query: 67  DGLK 71
           +GLK
Sbjct: 147 EGLK 149

BLAST of Tan0015758 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.5e-05
Identity = 22/66 (33.33%), Postives = 33/66 (50.00%), Query Frame = 0

Query: 7   WVPLREGCWKLNADVVWSDRCNRGGLGWVVRDGRGNLIIGRMGHVDRRWPVKVLEAKAVV 66
           W P     WKLN D  W    N GG+GW++RD +G +I      +     +  LE  A+ 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 67  DGLKQV 73
           +GL+ +
Sbjct: 139 EGLRAI 144

BLAST of Tan0015758 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 21/66 (31.82%), Postives = 33/66 (50.00%), Query Frame = 0

Query: 7   WVPLREGCWKLNADVVWSDRCNRGGLGWVVRDGRGNLIIGRMGHVDRRWPVKVLEAKAVV 66
           W P     WKLN +  W    N GG+GW++RD +G +I      +     +  LE  A+ 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 67  DGLKQV 73
           +GL+ +
Sbjct: 139 EGLRAI 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022155262.11.5e-0739.13uncharacterized protein LOC111022403 [Momordica charantia][more]
KAG6599977.11.4e-0534.25hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0038679.14.1e-0537.66hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK3129... [more]
XP_021800463.15.3e-0545.31uncharacterized protein LOC110744764 [Prunus avium][more]
XP_022156777.11.6e-0433.33uncharacterized protein LOC111023608 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1DNV97.3e-0839.13uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5D3E6P62.0e-0537.66RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A6P5RF392.6e-0545.31uncharacterized protein LOC110744764 OS=Prunus avium OX=42229 GN=LOC110744764 PE... [more]
A0A6J1DSV17.5e-0533.33uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CP262.2e-0431.82uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 18..74
e-value: 4.6E-7
score: 29.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0015758.1Tan0015758.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity