Tan0015725 (gene) Snake gourd v1

Overview


Name	Tan0015725
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG06: 7340973 .. 7341606 (-)
RNA-Seq Expression	Tan0015725
Synteny	Tan0015725

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGCTTCCAATGGTCAAATACAGGCCAATTCAAACTCATTTTCCTAATAATCTCAAATTATAAATAATGCTAACCAACCATTACACTTTATACTTCCATCTTCATTCTTCAATTCTCTTCTATTATTCTTCCAAAAAAAAAAAAAAATACTCAAATTAATGGCTTCCATCAAAATCTTAATTCCAATAGCTCTGGTTGCTCTTCTCTTGATCTCACAAATCCTAACCACTTCTGCAGTCGATTCTGATCTTATCGGAATTCATGGTCGGAATATCCTTCAGATGACGAAAGATCATCATCAGGTTGCTGAAATCAATGGCGAATACTCTTTCGAACAAAAAATCAGATCGAGGCGTGCTCGACGATCCGTGGTGAGAGCTGAAGCTCCGAGTTCATCAATGACGAATCGGAGTCGAACGTCATCGTTTGGAGTTGGGTCTATGATGTTTCTCTTTATTGTTTTTAGTTTGTTTGCGTGAAAGTGTGAATGACTATTCATTTCTCAAGATTTTGGGTTGTATTTATTTATTATTTTTGTGATGAAAAACTTTGGTTGTATTCATTTGTTTGGATTTAGGATTTTGTATTTTGTGTGAGGCAGATTTAATATTATAAATATCATTTACTTGTTTA

mRNA sequence

ACGGCTTCCAATGGTCAAATACAGGCCAATTCAAACTCATTTTCCTAATAATCTCAAATTATAAATAATGCTAACCAACCATTACACTTTATACTTCCATCTTCATTCTTCAATTCTCTTCTATTATTCTTCCAAAAAAAAAAAAAAATACTCAAATTAATGGCTTCCATCAAAATCTTAATTCCAATAGCTCTGGTTGCTCTTCTCTTGATCTCACAAATCCTAACCACTTCTGCAGTCGATTCTGATCTTATCGGAATTCATGGTCGGAATATCCTTCAGATGACGAAAGATCATCATCAGGTTGCTGAAATCAATGGCGAATACTCTTTCGAACAAAAAATCAGATCGAGGCGTGCTCGACGATCCGTGGTGAGAGCTGAAGCTCCGAGTTCATCAATGACGAATCGGAGTCGAACGTCATCGTTTGGAGTTGGGTCTATGATGTTTCTCTTTATTGTTTTTAGTTTGTTTGCGTGAAAGTGTGAATGACTATTCATTTCTCAAGATTTTGGGTTGTATTTATTTATTATTTTTGTGATGAAAAACTTTGGTTGTATTCATTTGTTTGGATTTAGGATTTTGTATTTTGTGTGAGGCAGATTTAATATTATAAATATCATTTACTTGTTTA

Coding sequence (CDS)

ATGGCTTCCATCAAAATCTTAATTCCAATAGCTCTGGTTGCTCTTCTCTTGATCTCACAAATCCTAACCACTTCTGCAGTCGATTCTGATCTTATCGGAATTCATGGTCGGAATATCCTTCAGATGACGAAAGATCATCATCAGGTTGCTGAAATCAATGGCGAATACTCTTTCGAACAAAAAATCAGATCGAGGCGTGCTCGACGATCCGTGGTGAGAGCTGAAGCTCCGAGTTCATCAATGACGAATCGGAGTCGAACGTCATCGTTTGGAGTTGGGTCTATGATGTTTCTCTTTATTGTTTTTAGTTTGTTTGCGTGA

Protein sequence

MASIKILIPIALVALLLISQILTTSAVDSDLIGIHGRNILQMTKDHHQVAEINGEYSFEQKIRSRRARRSVVRAEAPSSSMTNRSRTSSFGVGSMMFLFIVFSLFA

Homology

[Close]

BLAST of Tan0015725 vs. NCBI nr
Match: XP_022992473.1 (uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 65/112 (58.04%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 1   MASIKILIPIALVALLLISQILTTSAVD-----SDLIGIHGRNILQMTKDHHQVAE--IN 60
           MA IK LI IAL+ALLL+ + L  SA D     S L G+   + LQ T + HQVAE  I 
Sbjct: 63  MAPIKSLISIALLALLLLFERLPISAADHGVAPSPLAGVFRLDTLQ-TAERHQVAENGIG 122

Query: 61  GEYSFEQKIRSRRARRSVVRAEAPSSSMTNRSRTSSFGVGSMMFLFIVFSLF 106
            +YSFEQKIR RRARR+V RAE PS S  N SRTSSFGVGS++ L  VF LF
Sbjct: 123 NQYSFEQKIR-RRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLF 172

[Close]

BLAST of Tan0015725 vs. NCBI nr
Match: XP_022954099.1 (uncharacterized protein LOC111456466 [Cucurbita moschata])

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-12
Identity = 65/112 (58.04%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 1   MASIKILIPIALVALLLISQILTTSAVD-----SDLIGIHGRNILQMTKDHHQVAE--IN 60
           MA IK LI IAL+ALLL+S+ L  SA D     S L  +  R+ LQ T + HQVAE  I 
Sbjct: 90  MAPIKSLISIALLALLLLSEHLPISAADHGVAPSPLARVFRRDTLQ-TAERHQVAENGIG 149

Query: 61  GEYSFEQKIRSRRARRSVVRAEAPSSSMTNRSRTSSFGVGSMMFLFIVFSLF 106
            +YSFEQKIR RRARR+V RAE PS S  N S+TSSFGVGS++ L  VF LF
Sbjct: 150 YQYSFEQKIR-RRARRAVRRAEGPSPSSANWSQTSSFGVGSLLCLCTVFGLF 199

[Close]

BLAST of Tan0015725 vs. NCBI nr
Match: KAG6575858.1 (hypothetical protein SDJN03_26497, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-12
Identity = 62/105 (59.05%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 1   MASIKILIPIALVALLLISQILTTSAVD-----SDLIGIHGRNILQMTKDHHQVAE--IN 60
           MA IK LI IAL+ALLL+S+ L  SA D     S L G+  R+ LQ T + HQVAE  I 
Sbjct: 1   MAPIKSLISIALLALLLLSEHLPISAADHGVAPSPLAGVFRRDTLQ-TAERHQVAENGIG 60

Query: 61  GEYSFEQKIRSRRARRSVVRAEAPSSSMTNRSRTSSFGVGSMMFL 99
            +YSFEQKIR RRARR+V RAE PS S  N SRTSSFG+GS++ L
Sbjct: 61  YQYSFEQKIR-RRARRAVRRAEGPSPSSANWSRTSSFGIGSLLCL 103

[Close]

BLAST of Tan0015725 vs. NCBI nr
Match: KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 51/110 (46.36%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 1   MASIKILIPIALVALLLISQILTTSA-----VDSDLIGIHGRNILQMTKDHHQVAEINGE 60
           MA+IK L+ IAL+ALLL  + L TSA       + L GI  RNI+Q T DHHQVA    E
Sbjct: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVA----E 60

Query: 61  YSFEQKIRSRRARRSVVRAEAPSSSMTNRSRTSSFGVGSMMFLFIVFSLF 106
             F   I+ RR R   V    P +S  NRSR +  GVGSM+ +F++  LF
Sbjct: 61  KKFNVHIK-RRMRMRPVLIGRPKTSAANRSREAFCGVGSMLCIFVLLGLF 105

[Close]

BLAST of Tan0015725 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 1   MASIKILIPIALVALLLISQILTTSAVD-----SDLIGIHGRNILQMTKDHHQVAEINGE 60
           MA++K L+ +AL+ALLL S+ LT SAVD     + L G+  RN+LQ     HQ+A+ + E
Sbjct: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAA--HQIADNSVE 60

Query: 61  YSFEQKIRSRRARRSVVRAEAPSSSMTNRSRTSSFGVGSMMFLFIVF 103
            S E+K+     RR    A    SS  NRSR +S GVGS++ +  +F
Sbjct: 61  SSPERKMNVHIKRRMRPVATGTRSSAANRSRIASIGVGSVLVVLGLF 105

[Close]

BLAST of Tan0015725 vs. ExPASy TrEMBL
Match: A0A6J1JZB1 (uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488793 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.5e-13
Identity = 65/112 (58.04%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 1   MASIKILIPIALVALLLISQILTTSAVD-----SDLIGIHGRNILQMTKDHHQVAE--IN 60
           MA IK LI IAL+ALLL+ + L  SA D     S L G+   + LQ T + HQVAE  I 
Sbjct: 63  MAPIKSLISIALLALLLLFERLPISAADHGVAPSPLAGVFRLDTLQ-TAERHQVAENGIG 122

Query: 61  GEYSFEQKIRSRRARRSVVRAEAPSSSMTNRSRTSSFGVGSMMFLFIVFSLF 106
            +YSFEQKIR RRARR+V RAE PS S  N SRTSSFGVGS++ L  VF LF
Sbjct: 123 NQYSFEQKIR-RRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLF 172

[Close]

BLAST of Tan0015725 vs. ExPASy TrEMBL
Match: A0A6J1GRX2 (uncharacterized protein LOC111456466 OS=Cucurbita moschata OX=3662 GN=LOC111456466 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 65/112 (58.04%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 1   MASIKILIPIALVALLLISQILTTSAVD-----SDLIGIHGRNILQMTKDHHQVAE--IN 60
           MA IK LI IAL+ALLL+S+ L  SA D     S L  +  R+ LQ T + HQVAE  I 
Sbjct: 90  MAPIKSLISIALLALLLLSEHLPISAADHGVAPSPLARVFRRDTLQ-TAERHQVAENGIG 149

Query: 61  GEYSFEQKIRSRRARRSVVRAEAPSSSMTNRSRTSSFGVGSMMFLFIVFSLF 106
            +YSFEQKIR RRARR+V RAE PS S  N S+TSSFGVGS++ L  VF LF
Sbjct: 150 YQYSFEQKIR-RRARRAVRRAEGPSPSSANWSQTSSFGVGSLLCLCTVFGLF 199

[Close]

BLAST of Tan0015725 vs. ExPASy TrEMBL
Match: A0A0A0K934 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394070 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.8e-07
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 4  IKILIPIALVALLLISQILTTSAVDSDLIGIHGRNILQMTKDHHQVAEING-EYSFEQKI 63
          IK LI +AL+ALLL+S+  +TSAV+ ++       + QMT+    V   NG  YSFEQKI
Sbjct: 5  IKSLISVALLALLLLSRFPSTSAVNHNMAPNSPIGMFQMTEYQQVVENKNGYRYSFEQKI 64

Query: 64 RSRRARRSVVRAEAPSSSMTNRSRTSSFGVG 94
            +RARRS   AE PS SM NRSR + F +G
Sbjct: 65 VKKRARRSKKEAEGPSPSMANRSRMTCFIIG 95

The following BLAST results are available for this feature:

BLAST of Tan0015725 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0015725 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992473.1	2.0e-12	58.04	uncharacterized protein LOC111488793 isoform X1 [Cucurbita maxima]	[more]
XP_022954099.1	3.3e-12	58.04	uncharacterized protein LOC111456466 [Cucurbita moschata]	[more]
KAG6575858.1	4.3e-12	59.05	hypothetical protein SDJN03_26497, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6593163.1	1.6e-06	46.36	hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575859.1	5.7e-04	42.06	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0015725 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZB1	9.5e-13	58.04	uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GRX2	1.6e-12	58.04	uncharacterized protein LOC111456466 OS=Cucurbita moschata OX=3662 GN=LOC1114564...	[more]
A0A0A0K934	7.8e-07	49.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394070 PE=4 SV=1	[more]

BLAST of Tan0015725 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015725.1	Tan0015725.1	mRNA