Tan0015606 (gene) Snake gourd v1

Overview


Name	Tan0015606
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ubiquitin-like domain-containing protein
Location	LG02: 2665686 .. 2666000 (-)
RNA-Seq Expression	Tan0015606
Synteny	Tan0015606

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGGTGGTGGAAAACTTGACTGGTTCTCTGTTCTACGTTCAGGTTGAAGACGATGCCACGGTTTTTGATCTTAGAAGCGAGATCAGTTCTCAACAGAACCTCCCTTCTGACCGTCTGATCTTTGTTTCCGACGACAATCGTGGCCGTCTGATCTCTGACGACGATGATGGAATCTCGCTCGTTGATTTTGGCGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCCCTTGATGACGATGATGGCGATGATCGTGATGCTCGGCAGCTCTTCTTTACCTGTCCTGATCTTCTTCTCTTCGAGTAG

mRNA sequence

ATGAAATTGGTGGTGGAAAACTTGACTGGTTCTCTGTTCTACGTTCAGGTTGAAGACGATGCCACGGTTTTTGATCTTAGAAGCGAGATCAGTTCTCAACAGAACCTCCCTTCTGACCGTCTGATCTTTGTTTCCGACGACAATCGTGGCCGTCTGATCTCTGACGACGATGATGGAATCTCGCTCGTTGATTTTGGCGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCCCTTGATGACGATGATGGCGATGATCGTGATGCTCGGCAGCTCTTCTTTACCTGTCCTGATCTTCTTCTCTTCGAGTAG

Coding sequence (CDS)

ATGAAATTGGTGGTGGAAAACTTGACTGGTTCTCTGTTCTACGTTCAGGTTGAAGACGATGCCACGGTTTTTGATCTTAGAAGCGAGATCAGTTCTCAACAGAACCTCCCTTCTGACCGTCTGATCTTTGTTTCCGACGACAATCGTGGCCGTCTGATCTCTGACGACGATGATGGAATCTCGCTCGTTGATTTTGGCGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCCCTTGATGACGATGATGGCGATGATCGTGATGCTCGGCAGCTCTTCTTTACCTGTCCTGATCTTCTTCTCTTCGAGTAG

Protein sequence

MKLVVENLTGSLFYVQVEDDATVFDLRSEISSQQNLPSDRLIFVSDDNRGRLISDDDDGISLVDFGVRDGSHIYIFFCPLDDDDGDDRDARQLFFTCPDLLLFE

Homology

[Close]

BLAST of Tan0015606 vs. NCBI nr
Match: XP_022989504.1 (uncharacterized protein LOC111486561 [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 5.3e-39
Identity = 85/104 (81.73%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MKLVVENLTGSLFYVQVEDDATVFDLRSEISSQQNLPSDRLIFVSDDNRGRLISDDDDGI 60
           MKLV ENLTGSLFYV+V+D ATV DLR+EISSQQ+LPSDRL+FV D +RGRLIS  DDGI
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDDDGDDRDARQLFFTCPDLLLFE 105
           SLVDFG+RDGS IYIFFCPLDDD GDD DARQLFF CPDLLLF+
Sbjct: 61  SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLFQ 104

[Close]

BLAST of Tan0015606 vs. NCBI nr
Match: KAG6589175.1 (hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.5 bits (415), Expect = 5.0e-37
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MKLVVENLTGSLFYVQVEDDATVFDLRSEISSQQNLPSDRLIFVSDDNRGRLISDDDDGI 60
           MKLV ENLTGSLFYV+V+D ATV DLR+EISSQQ+LPSDRL+FV D +RGRLIS  DDG 
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDDDGDDRDARQLFFTCPDLLLFE 105
           SLVDFG+RDGS IY+FFCPLDD+  DD DARQLFF CPDLLLF+
Sbjct: 61  SLVDFGLRDGSLIYVFFCPLDDEGVDDLDARQLFFNCPDLLLFQ 104

[Close]

BLAST of Tan0015606 vs. NCBI nr
Match: XP_022930696.1 (uncharacterized protein LOC111437093 [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-36
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MKLVVENLTGSLFYVQVEDDATVFDLRSEISSQQNLPSDRLIFVSDDNRGRLISDDDDGI 60
           MKLV ENLTGSLFYV+V+D ATV DLR+EISSQQ+LPSDRL+FV D +RGRLIS  DDG 
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDDDGDDRDARQLFFTCPDLLLFE 105
           SLVDFG+RDGS IY+FFCPLD++  DD DARQLFF CPDLLLF+
Sbjct: 61  SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLFQ 104

[Close]

BLAST of Tan0015606 vs. NCBI nr
Match: KGN43536.1 (hypothetical protein Csa_020453 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 7.0e-31
Identity = 77/107 (71.96%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MKLVVENLTGSLFYVQVEDDATVFDLRSEISS---QQNLPSDRLIFVSDDNRGRLISDDD 60
           MKLVV+NLTGSLF+V+VEDDATV DLR++I++   Q NLPS RLIF+ D N  RLIS  D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGVRDGSHIYIFFCPLDDDDGDDRDARQLFFT-CPDLLLF 104
           DGISLVDFG+RDGSHIYIFF PL DDDGDD +AR+ FFT   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of Tan0015606 vs. NCBI nr
Match: XP_022136124.1 (uncharacterized protein LOC111007894 [Momordica charantia])

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-29
Identity = 75/115 (65.22%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MKLVVENLTGSLFYVQVEDDATVFDLRSEISSQQN--LPSDRLIFVSDDNRGRLISDDDD 60
           MKL VENLTGSLF++QV+DDATV DL++EIS+  N  LPSDRLIF++DDN GR IS DDD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GISLVDFGVRDGSHIYIFFCPLDDDD-----GDDRD----ARQLFFTCPDLLLFE 105
           G SLVD GV+DGSHIYIFF PLD +D     GDD D    +R  FFTC ++LLF+
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLFD 115

[Close]

BLAST of Tan0015606 vs. ExPASy TrEMBL
Match: A0A6J1JPI4 (uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.6e-39
Identity = 85/104 (81.73%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MKLVVENLTGSLFYVQVEDDATVFDLRSEISSQQNLPSDRLIFVSDDNRGRLISDDDDGI 60
           MKLV ENLTGSLFYV+V+D ATV DLR+EISSQQ+LPSDRL+FV D +RGRLIS  DDGI
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDDDGDDRDARQLFFTCPDLLLFE 105
           SLVDFG+RDGS IYIFFCPLDDD GDD DARQLFF CPDLLLF+
Sbjct: 61  SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLFQ 104

[Close]

BLAST of Tan0015606 vs. ExPASy TrEMBL
Match: A0A6J1ERN4 (uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC111437093 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.1e-37
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MKLVVENLTGSLFYVQVEDDATVFDLRSEISSQQNLPSDRLIFVSDDNRGRLISDDDDGI 60
           MKLV ENLTGSLFYV+V+D ATV DLR+EISSQQ+LPSDRL+FV D +RGRLIS  DDG 
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDDDGDDRDARQLFFTCPDLLLFE 105
           SLVDFG+RDGS IY+FFCPLD++  DD DARQLFF CPDLLLF+
Sbjct: 61  SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLFQ 104

[Close]

BLAST of Tan0015606 vs. ExPASy TrEMBL
Match: A0A0A0K6V6 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.4e-31
Identity = 77/107 (71.96%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MKLVVENLTGSLFYVQVEDDATVFDLRSEISS---QQNLPSDRLIFVSDDNRGRLISDDD 60
           MKLVV+NLTGSLF+V+VEDDATV DLR++I++   Q NLPS RLIF+ D N  RLIS  D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGVRDGSHIYIFFCPLDDDDGDDRDARQLFFT-CPDLLLF 104
           DGISLVDFG+RDGSHIYIFF PL DDDGDD +AR+ FFT   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of Tan0015606 vs. ExPASy TrEMBL
Match: A0A6J1C3E5 (uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007894 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.4e-29
Identity = 75/115 (65.22%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MKLVVENLTGSLFYVQVEDDATVFDLRSEISSQQN--LPSDRLIFVSDDNRGRLISDDDD 60
           MKL VENLTGSLF++QV+DDATV DL++EIS+  N  LPSDRLIF++DDN GR IS DDD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GISLVDFGVRDGSHIYIFFCPLDDDD-----GDDRD----ARQLFFTCPDLLLFE 105
           G SLVD GV+DGSHIYIFF PLD +D     GDD D    +R  FFTC ++LLF+
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLFD 115

[Close]

BLAST of Tan0015606 vs. ExPASy TrEMBL
Match: A0A4P1RCV9 (Ubiquitin-like domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_03098 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 57/102 (55.88%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   MKLVVENLTGSLFYVQVEDDATVFDLRSEISSQQNLPSDRLIFVSDDNRGRLISDDDDGI 60
           MK+VVENLTG+LFY+QV +DAT+ DL+ EI +QQ LP DRLI V D +R  L+  D++ +
Sbjct: 1   MKVVVENLTGTLFYIQVGNDATIEDLKKEIETQQKLPCDRLILVLDADRSPLMRKDEEKV 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDDDGDDRDARQLFFTCPDLLL 103
           SLVD GV+DGSHIY+FF PLD++D ++    Q+ FT PD  +
Sbjct: 61  SLVDCGVQDGSHIYLFFIPLDNNDSEN----QVMFTRPDFFI 98

[Close]

BLAST of Tan0015606 vs. TAIR 10
Match: AT2G32360.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-10
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1  MKLVVENLTGSLFYVQVEDDATVFDLRSEISSQQNLPSDRLIFV-SDDNRGRLISDDDDG 60
          MK+ VE +TG+     V +DATV  ++ +I+ +  LP  RLI V  D+   RL+ +D+D 
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKIAVEVKLPVTRLILVIGDEETRRLVMEDEDD 60

Query: 61 ISLVDFGVRDGSHIYIFF 78
          + L D GV + SHIY+FF
Sbjct: 61 MMLRDLGVGEDSHIYLFF 78

The following BLAST results are available for this feature:

BLAST of Tan0015606 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0015606 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989504.1	5.3e-39	81.73	uncharacterized protein LOC111486561 [Cucurbita maxima]	[more]
KAG6589175.1	5.0e-37	77.88	hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930696.1	1.5e-36	76.92	uncharacterized protein LOC111437093 [Cucurbita moschata]	[more]
KGN43536.1	7.0e-31	71.96	hypothetical protein Csa_020453 [Cucumis sativus]	[more]
XP_022136124.1	2.9e-29	65.22	uncharacterized protein LOC111007894 [Momordica charantia]	[more]

BLAST of Tan0015606 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPI4	2.6e-39	81.73	uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561...	[more]
A0A6J1ERN4	7.1e-37	76.92	uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A0A0K6V6	3.4e-31	71.96	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044...	[more]
A0A6J1C3E5	1.4e-29	65.22	uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A4P1RCV9	2.9e-22	55.88	Ubiquitin-like domain-containing protein OS=Lupinus angustifolius OX=3871 GN=Tan...	[more]

BLAST of Tan0015606 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32360.1	3.3e-10	42.31	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 1..77 e-value: 3.8E-9 score: 38.2
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 3..76 e-value: 4.69344E-10 score: 49.517
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..75 score: 12.944685
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015606.1	Tan0015606.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding