Tan0015602 (gene) Snake gourd v1

Overview


Name	Tan0015602
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNase H domain-containing protein
Location	LG01: 15617976 .. 15620213 (-)
RNA-Seq Expression	Tan0015602
Synteny	Tan0015602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACAAAGTCCCACTCACCTAGTCCCCTAACTACGTTCTCTCTGTCCAGCTCCTCTCTCTCTCTCCTCTTTCTCTCTCTACCTATCTGCATGGCCTTCGTCTTCTCTCTCTCTCCCTCTGCGGATTAGGGTTCTCTGGTTCCTTCCGCGACCTCCCTTTCTGCATGGTAGATCAAGATTCCCCTCGCTGTAAGCTTCCGATTGACCTTCTTTTCGTTTGCATTTCCTTCGCCTGCTTAAATCACTGGACATCGCGTTCGTTTTTGCGCCCATTTTGTTTATGTGCCTCTGTTTGTATTGTTTTTGTGTTATTTTCTCTCTTTTTTTTTTTTTGGATTTTTTGTTTTTCCTTTGACTTCGCGTTGTGGCATGCATGGTTTGGTTTTCTGTGATTGTTTGATTTGGTAGAAAATGTTTTTTTTCGTTGTCTTTCTTCTGGTTTTATTGGTTAAGCGTTTCGTTTTCTGGTTTTCTGTTCTCGTGCATTTGTTGGGGAGGGATTTTTAATAACTGCATTTTTCAATTTTGGAATATTAAGGGTTTAGCAGATTAACCTCGCATGGGTGAGTATTTCTTATTGTTTCGTTTACGTTTTACTTTTCAGGAGGATTTGGAGTTCAATGTTGCGTTAAACCCTGCTTTTGTGTCTTGTTTTGAATCTCGAACCAAGTGGCGTCGTTGATATAATACTATGACCAACAATGCTGGTTATTATATGGAGTGTGTAATGCCTGGAGTGAAAACTCGCTTCTGTTTTTTCTTAAGTTGCAATTATTTAGTTTGGTTTGAACGTGTTATTGTAACTTCCCTTCATTTTTATAGGATTAATCATACTAATGCAAGTTTATTTCTTATGGTGTCCATATTAGTTTTACATACTTTACGTTGTAGTTGTAGTTTGTAAATCCACCCTAAACTAGAGTTAATGTACGAATACTATTTTAAGCGTAGCACGGTACTGAAAGCTAAAAATCTAAACTAGAGTTAATGTACGAATACTCGTTTCTATTTCTTATCTTTACGCCTTCCCAGTTTGGTCTGTTCTTTGAAAGGCTTTTTTGGGGTCGTTTTCGTATTGGTATGTTGCCTTCACTGATGGGTGAAATCTTCAATAAAATAAGGATATGGAAAAGAGAAAAACTTGCCCAAGTTTCTTGCTTTGATTTGAGAGAGAGGGAAAAGAGAGACACCCAAGTTTTTCTCTAGGGAAAATTGCCCACAATTTCTTGCTTTAACTCTGAGTTTTCAGGGTCTCTTTTGAAAGAAGATAGTTATAGAGAGTTATGTCTTGCACTACTTTTAATCTTGGAGGAGGATCACGTCCGTTTTGTAACATTGATAAAAAATCATCTTCGATTCTTTAATGGGTTTGTGCCCAATGGCCGATGCAATTTAGTTTGTAACTCTGCAATTTCTTCTTCTGTTGGATCCCTCAGCTTCAATTCTCTTCCATTTTCTCTTCCACAATGGCCCGCGTCTCTCCTATCATGTCATCAACTGCTCTAGTGTAAGCTTAGAGGCGTCAATCTCTTCAAGAAAGCCGATTCTTTGGAGCCAGACTCAGTACGACAACATACATGGAAACCTCCAGCTTTTCCTAACTTTAAATTAAATACAGATGCAACTATATTTAGAAGTGAAAATCGAGGTGGAATGGGTGCAGTGATACGGGATGAAAGGGGAAATGAGATGTTTACCGTATCCAAACCAATTCCATGGATTACAGGCGTGGTGACTGTGGAAGCAATCACAGTTAGAGATGCGTTGATTATGGCAAGAGAACTGGGATTTTATCAACTGGAAGTAGAAACGGACTCAACGATGGTGATCAACCTCATACATCAAGAACGTCAAAATCAATCGGAGATAGGGCAGATAATCGAAGAAGTAAAGGAATTGGAAAGGACGATGAAGAACTGTACCCACGATCAAATGCCCTAGCTCATTCCTTCCCTAGCAAGACATGCAAGCACTCTGAAGGAGGAGACGATCTGGATGGAAGAAATTCCTGACCCTTCGAGAGCTCTCTACGAAATGGAGAGAAATGAAGTTTGCACTGAAGACAACTTTTATTTTCTTTAATTATTTCTTGTAATCCGATATTCATCAAAAAAAAGAAAAAAAAATCAATCTCAGTCTATCTATAAAATATTAGACATATTCATTAAATCTATGAAATATACTAAAAGAAAAATAGAAAATATCCACCTTCATTGAAGAGAAAATATTTTAAAATAAA

mRNA sequence

CAACAAAGTCCCACTCACCTAGTCCCCTAACTACGTTCTCTCTGTCCAGCTCCTCTCTCTCTCTCCTCTTTCTCTCTCTACCTATCTGCATGGCCTTCGTCTTCTCTCTCTCTCCCTCTGCGGATTAGGGTTCTCTGGTTCCTTCCGCGACCTCCCTTTCTGCATGGTAGATCAAGATTCCCCTCGCTATGCAACTATATTTAGAAGTGAAAATCGAGGTGGAATGGGTGCAGTGATACGGGATGAAAGGGGAAATGAGATGTTTACCGTATCCAAACCAATTCCATGGATTACAGGCGTGGTGACTGTGGAAGCAATCACAGTTAGAGATGCGTTGATTATGGCAAGAGAACTGGGATTTTATCAACTGGAAGTAGAAACGGACTCAACGATGGTGATCAACCTCATACATCAAGAACGTCAAAATCAATCGGAGATAGGGCAGATAATCGAAGAAGTAAAGGAATTGGAAAGGACGATGAAGAACTGTACCCACGATCAAATGCCCTAGCTCATTCCTTCCCTAGCAAGACATGCAAGCACTCTGAAGGAGGAGACGATCTGGATGGAAGAAATTCCTGACCCTTCGAGAGCTCTCTACGAAATGGAGAGAAATGAAGTTTGCACTGAAGACAACTTTTATTTTCTTTAATTATTTCTTGTAATCCGATATTCATCAAAAAAAAGAAAAAAAAATCAATCTCAGTCTATCTATAAAATATTAGACATATTCATTAAATCTATGAAATATACTAAAAGAAAAATAGAAAATATCCACCTTCATTGAAGAGAAAATATTTTAAAATAAA

Coding sequence (CDS)

ATGGTAGATCAAGATTCCCCTCGCTATGCAACTATATTTAGAAGTGAAAATCGAGGTGGAATGGGTGCAGTGATACGGGATGAAAGGGGAAATGAGATGTTTACCGTATCCAAACCAATTCCATGGATTACAGGCGTGGTGACTGTGGAAGCAATCACAGTTAGAGATGCGTTGATTATGGCAAGAGAACTGGGATTTTATCAACTGGAAGTAGAAACGGACTCAACGATGGTGATCAACCTCATACATCAAGAACGTCAAAATCAATCGGAGATAGGGCAGATAATCGAAGAAGTAAAGGAATTGGAAAGGACGATGAAGAACTGTACCCACGATCAAATGCCCTAG

Protein sequence

MVDQDSPRYATIFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNCTHDQMP

Homology

[Close]

BLAST of Tan0015602 vs. NCBI nr
Match: XP_023916941.1 (uncharacterized protein LOC112028476 [Quercus suber])

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-07
Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 12  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEV 71
           +F   +  G+G VIRDE G  +  +S+ IP    V  VEA+  R ALI A+E+  ++ EV
Sbjct: 85  VFEDRSLAGLGIVIRDESGLIIAALSQKIPLPRSVDMVEALDARQALIFAQEISIFKAEV 144

Query: 72  ETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC 110
           E DS  VI  ++  + N++ +G II +++ L   M+ C
Sbjct: 145 EGDSLNVIQALNNPKPNRTLMGHIISDIQCLGAAMQKC 182

[Close]

BLAST of Tan0015602 vs. NCBI nr
Match: XP_030969974.1 (uncharacterized protein LOC115990267 [Quercus lobata])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 12  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEV 71
           IF+  N+ G+G V+RD +G  +  +++ +  +     +EA+ +R A+  A E  F  + +
Sbjct: 28  IFKESNKAGIGVVVRDSQGWVLAALTEKVDGVQDAEVIEALAIRRAIRFAIETSFNCVII 87

Query: 72  ETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC 110
           E+DS  V+  I    +    IG IIE+VK L +TMK+C
Sbjct: 88  ESDSLSVVKAIQDTAEPTCHIGNIIEDVKLLSKTMKSC 125

[Close]

BLAST of Tan0015602 vs. NCBI nr
Match: XP_023899902.1 (uncharacterized protein LOC112011793 [Quercus suber])

HSP 1 Score: 64.7 bits (156), Expect = 6.0e-07
Identity = 33/89 (37.08%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 12  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEV 71
           +F      G+G +IR+++G  M  +S+ IP +  +  VE I  R AL+ A+ELGF ++EV
Sbjct: 40  LFSQAELAGIGVIIRNDQGLAMAALSQQIPSLASMEMVEVIAARRALMFAKELGFDKVEV 99

Query: 72  ETDSTMVINLIHQERQNQSEIGQIIEEVK 101
           E DS  V+N I  +  + S +G ++++VK
Sbjct: 100 EGDSETVVNAILGDYMDNSFMGHVLQDVK 128

[Close]

BLAST of Tan0015602 vs. NCBI nr
Match: XP_030925021.1 (uncharacterized protein LOC115952076 [Quercus lobata])

HSP 1 Score: 64.3 bits (155), Expect = 7.8e-07
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 12  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEV 71
           IF +++   +G V+RD+ G  + T+S+ IP  T V TVE I  R AL  A+ELGF ++ V
Sbjct: 10  IFSTQSSASLGMVVRDQAGLVLATLSQKIPMPTSVETVEVIAARRALEFAKELGFERIMV 69

Query: 72  ETDSTMVINLIHQERQNQSEIGQIIEEVKEL 103
           E D  ++I  I ++    S +G I+E++  L
Sbjct: 70  EGDFEIIIKTIREKTLLSSVLGHILEDIHVL 100

[Close]

BLAST of Tan0015602 vs. NCBI nr
Match: XP_030964152.1 (uncharacterized protein LOC115985344 [Quercus lobata])

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-06
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 10  ATIFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQL 69
           A  FR+ N  G+G ++RD  G  +  +S PIP    V  VEA+  R A+  A E+G  ++
Sbjct: 100 AATFRTTNSAGIGVIVRDCAGEVIGALSMPIPMPQSVAAVEALACRRAVKFAAEIGLTRV 159

Query: 70  EVETDSTMVINLIHQERQNQSEIGQIIEEV 100
             E DS +VIN I   + +Q+  G +IE++
Sbjct: 160 VFEGDSAVVINAISSTKGDQTSYGNVIEDI 189

[Close]

BLAST of Tan0015602 vs. ExPASy TrEMBL
Match: A0A7N2KZZ0 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.0e-09
Identity = 36/97 (37.11%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 12  IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEV 71
           IF +++  G+  V+RD+ G  + ++S+ IP  T V  VE I  R AL++ARELGF ++ V
Sbjct: 167 IFSTQSSAGLAMVVRDQAGLVLASLSQKIPLSTSVEIVEVIAARRALLLARELGFERVMV 226

Query: 72  ETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKN 109
           E DS ++I  I ++    S++G I+E+++ L R+  +
Sbjct: 227 EGDSEIIIKAIKEKALPSSDLGHILEDIRVLSRSFNS 263

[Close]

BLAST of Tan0015602 vs. ExPASy TrEMBL
Match: A0A7N2N1F3 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-08
Identity = 34/100 (34.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 10  ATIFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQL 69
           A +F++ +  G+G +IRD +G+ +  +S P P  T V  +EA+  R A++ A+E+G  Q+
Sbjct: 69  AAVFKASSSAGIGVIIRDNKGDAIGALSVPTPLSTSVAAMEALACRRAVLFAKEIGLRQV 128

Query: 70  EVETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC 110
             E DS MVI  + Q     +E G II++++ L      C
Sbjct: 129 LFEGDSAMVIQALIQGDSASAEYGNIIDDIRALAADFDFC 168

[Close]

BLAST of Tan0015602 vs. ExPASy TrEMBL
Match: A0A2N9EUT1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6520 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.9e-08
Identity = 33/98 (33.67%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 12   IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEV 71
            +F      G+G VIRDE G  M ++S+ +P+      VEA+ +R A+ +A E+GFY + V
Sbjct: 1481 VFLETMEAGLGVVIRDELGRPMVSLSQKVPFPGSSTAVEALALRRAMFLAIEMGFYSVIV 1540

Query: 72   ETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC 110
            E DS M++  +     + +  G ++E+V+ L + M +C
Sbjct: 1541 EGDSEMLVRAVTSLGGSATVYGHVVEDVQYLTQQMTHC 1578

[Close]

BLAST of Tan0015602 vs. ExPASy TrEMBL
Match: A0A2N9I6L8 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49538 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.9e-08
Identity = 33/98 (33.67%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 12   IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEV 71
            +F      G+G VIRDE G  M ++S+ +P+      VEA+ +R A+ +A E+GFY + V
Sbjct: 1403 VFLETMEAGLGVVIRDELGRPMVSLSQKVPFPGSSTAVEALALRRAMFLAIEMGFYSVIV 1462

Query: 72   ETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC 110
            E DS M++  +     + +  G ++E+V+ L + M +C
Sbjct: 1463 EGDSEMLVRAVTSLGGSATVYGHVVEDVQYLTQQMTHC 1500

[Close]

BLAST of Tan0015602 vs. ExPASy TrEMBL
Match: A0A2N9HKV4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40213 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.9e-08
Identity = 33/98 (33.67%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 12   IFRSENRGGMGAVIRDERGNEMFTVSKPIPWITGVVTVEAITVRDALIMARELGFYQLEV 71
            +F      G+G VIRDE G  M ++S+ +P+      VEA+ +R A+ +A E+GFY + V
Sbjct: 1471 VFLETMEAGLGVVIRDELGRPMVSLSQKVPFPGSSTAVEALALRRAMFLAIEMGFYSVIV 1530

Query: 72   ETDSTMVINLIHQERQNQSEIGQIIEEVKELERTMKNC 110
            E DS M++  +     + +  G ++E+V+ L + M +C
Sbjct: 1531 EGDSEMLVRAVTSLGGSATVYGHVVEDVQYLTQQMTHC 1568

The following BLAST results are available for this feature:

BLAST of Tan0015602 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0015602 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023916941.1	2.1e-07	36.73	uncharacterized protein LOC112028476 [Quercus suber]	[more]
XP_030969974.1	2.7e-07	33.67	uncharacterized protein LOC115990267 [Quercus lobata]	[more]
XP_023899902.1	6.0e-07	37.08	uncharacterized protein LOC112011793 [Quercus suber]	[more]
XP_030925021.1	7.8e-07	38.46	uncharacterized protein LOC115952076 [Quercus lobata]	[more]
XP_030964152.1	1.0e-06	36.67	uncharacterized protein LOC115985344 [Quercus lobata]	[more]

BLAST of Tan0015602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2KZZ0	4.0e-09	37.11	RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2N1F3	3.4e-08	34.00	RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2N9EUT1	9.9e-08	33.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6520 PE=4 SV=1	[more]
A0A2N9I6L8	9.9e-08	33.67	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9HKV4	9.9e-08	33.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40213 PE=4 SV=1	[more]

BLAST of Tan0015602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..90 e-value: 2.3E-14 score: 53.2
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..95 e-value: 1.2E-8 score: 37.1
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015602.1	Tan0015602.1	mRNA
Tan0015602.2	Tan0015602.2	mRNA
Tan0015602.3	Tan0015602.3	mRNA
Tan0015602.4	Tan0015602.4	mRNA
Tan0015602.5	Tan0015602.5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity