Tan0015476 (gene) Snake gourd v1

Overview
NameTan0015476
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLEA_2 domain-containing protein
LocationLG04: 85922112 .. 85922675 (+)
RNA-Seq ExpressionTan0015476
SyntenyTan0015476
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTATTTTTCTCCATTTCACATTCTTTTTAAGCTAAATAACAAATAAAGAATAAATATTACCCCCAAATTTCAAATCCCTCTGTTTTTCTCTTCAATGGATTTGAGTTGTTTAATTAGGTGCTCCGGCGGCGGCGGGCGTGGGTACGTGAAAAGAGGGCAGTACACGGCGGTGGCAGTGGCGGTTTTGGGGCGCAGGTCGCCGGAGAAGACGACGGCGAGATGGAGAGTTCTGTGGCGGAGGCTAAAGAAGGAGAAGAAGAGAATGTTCAGCTGCGGTTCGAGCGGAACACGTGAGGCGCACGTGCCGTATAATCCAGAGACGTATTTGCAGAACTTCGATGAAAGCTCGGAGATGATGATCGGAGACGATCCTGACGCGATTTCTCGATCTTTCTCAGCTCGTTTCGCCATTTCTTCTTCAGTCATTTTGAAACGGCCGCCTGAATTTTTGGTTCAAAAGGTTAAAGTTTAGTGAATTTGTTCTTCAAAAGAAGTTTGTGTTAATTACAGACTCTGTTTATAAATGTCAGAAATCAGAATGGTTTCTTTTTTTCCTTTCTCC

mRNA sequence

CTTTATTTTTCTCCATTTCACATTCTTTTTAAGCTAAATAACAAATAAAGAATAAATATTACCCCCAAATTTCAAATCCCTCTGTTTTTCTCTTCAATGGATTTGAGTTGTTTAATTAGGTGCTCCGGCGGCGGCGGGCGTGGGTACGTGAAAAGAGGGCAGTACACGGCGGTGGCAGTGGCGGTTTTGGGGCGCAGGTCGCCGGAGAAGACGACGGCGAGATGGAGAGTTCTGTGGCGGAGGCTAAAGAAGGAGAAGAAGAGAATGTTCAGCTGCGGTTCGAGCGGAACACGTGAGGCGCACGTGCCGTATAATCCAGAGACGTATTTGCAGAACTTCGATGAAAGCTCGGAGATGATGATCGGAGACGATCCTGACGCGATTTCTCGATCTTTCTCAGCTCGTTTCGCCATTTCTTCTTCAGTCATTTTGAAACGGCCGCCTGAATTTTTGGTTCAAAAGGTTAAAGTTTAGTGAATTTGTTCTTCAAAAGAAGTTTGTGTTAATTACAGACTCTGTTTATAAATGTCAGAAATCAGAATGGTTTCTTTTTTTCCTTTCTCC

Coding sequence (CDS)

ATGGATTTGAGTTGTTTAATTAGGTGCTCCGGCGGCGGCGGGCGTGGGTACGTGAAAAGAGGGCAGTACACGGCGGTGGCAGTGGCGGTTTTGGGGCGCAGGTCGCCGGAGAAGACGACGGCGAGATGGAGAGTTCTGTGGCGGAGGCTAAAGAAGGAGAAGAAGAGAATGTTCAGCTGCGGTTCGAGCGGAACACGTGAGGCGCACGTGCCGTATAATCCAGAGACGTATTTGCAGAACTTCGATGAAAGCTCGGAGATGATGATCGGAGACGATCCTGACGCGATTTCTCGATCTTTCTCAGCTCGTTTCGCCATTTCTTCTTCAGTCATTTTGAAACGGCCGCCTGAATTTTTGGTTCAAAAGGTTAAAGTTTAG

Protein sequence

MDLSCLIRCSGGGGRGYVKRGQYTAVAVAVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPYNPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILKRPPEFLVQKVKV
Homology
BLAST of Tan0015476 vs. NCBI nr
Match: KAG7036482.1 (hypothetical protein SDJN02_00099, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 88/124 (70.97%), Postives = 101/124 (81.45%), Query Frame = 0

Query: 1   MDLSCLIRCSGGGGRGYVKRGQYTAVAVAVLGRRSPEKTTARWRVLWRRLKKEKKRMFSC 60
           M+LSCL     GGG GYV+RG Y+AV VAVL     EKTTARWRV+WRRLKKEKKRMF C
Sbjct: 1   MNLSCL--RGAGGGIGYVERGYYSAVTVAVL-----EKTTARWRVVWRRLKKEKKRMFRC 60

Query: 61  GSSGTREAHVPYNPETYLQNFDESSEMMIG-DDPDAISRSFSARFAISSSVILKRPPEFL 120
           G SG RE HVPYNP+TYLQNFD+ S MM+G DDPDAISRSFSARFAISS+++ + PPEF+
Sbjct: 61  GMSGAREVHVPYNPKTYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRRPPPEFV 117

Query: 121 VQKV 124
           V K+
Sbjct: 121 VLKL 117

BLAST of Tan0015476 vs. NCBI nr
Match: KAG6606769.1 (hypothetical protein SDJN03_00111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 88/126 (69.84%), Postives = 102/126 (80.95%), Query Frame = 0

Query: 1   MDLSCLIRCSGGGGRGYVKRGQYTAVAVAVLGRRSPEKTTARWRVLWRRLKKEKKRMFSC 60
           M+LSCL     GGG GYV+RG Y+AV VAVL     EKTT+RWRV+WRRLKKEKKRMF C
Sbjct: 1   MNLSCL--RGAGGGIGYVERGYYSAVTVAVL-----EKTTSRWRVVWRRLKKEKKRMFRC 60

Query: 61  GSSGTREAHVPYNPETYLQNFDESSEMMIG-DDPDAISRSFSARFAISSSVILKRPPEFL 120
           G SG RE HVPYNP+TYLQNFD+ S MM+G DDPDAISRSFSARFAISS+++ + PPEF+
Sbjct: 61  GMSGAREVHVPYNPKTYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRRPPPEFV 119

Query: 121 VQKVKV 126
           V K+ V
Sbjct: 121 VLKLTV 119

BLAST of Tan0015476 vs. NCBI nr
Match: GAY51209.1 (hypothetical protein CUMW_132530 [Citrus unshiu])

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-14
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 15  RGYVKRGQYTAVAV--AVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPY 74
           + YVKRG    ++    + G ++P     RWR+LWR++K++KKR+F C S GT + HVPY
Sbjct: 59  QSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKRDKKRIFDCSSGGT-DVHVPY 118

Query: 75  NPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           +P TY QNFD+     +  DPD  SRSFSARFA+ S V  K
Sbjct: 119 DPYTYSQNFDQG---YVWADPDNASRSFSARFAVPSRVFQK 150

BLAST of Tan0015476 vs. NCBI nr
Match: KDO51221.1 (hypothetical protein CISIN_1g044132mg [Citrus sinensis])

HSP 1 Score: 87.4 bits (215), Expect = 9.3e-14
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 15  RGYVKRGQYTAVAV--AVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPY 74
           + YVKRG    ++    + G ++P     RWR+LWR++K+EKKR+F C SSG+   HVPY
Sbjct: 59  QSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKREKKRIFDC-SSGSTNVHVPY 118

Query: 75  NPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           +P TY QNFD+     +  DPD  SRSFSARFA+ S V  K
Sbjct: 119 DPCTYSQNFDQG---YVWADPDNASRSFSARFAVPSRVFQK 150

BLAST of Tan0015476 vs. NCBI nr
Match: XP_031250243.1 (uncharacterized protein LOC116108094 [Pistacia vera])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 48/97 (49.48%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 17  YVKRGQYTAVAVAVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPYNPET 76
           Y+KRG Y  + +++ G  S    T RWRVLWR++ +EKK +F C SS     H PY+P T
Sbjct: 11  YLKRG-YDRINISLNGLVS-GSGTPRWRVLWRKIMREKKGIFDCSSSSCTRVHEPYDPLT 70

Query: 77  YLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           Y QNFD+   M   +DPD +SRSFSARFA+ S V  K
Sbjct: 71  YSQNFDDQGFMW--EDPDNVSRSFSARFAVPSRVFEK 103

BLAST of Tan0015476 vs. ExPASy TrEMBL
Match: A0A2H5PFR9 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_132530 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-14
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 15  RGYVKRGQYTAVAV--AVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPY 74
           + YVKRG    ++    + G ++P     RWR+LWR++K++KKR+F C S GT + HVPY
Sbjct: 59  QSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKRDKKRIFDCSSGGT-DVHVPY 118

Query: 75  NPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           +P TY QNFD+     +  DPD  SRSFSARFA+ S V  K
Sbjct: 119 DPYTYSQNFDQG---YVWADPDNASRSFSARFAVPSRVFQK 150

BLAST of Tan0015476 vs. ExPASy TrEMBL
Match: A0A067EJZ4 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044132mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.5e-14
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 15  RGYVKRGQYTAVAV--AVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPY 74
           + YVKRG    ++    + G ++P     RWR+LWR++K+EKKR+F C SSG+   HVPY
Sbjct: 59  QSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKREKKRIFDC-SSGSTNVHVPY 118

Query: 75  NPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           +P TY QNFD+     +  DPD  SRSFSARFA+ S V  K
Sbjct: 119 DPCTYSQNFDQG---YVWADPDNASRSFSARFAVPSRVFQK 150

BLAST of Tan0015476 vs. ExPASy TrEMBL
Match: B9RQR2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1495350 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 17  YVKRGQYTAVAVA---VLGRRSPEKTTA---RWRVLWRRLKKEKKRMFSCGSSGTREAHV 76
           YVK  +Y  + V+   ++G  S    TA   RWR+LWR++ KEKK++F C SS  R  H 
Sbjct: 19  YVKSQRYDRIDVSFNMLVGHESKTANTAATPRWRLLWRKIMKEKKKLFDCSSSSDR-MHF 78

Query: 77  PYNPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
            Y+P TY QNFD+ S M    DPD++SRSFSARFA+ + +  K
Sbjct: 79  SYDPYTYAQNFDQGSSMW--SDPDSMSRSFSARFAVPARIFDK 118

BLAST of Tan0015476 vs. ExPASy TrEMBL
Match: V4ST02 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026796mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-13
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 15  RGYVKRGQYTAVAV--AVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPY 74
           + YV+RG    ++    + G ++P     RWR+LWR++K+EK+R+F C SSG+   HVPY
Sbjct: 18  QSYVRRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKREKERIFDC-SSGSTNVHVPY 77

Query: 75  NPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           +P TY QNFD+     +  DPD  SRSFSARFA+ S V  K
Sbjct: 78  DPYTYSQNFDQG---YVWADPDNASRSFSARFAVPSRVFQK 109

BLAST of Tan0015476 vs. ExPASy TrEMBL
Match: A0A6P3YT23 (uncharacterized protein LOC107404700 OS=Ziziphus jujuba OX=326968 GN=LOC107404700 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-13
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query: 15  RGYVKRGQY-TAVAVAVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPYN 74
           R YV+R  Y ++V+   +   S      RWR+LW ++KKEKKR+F C  S     H+PY+
Sbjct: 18  RNYVRRSGYGSSVSFGAVAASSKMIVMPRWRMLWIKIKKEKKRLFDC--STYTPVHLPYD 77

Query: 75  PETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           P TY QNFD+ S      DPD +SRSFSARFA+ S ++ K
Sbjct: 78  PYTYAQNFDQGSNWA---DPDNLSRSFSARFAVPSRILKK 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7036482.12.4e-3870.97hypothetical protein SDJN02_00099, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6606769.12.4e-3869.84hypothetical protein SDJN03_00111, partial [Cucurbita argyrosperma subsp. sorori... [more]
GAY51209.14.2e-1447.52hypothetical protein CUMW_132530 [Citrus unshiu][more]
KDO51221.19.3e-1448.51hypothetical protein CISIN_1g044132mg [Citrus sinensis][more]
XP_031250243.11.2e-1349.48uncharacterized protein LOC116108094 [Pistacia vera][more]
Match NameE-valueIdentityDescription
A0A2H5PFR92.0e-1447.52Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_132530 PE=4 SV=1[more]
A0A067EJZ44.5e-1448.51Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044132mg PE=4 SV=1[more]
B9RQR21.3e-1346.60Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1495350 PE=4 SV=1[more]
V4ST021.7e-1346.53Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026796mg PE=4 ... [more]
A0A6P3YT233.8e-1346.00uncharacterized protein LOC107404700 OS=Ziziphus jujuba OX=326968 GN=LOC10740470... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 37..110
NoneNo IPR availablePANTHERPTHR33168:SF70OS01G0182300 PROTEINcoord: 37..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0015476.1Tan0015476.1mRNA