Tan0015476 (gene) Snake gourd v1

Overview


Name	Tan0015476
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	LEA_2 domain-containing protein
Location	LG04: 85922112 .. 85922675 (+)
RNA-Seq Expression	Tan0015476
Synteny	Tan0015476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTATTTTTCTCCATTTCACATTCTTTTTAAGCTAAATAACAAATAAAGAATAAATATTACCCCCAAATTTCAAATCCCTCTGTTTTTCTCTTCAATGGATTTGAGTTGTTTAATTAGGTGCTCCGGCGGCGGCGGGCGTGGGTACGTGAAAAGAGGGCAGTACACGGCGGTGGCAGTGGCGGTTTTGGGGCGCAGGTCGCCGGAGAAGACGACGGCGAGATGGAGAGTTCTGTGGCGGAGGCTAAAGAAGGAGAAGAAGAGAATGTTCAGCTGCGGTTCGAGCGGAACACGTGAGGCGCACGTGCCGTATAATCCAGAGACGTATTTGCAGAACTTCGATGAAAGCTCGGAGATGATGATCGGAGACGATCCTGACGCGATTTCTCGATCTTTCTCAGCTCGTTTCGCCATTTCTTCTTCAGTCATTTTGAAACGGCCGCCTGAATTTTTGGTTCAAAAGGTTAAAGTTTAGTGAATTTGTTCTTCAAAAGAAGTTTGTGTTAATTACAGACTCTGTTTATAAATGTCAGAAATCAGAATGGTTTCTTTTTTTCCTTTCTCC

mRNA sequence

CTTTATTTTTCTCCATTTCACATTCTTTTTAAGCTAAATAACAAATAAAGAATAAATATTACCCCCAAATTTCAAATCCCTCTGTTTTTCTCTTCAATGGATTTGAGTTGTTTAATTAGGTGCTCCGGCGGCGGCGGGCGTGGGTACGTGAAAAGAGGGCAGTACACGGCGGTGGCAGTGGCGGTTTTGGGGCGCAGGTCGCCGGAGAAGACGACGGCGAGATGGAGAGTTCTGTGGCGGAGGCTAAAGAAGGAGAAGAAGAGAATGTTCAGCTGCGGTTCGAGCGGAACACGTGAGGCGCACGTGCCGTATAATCCAGAGACGTATTTGCAGAACTTCGATGAAAGCTCGGAGATGATGATCGGAGACGATCCTGACGCGATTTCTCGATCTTTCTCAGCTCGTTTCGCCATTTCTTCTTCAGTCATTTTGAAACGGCCGCCTGAATTTTTGGTTCAAAAGGTTAAAGTTTAGTGAATTTGTTCTTCAAAAGAAGTTTGTGTTAATTACAGACTCTGTTTATAAATGTCAGAAATCAGAATGGTTTCTTTTTTTCCTTTCTCC

Coding sequence (CDS)

ATGGATTTGAGTTGTTTAATTAGGTGCTCCGGCGGCGGCGGGCGTGGGTACGTGAAAAGAGGGCAGTACACGGCGGTGGCAGTGGCGGTTTTGGGGCGCAGGTCGCCGGAGAAGACGACGGCGAGATGGAGAGTTCTGTGGCGGAGGCTAAAGAAGGAGAAGAAGAGAATGTTCAGCTGCGGTTCGAGCGGAACACGTGAGGCGCACGTGCCGTATAATCCAGAGACGTATTTGCAGAACTTCGATGAAAGCTCGGAGATGATGATCGGAGACGATCCTGACGCGATTTCTCGATCTTTCTCAGCTCGTTTCGCCATTTCTTCTTCAGTCATTTTGAAACGGCCGCCTGAATTTTTGGTTCAAAAGGTTAAAGTTTAG

Protein sequence

MDLSCLIRCSGGGGRGYVKRGQYTAVAVAVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPYNPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILKRPPEFLVQKVKV

Homology

[Close]

BLAST of Tan0015476 vs. NCBI nr
Match: KAG7036482.1 (hypothetical protein SDJN02_00099, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 88/124 (70.97%), Postives = 101/124 (81.45%), Query Frame = 0


Query: 1   MDLSCLIRCSGGGGRGYVKRGQYTAVAVAVLGRRSPEKTTARWRVLWRRLKKEKKRMFSC 60
           M+LSCL     GGG GYV+RG Y+AV VAVL     EKTTARWRV+WRRLKKEKKRMF C
Sbjct: 1   MNLSCL--RGAGGGIGYVERGYYSAVTVAVL-----EKTTARWRVVWRRLKKEKKRMFRC 60

Query: 61  GSSGTREAHVPYNPETYLQNFDESSEMMIG-DDPDAISRSFSARFAISSSVILKRPPEFL 120
           G SG RE HVPYNP+TYLQNFD+ S MM+G DDPDAISRSFSARFAISS+++ + PPEF+
Sbjct: 61  GMSGAREVHVPYNPKTYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRRPPPEFV 117

Query: 121 VQKV 124
           V K+
Sbjct: 121 VLKL 117

[Close]

BLAST of Tan0015476 vs. NCBI nr
Match: KAG6606769.1 (hypothetical protein SDJN03_00111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 88/126 (69.84%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MDLSCLIRCSGGGGRGYVKRGQYTAVAVAVLGRRSPEKTTARWRVLWRRLKKEKKRMFSC 60
           M+LSCL     GGG GYV+RG Y+AV VAVL     EKTT+RWRV+WRRLKKEKKRMF C
Sbjct: 1   MNLSCL--RGAGGGIGYVERGYYSAVTVAVL-----EKTTSRWRVVWRRLKKEKKRMFRC 60

Query: 61  GSSGTREAHVPYNPETYLQNFDESSEMMIG-DDPDAISRSFSARFAISSSVILKRPPEFL 120
           G SG RE HVPYNP+TYLQNFD+ S MM+G DDPDAISRSFSARFAISS+++ + PPEF+
Sbjct: 61  GMSGAREVHVPYNPKTYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRRPPPEFV 119

Query: 121 VQKVKV 126
           V K+ V
Sbjct: 121 VLKLTV 119

[Close]

BLAST of Tan0015476 vs. NCBI nr
Match: GAY51209.1 (hypothetical protein CUMW_132530 [Citrus unshiu])

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-14
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 15  RGYVKRGQYTAVAV--AVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPY 74
           + YVKRG    ++    + G ++P     RWR+LWR++K++KKR+F C S GT + HVPY
Sbjct: 59  QSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKRDKKRIFDCSSGGT-DVHVPY 118

Query: 75  NPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           +P TY QNFD+     +  DPD  SRSFSARFA+ S V  K
Sbjct: 119 DPYTYSQNFDQG---YVWADPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Tan0015476 vs. NCBI nr
Match: KDO51221.1 (hypothetical protein CISIN_1g044132mg [Citrus sinensis])

HSP 1 Score: 87.4 bits (215), Expect = 9.3e-14
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 15  RGYVKRGQYTAVAV--AVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPY 74
           + YVKRG    ++    + G ++P     RWR+LWR++K+EKKR+F C SSG+   HVPY
Sbjct: 59  QSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKREKKRIFDC-SSGSTNVHVPY 118

Query: 75  NPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           +P TY QNFD+     +  DPD  SRSFSARFA+ S V  K
Sbjct: 119 DPCTYSQNFDQG---YVWADPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Tan0015476 vs. NCBI nr
Match: XP_031250243.1 (uncharacterized protein LOC116108094 [Pistacia vera])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 48/97 (49.48%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 17  YVKRGQYTAVAVAVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPYNPET 76
           Y+KRG Y  + +++ G  S    T RWRVLWR++ +EKK +F C SS     H PY+P T
Sbjct: 11  YLKRG-YDRINISLNGLVS-GSGTPRWRVLWRKIMREKKGIFDCSSSSCTRVHEPYDPLT 70

Query: 77  YLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           Y QNFD+   M   +DPD +SRSFSARFA+ S V  K
Sbjct: 71  YSQNFDDQGFMW--EDPDNVSRSFSARFAVPSRVFEK 103

[Close]

BLAST of Tan0015476 vs. ExPASy TrEMBL
Match: A0A2H5PFR9 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_132530 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-14
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 15  RGYVKRGQYTAVAV--AVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPY 74
           + YVKRG    ++    + G ++P     RWR+LWR++K++KKR+F C S GT + HVPY
Sbjct: 59  QSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKRDKKRIFDCSSGGT-DVHVPY 118

Query: 75  NPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           +P TY QNFD+     +  DPD  SRSFSARFA+ S V  K
Sbjct: 119 DPYTYSQNFDQG---YVWADPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Tan0015476 vs. ExPASy TrEMBL
Match: A0A067EJZ4 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044132mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.5e-14
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 15  RGYVKRGQYTAVAV--AVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPY 74
           + YVKRG    ++    + G ++P     RWR+LWR++K+EKKR+F C SSG+   HVPY
Sbjct: 59  QSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKREKKRIFDC-SSGSTNVHVPY 118

Query: 75  NPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           +P TY QNFD+     +  DPD  SRSFSARFA+ S V  K
Sbjct: 119 DPCTYSQNFDQG---YVWADPDNASRSFSARFAVPSRVFQK 150

[Close]

BLAST of Tan0015476 vs. ExPASy TrEMBL
Match: B9RQR2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1495350 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 17  YVKRGQYTAVAVA---VLGRRSPEKTTA---RWRVLWRRLKKEKKRMFSCGSSGTREAHV 76
           YVK  +Y  + V+   ++G  S    TA   RWR+LWR++ KEKK++F C SS  R  H 
Sbjct: 19  YVKSQRYDRIDVSFNMLVGHESKTANTAATPRWRLLWRKIMKEKKKLFDCSSSSDR-MHF 78

Query: 77  PYNPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
            Y+P TY QNFD+ S M    DPD++SRSFSARFA+ + +  K
Sbjct: 79  SYDPYTYAQNFDQGSSMW--SDPDSMSRSFSARFAVPARIFDK 118

[Close]

BLAST of Tan0015476 vs. ExPASy TrEMBL
Match: V4ST02 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026796mg PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-13
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 15  RGYVKRGQYTAVAV--AVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPY 74
           + YV+RG    ++    + G ++P     RWR+LWR++K+EK+R+F C SSG+   HVPY
Sbjct: 18  QSYVRRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKREKERIFDC-SSGSTNVHVPY 77

Query: 75  NPETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           +P TY QNFD+     +  DPD  SRSFSARFA+ S V  K
Sbjct: 78  DPYTYSQNFDQG---YVWADPDNASRSFSARFAVPSRVFQK 109

[Close]

BLAST of Tan0015476 vs. ExPASy TrEMBL
Match: A0A6P3YT23 (uncharacterized protein LOC107404700 OS=Ziziphus jujuba OX=326968 GN=LOC107404700 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-13
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 15  RGYVKRGQY-TAVAVAVLGRRSPEKTTARWRVLWRRLKKEKKRMFSCGSSGTREAHVPYN 74
           R YV+R  Y ++V+   +   S      RWR+LW ++KKEKKR+F C  S     H+PY+
Sbjct: 18  RNYVRRSGYGSSVSFGAVAASSKMIVMPRWRMLWIKIKKEKKRLFDC--STYTPVHLPYD 77

Query: 75  PETYLQNFDESSEMMIGDDPDAISRSFSARFAISSSVILK 114
           P TY QNFD+ S      DPD +SRSFSARFA+ S ++ K
Sbjct: 78  PYTYAQNFDQGSNWA---DPDNLSRSFSARFAVPSRILKK 112

The following BLAST results are available for this feature:

BLAST of Tan0015476 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0015476 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036482.1	2.4e-38	70.97	hypothetical protein SDJN02_00099, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6606769.1	2.4e-38	69.84	hypothetical protein SDJN03_00111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
GAY51209.1	4.2e-14	47.52	hypothetical protein CUMW_132530 [Citrus unshiu]	[more]
KDO51221.1	9.3e-14	48.51	hypothetical protein CISIN_1g044132mg [Citrus sinensis]	[more]
XP_031250243.1	1.2e-13	49.48	uncharacterized protein LOC116108094 [Pistacia vera]	[more]

BLAST of Tan0015476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H5PFR9	2.0e-14	47.52	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_132530 PE=4 SV=1	[more]
A0A067EJZ4	4.5e-14	48.51	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044132mg PE=4 SV=1	[more]
B9RQR2	1.3e-13	46.60	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1495350 PE=4 SV=1	[more]
V4ST02	1.7e-13	46.53	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026796mg PE=4 ...	[more]
A0A6P3YT23	3.8e-13	46.00	uncharacterized protein LOC107404700 OS=Ziziphus jujuba OX=326968 GN=LOC10740470...	[more]

BLAST of Tan0015476 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 37..110
None	No IPR available	PANTHER	PTHR33168:SF70	OS01G0182300 PROTEIN	coord: 37..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015476.1	Tan0015476.1	mRNA