Tan0015395 (gene) Snake gourd v1

Overview
NameTan0015395
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L16, chloroplastic
LocationContig00124: 273273 .. 274286 (-)
RNA-Seq ExpressionTan0015395
SyntenyTan0015395
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCGGGTCTGAGCTGCCTGCGGTTACAGAATCGCCCGCGGAAGCCCCCTGACTCTCTCTCTATAAAAAAAGCTCTGCATCATCACTGGCGCAGGTTTTATTAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTGAGCCAGGATCAAACTCTGATTTTGAGTATGATTGGGCCCTGCTGTGGTAGAACCTGGTGAACCGGGCGTACTACTGAGGATTGATTCTCTCTCTGAACTATGTAGTACGTTATATATTCTTTCTAGCAACTCAATCAAAATCAAAGCAAACTTATTGCATCAACAACCGGGAAATTCACCGGTCCTACCTACTAACGCTAATAAGGTTGAAAGAAAGGATGCGTCGAGCAAGCAGCGCGACCCCAGTTCTACTTAACTAAGCCCCGTGCTTGTACAAGGAGGAAGCCAATCCCACCAACTTGAATGACTTTTTTTTATTAGTATACCCTTTGCTTTTAACATGGACGAAGGAGCGAAGCTGCTTTCCCGATGAAAGAGGGGCAGGAGCTGGATGAGAAGAAACTCTCATGTCCGGTTCTGTAGTAGAGATGGAATTGAGAAATAACCATCAACTATAACCCCAAAAGAACCAGATTTCGTAAACACCATAGAGGAAGAATGAAAGGGATGTCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCGAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAA

mRNA sequence

ATGTTGTCGGAAATAACCATCAACTATAACCCCAAAAGAACCAGATTTCGTAAACACCATAGAGGAAGAATGAAAGGGATGTCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCGAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAA

Coding sequence (CDS)

ATGTTGTCGGAAATAACCATCAACTATAACCCCAAAAGAACCAGATTTCGTAAACACCATAGAGGAAGAATGAAAGGGATGTCTTATCGAGGCAATCGTATTTGCTTCGGTAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAAGCTATTTCAATAGCGGCGTCGAAAATGCCTATACGAACCCAATTCATTACTTCGGGATAA

Protein sequence

MLSEITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFITSG
Homology
[Close]
BLAST of Tan0015395 vs. ExPASy Swiss-Prot
Match: Q4VZN1 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 2.9e-70
Identity = 129/133 (96.99%), Postives = 131/133 (98.50%), Query Frame = 0 

Query: 10  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 69
           +PKRTRFRKHHRGRMKG+SYRGN ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG
Sbjct: 3   SPKRTRFRKHHRGRMKGISYRGNSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 62

Query: 70  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 129
           KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKAISIAA
Sbjct: 63  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 122

Query: 130 SKMPIRTQFITSG 143
           SKMPIRTQFITSG
Sbjct: 123 SKMPIRTQFITSG 135

[Close]
BLAST of Tan0015395 vs. ExPASy Swiss-Prot
Match: B1NWI7 (50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-69
Identity = 126/133 (94.74%), Postives = 131/133 (98.50%), Query Frame = 0 

Query: 10  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 69
           +PKRTRFRK HRGRMKG+++RGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGG
Sbjct: 3   SPKRTRFRKQHRGRMKGIAFRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGG 62

Query: 70  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 129
           KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA
Sbjct: 63  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 122

Query: 130 SKMPIRTQFITSG 143
           SKMPIRTQFI SG
Sbjct: 123 SKMPIRTQFIISG 135

[Close]
BLAST of Tan0015395 vs. ExPASy Swiss-Prot
Match: Q0ZIY1 (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-69
Identity = 126/133 (94.74%), Postives = 130/133 (97.74%), Query Frame = 0 

Query: 10  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 69
           +PKRTRFRK HRGRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGG
Sbjct: 3   SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGG 62

Query: 70  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 129
           KIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA
Sbjct: 63  KIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 122

Query: 130 SKMPIRTQFITSG 143
           SKMPIRTQFI SG
Sbjct: 123 SKMPIRTQFIISG 135

[Close]
BLAST of Tan0015395 vs. ExPASy Swiss-Prot
Match: Q09ME0 (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68
Identity = 126/133 (94.74%), Postives = 128/133 (96.24%), Query Frame = 0 

Query: 10  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 69
           NPKRTRFRK HRGRMKG+SYRGN ICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGG
Sbjct: 4   NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGG 63

Query: 70  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 129
           KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKAISIAA
Sbjct: 64  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAA 123

Query: 130 SKMPIRTQFITSG 143
           SKMPIRTQFI SG
Sbjct: 124 SKMPIRTQFIISG 136

[Close]
BLAST of Tan0015395 vs. ExPASy Swiss-Prot
Match: Q49KW1 (50S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68
Identity = 125/133 (93.98%), Postives = 130/133 (97.74%), Query Frame = 0 

Query: 10  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 69
           +PKRTRFRK HRGRMKG+SYRGNRICFG+YA+QALEPAWITSRQIEAGRRAMTRN RRGG
Sbjct: 3   SPKRTRFRKQHRGRMKGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGG 62

Query: 70  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 129
           KIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA
Sbjct: 63  KIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 122

Query: 130 SKMPIRTQFITSG 143
           SKMPIRTQFI SG
Sbjct: 123 SKMPIRTQFIISG 135

[Close]
BLAST of Tan0015395 vs. NCBI nr
Match: YP_009560873.1 (ribosomal protein L16 [Trichosanthes kirilowii] >QAB33224.1 ribosomal protein L16 [Trichosanthes kirilowii])

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-71
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 7   INYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 66
           +NYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 1   MNYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 60

Query: 67  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAIS 126
           RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAIS
Sbjct: 61  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAIS 120

Query: 127 IAASKMPIRTQFITSG 143
           IAASKMPIRTQFITSG
Sbjct: 121 IAASKMPIRTQFITSG 136

[Close]
BLAST of Tan0015395 vs. NCBI nr
Match: QJR52995.1 (50S ribosomal protein L16 [Herpetospermum pedunculosum])

HSP 1 Score: 278.1 bits (710), Expect = 4.2e-71
Identity = 134/137 (97.81%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 5   ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN 64
           +TINYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN
Sbjct: 1   MTINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN 60

Query: 65  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA 124
           ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA
Sbjct: 61  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA 120

Query: 125 ISIAASKMPIRTQFITS 142
           ISIAASK+PIRTQFITS
Sbjct: 121 ISIAASKLPIRTQFITS 137

[Close]
BLAST of Tan0015395 vs. NCBI nr
Match: YP_009560330.1 (50S ribosomal protein L16 [Zelkova schneideriana] >QAA79254.1 50S ribosomal protein L16 [Zelkova schneideriana] >QOE56519.1 50S ribosomal protein L16 [Zelkova serrata] >QWC54725.1 ribosomal protein L16 [Zelkova sinica])

HSP 1 Score: 273.9 bits (699), Expect = 8.0e-70
Identity = 131/138 (94.93%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 5   ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN 64
           ++INYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN
Sbjct: 2   LSINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRN 61

Query: 65  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA 124
           ARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKA
Sbjct: 62  ARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA 121

Query: 125 ISIAASKMPIRTQFITSG 143
           ISIAASKMPIRTQFI SG
Sbjct: 122 ISIAASKMPIRTQFIISG 139

[Close]
BLAST of Tan0015395 vs. NCBI nr
Match: YP_009176040.1 (ribosomal protein L16 [Ficus racemosa] >ALI30736.1 ribosomal protein L16 [Ficus racemosa])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 131/138 (94.93%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 5   ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN 64
           +TINYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN
Sbjct: 1   MTINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRN 60

Query: 65  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA 124
           ARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM GV ENIARKA
Sbjct: 61  ARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVPENIARKA 120

Query: 125 ISIAASKMPIRTQFITSG 143
           ISIAASKMPIRTQFI SG
Sbjct: 121 ISIAASKMPIRTQFIISG 138

[Close]
BLAST of Tan0015395 vs. NCBI nr
Match: QJA16182.1 (ribosomal protein L16 [Siraitia grosvenorii])

HSP 1 Score: 272.3 bits (695), Expect = 2.3e-69
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 10  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 69
           NPKRTRFRKHHRGRMKG+SYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG
Sbjct: 4   NPKRTRFRKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 63

Query: 70  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 129
           KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA
Sbjct: 64  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 123

Query: 130 SKMPIRTQFITSG 143
           SKMPIRTQFITSG
Sbjct: 124 SKMPIRTQFITSG 136

[Close]
BLAST of Tan0015395 vs. ExPASy TrEMBL
Match: A0A410HFB9 (50S ribosomal protein L16, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.2e-72
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 7   INYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 66
           +NYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR
Sbjct: 1   MNYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNAR 60

Query: 67  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAIS 126
           RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAIS
Sbjct: 61  RGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAIS 120

Query: 127 IAASKMPIRTQFITSG 143
           IAASKMPIRTQFITSG
Sbjct: 121 IAASKMPIRTQFITSG 136

[Close]
BLAST of Tan0015395 vs. ExPASy TrEMBL
Match: A0A6M4K441 (50S ribosomal protein L16, chloroplastic OS=Herpetospermum pedunculosum OX=386182 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.1e-71
Identity = 134/137 (97.81%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 5   ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN 64
           +TINYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN
Sbjct: 1   MTINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN 60

Query: 65  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA 124
           ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA
Sbjct: 61  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA 120

Query: 125 ISIAASKMPIRTQFITS 142
           ISIAASK+PIRTQFITS
Sbjct: 121 ISIAASKLPIRTQFITS 137

[Close]
BLAST of Tan0015395 vs. ExPASy TrEMBL
Match: A0A3R5W202 (50S ribosomal protein L16, chloroplastic OS=Zelkova schneideriana OX=172643 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.9e-70
Identity = 131/138 (94.93%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 5   ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN 64
           ++INYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN
Sbjct: 2   LSINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRN 61

Query: 65  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA 124
           ARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENIARKA
Sbjct: 62  ARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKA 121

Query: 125 ISIAASKMPIRTQFITSG 143
           ISIAASKMPIRTQFI SG
Sbjct: 122 ISIAASKMPIRTQFIISG 139

[Close]
BLAST of Tan0015395 vs. ExPASy TrEMBL
Match: A0A0N7H9Y2 (50S ribosomal protein L16, chloroplastic OS=Ficus racemosa OX=100569 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.6e-70
Identity = 131/138 (94.93%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 5   ITINYNPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRN 64
           +TINYNPKRTRFRKHHRGRMKG+SYRGNRICFGRYA+QALEPAWITSRQIEAGRRAMTRN
Sbjct: 1   MTINYNPKRTRFRKHHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRN 60

Query: 65  ARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKA 124
           ARRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM GV ENIARKA
Sbjct: 61  ARRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVPENIARKA 120

Query: 125 ISIAASKMPIRTQFITSG 143
           ISIAASKMPIRTQFI SG
Sbjct: 121 ISIAASKMPIRTQFIISG 138

[Close]
BLAST of Tan0015395 vs. ExPASy TrEMBL
Match: A0A6H1XKZ2 (50S ribosomal protein L16, chloroplastic OS=Siraitia grosvenorii OX=190515 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.1e-69
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 10  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 69
           NPKRTRFRKHHRGRMKG+SYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG
Sbjct: 4   NPKRTRFRKHHRGRMKGISYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 63

Query: 70  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 129
           KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA
Sbjct: 64  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 123

Query: 130 SKMPIRTQFITSG 143
           SKMPIRTQFITSG
Sbjct: 124 SKMPIRTQFITSG 136

[Close]
BLAST of Tan0015395 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 246.9 bits (629), Expect = 9.8e-66
Identity = 118/132 (89.39%), Postives = 125/132 (94.70%), Query Frame = 0 

Query: 10  NPKRTRFRKHHRGRMKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 69
           +PKRTRFRK HRGR+KG+S RGNRICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGG
Sbjct: 3   SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGG 62

Query: 70  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 129
           KIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPG+ILYEMGGV ENIARKAISIAA
Sbjct: 63  KIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAA 122

Query: 130 SKMPIRTQFITS 142
           SKMPI+TQFI S
Sbjct: 123 SKMPIKTQFIIS 134

[Close]
BLAST of Tan0015395 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 184.1 bits (466), Expect = 7.8e-47
Identity = 93/132 (70.45%), Postives = 112/132 (84.85%), Query Frame = 0 

Query: 11  PKRTRFRKHHRGRM-KGMSYRGNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGG 70
           P+RT+F+KHHRGR+ KG+S +G  IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG 
Sbjct: 832 PRRTKFQKHHRGRINKGVSSQG-YIC-SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGL 891

Query: 71  KIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAA 130
            + V IF DKPVT+RP ETRMG GKG+P +WVAVVKPG+I+YEMGGV+E +AR+AISIAA
Sbjct: 892 TVRVHIFADKPVTVRPPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKVAREAISIAA 951

Query: 131 SKMPIRTQFITS 142
           SK+P +T+FI S
Sbjct: 952 SKLPAKTKFIIS 961

[Close]
BLAST of Tan0015395 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-25
Identity = 60/138 (43.48%), Postives = 86/138 (62.32%), Query Frame = 0 

Query: 11  PKRTRFRKHHRGR-MKGMSYRGNRICFGRYAIQALEPAWITSRQIEAGR--------RAM 70
           PKRT++ K+ +GR  +G    G ++ FGRY  ++ +   ++ R IEA R        RAM
Sbjct: 39  PKRTKYSKYRKGRCSRGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAM 98

Query: 71  TRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIA 130
           +   RR GKIWVR+F D P+T +PTE RMG GKG+P  W+A V  G+I +EM GV+   A
Sbjct: 99  SGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLANA 158

Query: 131 RKAISIAASKMPIRTQFI 140
           R+A ++AA K    T+F+
Sbjct: 159 RQAATLAAHKPCSSTKFV 176

The following BLAST results are available for this feature:
BLAST of Tan0015395 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZN12.9e-7096.9950S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=... [more]
B1NWI75.4e-6994.7450S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 P... [more]
Q0ZIY15.4e-6994.7450S ribosomal protein L16, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl16 PE=... [more]
Q09ME01.2e-6894.7450S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=... [more]
Q49KW11.2e-6893.9850S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus ... [more]
BLAST of Tan0015395 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009560873.11.9e-7199.26ribosomal protein L16 [Trichosanthes kirilowii] >QAB33224.1 ribosomal protein L1... [more]
QJR52995.14.2e-7197.8150S ribosomal protein L16 [Herpetospermum pedunculosum][more]
YP_009560330.18.0e-7094.9350S ribosomal protein L16 [Zelkova schneideriana] >QAA79254.1 50S ribosomal prot... [more]
YP_009176040.11.4e-6994.93ribosomal protein L16 [Ficus racemosa] >ALI30736.1 ribosomal protein L16 [Ficus ... [more]
QJA16182.12.3e-6999.25ribosomal protein L16 [Siraitia grosvenorii][more]
BLAST of Tan0015395 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A410HFB99.2e-7299.2650S ribosomal protein L16, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=r... [more]
A0A6M4K4412.1e-7197.8150S ribosomal protein L16, chloroplastic OS=Herpetospermum pedunculosum OX=38618... [more]
A0A3R5W2023.9e-7094.9350S ribosomal protein L16, chloroplastic OS=Zelkova schneideriana OX=172643 GN=r... [more]
A0A0N7H9Y26.6e-7094.9350S ribosomal protein L16, chloroplastic OS=Ficus racemosa OX=100569 GN=rpl16 PE... [more]
A0A6H1XKZ21.1e-6999.2550S ribosomal protein L16, chloroplastic OS=Siraitia grosvenorii OX=190515 GN=rp... [more]
BLAST of Tan0015395 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00790.19.8e-6689.39ribosomal protein L16 [more]
AT2G28830.17.8e-4770.45PLANT U-BOX 12 [more]
ATMG00080.18.4e-2543.48ribosomal protein L16 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000114Ribosomal protein L16PRINTSPR00060RIBOSOMALL16coord: 65..94
score: 67.87
coord: 49..60
score: 71.5
coord: 31..43
score: 47.85
coord: 95..124
score: 58.73
IPR000114Ribosomal protein L16TIGRFAMTIGR01164TIGR01164coord: 9..134
e-value: 3.7E-60
score: 199.6
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 4..140
IPR000114Ribosomal protein L16HAMAPMF_01342Ribosomal_L16coord: 8..141
score: 38.782787
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 11..139
e-value: 1.2E-47
score: 161.2
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 30..139
e-value: 3.41161E-51
score: 156.498
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 7..142
e-value: 6.3E-64
score: 217.3
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 9..141
NoneNo IPR availablePANTHERPTHR12220:SF1339S RIBOSOMAL PROTEIN L16, MITOCHONDRIALcoord: 4..140
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00586RIBOSOMAL_L16_1coord: 66..77
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00701RIBOSOMAL_L16_2coord: 89..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0015395.1Tan0015395.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome