Tan0015393 (gene) Snake gourd v1

Overview
NameTan0015393
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
LocationLG03: 10466025 .. 10470825 (-)
RNA-Seq ExpressionTan0015393
SyntenyTan0015393
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACAGAGCAAGTTAGCTCTAGAAGAAACTGAAAAGTAAATAGCAAGTTATTGAGTTAGTTCAATAGAACTAGTAGAGCATGGTCCAAGCAAGGACAAGAGTAAGTCCAGTCAGGACTAGAATGTGAACACAAGTCTAGAATTGTGCCTTTGAGTTGAGTACTCATTACATGTCTAGTATGTTAATATGTTATAGAAGTCATGCCACCACGTACTAGCAGACGATGCAGGCAAGATCAGGACGGGACGCAGGATCCTACCCAAAGATCAATCCCAGTGGAGATCTAGTGCCCGAGAGTTCAGATACGGGCCAGAATTAAGCAACATGTTAATTCCTCACAGGAGGTAGGTAAGCCATAGGGAGCAGGGCTAAGTAATCCAGATAAGACATATAAAATAGATCAACTAAAAGAATTAGGAGCCACAGTGTTTGAGGGTTCCAAAGATCTAGTTGAAGCTGAGGTTTGGCTAAATAAGCTTGATAAATGTTTTGATGTTATGAGTTGCTCTGAGGAGCGAAATGTTAAGTTGGCCACATTCTTGCTACTAAAGAAGGCAGAAGGATGATGGAGATCGATGTTAGCCAGTTGTAGTGATGCACGTACTTCACACTGGCAAACTTTTAGAAGTATATTTGAAAATAAATATTACCTTAGCACGTACCGAGAGGCAAAGAGGGATGAATTTTTAGAACTAAAACAAGAGACACTTCCAGTGGCTGAGTATGAGAGAAGATATACCGAGATGTCGCGGTATGTTGATGTGATTGTGGCACCTAAGAACGATAGGTGTCGACGATTTGAAAAAGGGTTACGACCTGAGATATGTACCCCGATTCTGACCATTGCTAAGTGGGGTGACTTCTCTCACAGAGAGACCGCTCTACATGTTGAGCGAGTATATAGCAGAGGAGAAGTCAGTAGTGAAGCCTAGTTGTGGAGGCTTCGACAACAAGCAGTTTCCAAGGTCGTGAGCAACGGAGATTCACACTTGGAGTAAATGTTTCTAAGTCAATATGACTTTAAGGAGCAAGCTAGTAGCCAAGTAGCCAGGCATCGAGGCAGATGATTGTGGGTAGTGCCTATCAGAGGCAGAATTAAAAAGAACCTAATTAGTTTGTTTGATTAGCAGCAAGACTGCAAAGAGGGCAAGAGTCTATTGCCAGTATAGCAAGGAAAACTCCATGTATGATCTGTTGCAAGAATCATCAAGGTCATTGTCTTGTGAATGTTGGTACATGCTACCAGTGCTGACAACCAGGACATGTCAAGAGGGATTGTCCACAGCTATGGACAGCCGCACAGAGGGACTAGGGAGTAAAGTCCCAGTTAGTTGAGCAGCCTAGAGTATCAGTAGTTGCAAGAGAGGGCACCAGTGGTGTTAGACTAAAGAGAGTTGTAGGGAGGCCTAGGCAACACGGAAAGGTCTAGGTTATGACTCAAAGCAAGAAAGTCGAGGATGCACGAGATATGATTATTGGTACAATTACTATTTGAAATGTACCTGCACTTGTCTTGATAGAACAAGGTGCTACACATTTCTTTGTTTTTAGTATGTTCTTGGCTAAGTTGAATGGGAAGCTAGAACCTTTATGTAAAAGGTTAGTTATATACACTCCAGTTGGTGATGCTTTATTAGTCAATCCAGTGATGCAAAATTGTGAAGTCTTAGTAGAAGGTCTCAATATGTTAGTGGATCTTCTTCCACTAGACTTGCAGGTGTGAGATGCAATCTTAAAGATGGATTTCCTATTTACTCATTATGCTTCCAGAGATTGCCATATAAAGGAAGTTGTTTTCAAGAAACCAGGATTAGCTGAAGTGGTTTTATGGGATGAAAGAAAGACTATCCCTACGAGTTTGTTTGCACAACGTTTCTTGCACGTTGTCGATTCCTATGTAATAGGCTACGAGAGACCAATAATAAACTACTGATATGTCCTTGTGATTCAGGGTACGTAAAATATGTCCTTATTAATTTACTTCTATTTTGTATATATTCATAACTCTTATTTGATTGTAATTCTATATTTAGAAACCATGGGTCGTTGGTGGTTATCTCATCAAGAACTTCTACAGTTTGGTCGATCGAGTTCATTTGACATGAAATTCGCGATTATTTCAAAAATATAGTTAATACGTAAGTATATGAAACTTCTACCATTGATATATTTATGATTGAAAACATTATTCACTTATTTTATATATTTATACTTGTTTTGCGCTATTAGGATGGTTTATGCTCAAAGAAACGTTAGAAGTCCAATTCTTAATTGGATAGTTGTTTAGGTAATCATTTAGAATCTACCATTTTTTAGTATTATTTAGTTTATTTCTTCGAGTCTTGCTTAATATATGTTTTAATCTATTTATATAGTTTGTTAAGCAACCAAGAAGTACAAAGTGTGGGTACTAAACTATGAGATTTATTCGAGATATAGTAATACAAAGAAGTCGAGTGATTACAAGCGTGGTAATACTTTGAGTTTATTTTATGTGTTTTACAATTTCTTGATTTATTAAATTTTTAATGTAACTACACAAATTATTTGTTTGCAGTTGAAAAGAAAATATAAGTACACCCTAGATTAGTTTGATGAGATGAGAATGGAGTTATGTGAATTTGTATCTTGGTACTTATAAACATTTTTGTTATCATACTTCATTTATGTTATTTTCATGAGTTAGTGTTATGTTTTTTAACAGTTTACTTGAAACGATATGCAATTTTAACTTATTAGTTAGTTCATGGAACTTTGTTTAGTTCATTTACAATTATGTTAATTTTGATAAAATTTGTACTTTATATAGTTTGGCAATTGTTGAGTCCCTGTTACATTATTACTTAGTTTATGTGAAGTACATGTTGATAATGACTACCTTAATAAGAAAAATGTGAGTTGATAGAGTTAGTCATACTGATGCACGTGGTAGAGGATGAGTGGATAATATCCATTTTTTTATTTTGTATACATAATTATAATTGACGGCTAAAAAACAACATTAAAATCGGTAGAATTGACGGTTCAAAATTGTCAACATATATGTCATACTCAATAATGAAAAATGTAAACCCGAGATCTTTCTCTAGAACTTCCTTTTTATCAAACAACAAAAAGAAAGAAGAAATGAATGTTTAAAACTTGGTTTCCCATGTTTTAAAAAGAAAAGAAATGAAGTGAAAGACAAAAGGAAAACAAGGAAGAAAAACTTTAAACCATTTTTGGTTCGGTTTGCTTTAAAAGATAAAAGAAGAAGAGAAAATGAAACAAATGTAAATCATGTTAAGTTTGTTTTGTAAAGAAAAGAAAAGGAGGAAGGAGGTAAAAGAAAGGAAAGAAAAGGAAAAAAGGAATGAAAAAGGGAAAAGCAAAGTGGGTGGTAGACCCCACCATAGTTTTTTTTTTAAATAATCCTTTCCATCGATTTCTATCTCATTTTCAACAAGGAGCAGCAAGGGTTTCGTGGGAGAAGGTGAAAGGAAGAAGGAGAAGAAGCTTTTCATGAGTTAGAGTTGCAGAAGAAGGAAGGAGAGCTCAATGCTTGGTTGTTTAGCAGCAAGGAGATCAACTCAGACAAGCTCTGATTTTCTGTTCATCTCGAGCTCCACAAGAAGAGGTAAGAGTTGAGCTTTTGTTTCATGAAAGTTAACTCATATTGGAACAAACGTCGTGAAGGAAGCTCGAGCCAATTCTGATGTTAAGTTGCTGTTTTGTGAAGAGGAAGACAGAAGACAGAATTTGCTGTCAAATCCGAGAGGTCTCTGATGTTTTGGTTGTTTTAATCTGTATACTTGGAGTTAGAAGCTCTATTAGGTATGGTTGGAAAGCTTATTGAATTTCCTACAACTTTTGTGAAGAAACCGTGAACATAAAATGATTGGAAGATGTTGTAAATAGCAGGTCAAGTTTCGGGTTGCAGCAGAAAATCGATTATGGAATAGCAGAAGTTGGTTCCTGGGAAAGAAGACTTCGAGGTATTTCTGAACCAATCTATTGGGAATCTCATTTTCCTGTCTTCATAAGAGTTTTAGAGGGTTCAAAAAGGAAGAGTTTGGTATAAAGTACATTCTTTTGGGATAAGTAATGAAGAAGTTATGGCTGTCTGAAAACAGGACAGAAAATCTGAAAATGCTGAAATTTTTTAAAGTGTGTTTTCTTGTAGTTCTAAGGTTAAAAACCATGAGCTCGAGGTTCTAATACATGAATTTGGGTTGTTTGACAGGCCAAGAGCAAATAGGTCGAGTGTACGGGCTAAGATTCTAGTTCAAACACTGTGAGTGATCAAACGAACTTCAAGAGTGTTATTATGCTTGAATCATGTTTCAAGCAATGCAAGTTTTGCTAAAATGGAAGTCTTTCAATGCATTATGTTTTCTTTTGAACACATGTTTATGAGTATTCATGTTTTCCTAGAAATGTTTCAAGTGTTCATTGTGATCCTGAAAGTCTTTATGAAATTTATACATGAGCATATGTCCAATGATTGCCAAAATTTATGGAAATGTTATGATTTCAAGCAAGCATGTACTAGCAAGTATGTTTTAAAGATTTCAAGTTTTATGAACAAGCTGAGTAAGCTTGAGTTTTATGAAAGAAAAGATAAGCAGACATGTTCAAATGTTTTCATGTGATTTTCTGATATATTGAGCCCGAGGCTTTATGGTACCGTGTGCACACAGGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGTGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAG

mRNA sequence

ATGAGACAGAGCAAGTTAGCTCTAGAAGAAACTGAAAAAGATTGCCATATAAAGGAAGTTGTTTTCAAGAAACCAGGATTAGCTGAAGAGAGCTCAATGCTTGGTTGTTTAGCAGCAAGGAGATCAACTCAGACAAGCTCTGATTTTCTGTTCATCTCGAGCTCCACAAGAAGAGGTAAGAACAGAATTTGCTGTCAAATCCGAGAGGTCTCTGATGTTTTGGTTGTTTTAATCTGTATACTTGGAGTTAGAAGCTCTATTAGGCCAAGAGCAAATAGGTCGAGTGTACGGGCTAAGATTCTACCCGAGGCTTTATGGTACCGTGTGCACACAGGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGTGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAG

Coding sequence (CDS)

ATGAGACAGAGCAAGTTAGCTCTAGAAGAAACTGAAAAAGATTGCCATATAAAGGAAGTTGTTTTCAAGAAACCAGGATTAGCTGAAGAGAGCTCAATGCTTGGTTGTTTAGCAGCAAGGAGATCAACTCAGACAAGCTCTGATTTTCTGTTCATCTCGAGCTCCACAAGAAGAGGTAAGAACAGAATTTGCTGTCAAATCCGAGAGGTCTCTGATGTTTTGGTTGTTTTAATCTGTATACTTGGAGTTAGAAGCTCTATTAGGCCAAGAGCAAATAGGTCGAGTGTACGGGCTAAGATTCTACCCGAGGCTTTATGGTACCGTGTGCACACAGGTCTTATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAGTGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAG

Protein sequence

MRQSKLALEETEKDCHIKEVVFKKPGLAEESSMLGCLAARRSTQTSSDFLFISSSTRRGKNRICCQIREVSDVLVVLICILGVRSSIRPRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS
Homology
[Close]
BLAST of Tan0015393 vs. NCBI nr
Match: KAA0033241.1 (hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK20418.1 hypothetical protein E5676_scaffold590G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 8.3e-09
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 99  KILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 151
           +IL   L   V+TG + L TL+VLRDN A+VSAGR PLRQR+WECWA PTTS
Sbjct: 18  EILSLRLEDTVYTGYVSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]
BLAST of Tan0015393 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-07
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 89  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPT 148
           PR NR S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPT
Sbjct: 83  PRGNRLSLQTEEIDK-------TVIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPT 137

Query: 149 TS 151
           TS
Sbjct: 143 TS 137

[Close]
BLAST of Tan0015393 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-07
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 89  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPT 148
           PR NR S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPT
Sbjct: 83  PRGNRLSLQTEEIDK-------TVIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPT 137

Query: 149 TS 151
           TS
Sbjct: 143 TS 137

[Close]
BLAST of Tan0015393 vs. NCBI nr
Match: KAA0040296.1 (hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-06
Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 88  RPRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGP 147
           + R NR S++   L +       T +  LSTLSVLR+N A VSAGR PLRQRRWEC  GP
Sbjct: 182 KQRGNRPSLQTGELDK-------TVIFSLSTLSVLRNNDAAVSAGRVPLRQRRWECRTGP 237

Query: 148 TTS 151
           TTS
Sbjct: 242 TTS 237

[Close]
BLAST of Tan0015393 vs. NCBI nr
Match: TYK27262.1 (hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 99  KILPEALWYRVHTGLIL-LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 151
           +IL  +L+  V T +I  LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Sbjct: 244 EILSLSLYGTVCTQVIFSLSTLSVLRNNDAAVSAGRIPLRQRRWECRTGPTTS 296

[Close]
BLAST of Tan0015393 vs. ExPASy TrEMBL
Match: A0A5A7SUV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00130 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-09
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 99  KILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 151
           +IL   L   V+TG + L TL+VLRDN A+VSAGR PLRQR+WECWA PTTS
Sbjct: 18  EILSLRLEDTVYTGYVSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]
BLAST of Tan0015393 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.9e-08
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 89  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPT 148
           PR NR S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPT
Sbjct: 83  PRGNRLSLQTEEIDK-------TVIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPT 137

Query: 149 TS 151
           TS
Sbjct: 143 TS 137

[Close]
BLAST of Tan0015393 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.9e-08
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 89  PRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPT 148
           PR NR S++ + + +       T +  LSTLSVL DN AVVSAG+APLRQRRWEC  GPT
Sbjct: 83  PRGNRLSLQTEEIDK-------TVIFPLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPT 137

Query: 149 TS 151
           TS
Sbjct: 143 TS 137

[Close]
BLAST of Tan0015393 vs. ExPASy TrEMBL
Match: A0A5A7TDY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00310 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.4e-07
Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 88  RPRANRSSVRAKILPEALWYRVHTGLILLSTLSVLRDNSAVVSAGRAPLRQRRWECWAGP 147
           + R NR S++   L +       T +  LSTLSVLR+N A VSAGR PLRQRRWEC  GP
Sbjct: 182 KQRGNRPSLQTGELDK-------TVIFSLSTLSVLRNNDAAVSAGRVPLRQRRWECRTGP 237

Query: 148 TTS 151
           TTS
Sbjct: 242 TTS 237

[Close]
BLAST of Tan0015393 vs. ExPASy TrEMBL
Match: A0A5D3DUS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00290 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 99  KILPEALWYRVHTGLIL-LSTLSVLRDNSAVVSAGRAPLRQRRWECWAGPTTS 151
           +IL  +L+  V T +I  LSTLSVLR+N A VSAGR PLRQRRWEC  GPTTS
Sbjct: 244 EILSLSLYGTVCTQVIFSLSTLSVLRNNDAAVSAGRIPLRQRRWECRTGPTTS 296

The following BLAST results are available for this feature:
BLAST of Tan0015393 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0015393 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033241.18.3e-0965.38hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK2041... [more]
KAA0037581.12.0e-0758.06reverse transcriptase [Cucumis melo var. makuwa][more]
TYK03091.12.0e-0758.06reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0040296.11.7e-0655.56hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa][more]
TYK27262.12.3e-0666.04hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa][more]
BLAST of Tan0015393 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SUV24.0e-0965.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BTP39.9e-0858.06Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5A7T7M69.9e-0858.06Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7TDY38.4e-0755.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DUS71.1e-0666.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Tan0015393 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0015393.1Tan0015393.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016740 transferase activity