Tan0015277 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAATAACGGCATTACGACCATACTTGGCATTTCAATTCCAAAGTTATAGAGACTACATTGACGCTAAGACTATAGCAAATGCGATAAAAGAGAAGTGGATTGAAATACGAAATAAGGGAAATCCGAATGCGTTTGGGAGAGTTTTTCCTCTTACAATTACCCTGAAATTATGGAGCGTTGTGATGTTGCACGAGGAACAACGACGACGGTTGTTGGATATAAGGAGTGAAGATGGAATGGTTCCGACTTGTGGTAATGCTATTCAGAAGATGCTAAAGAGAGTGGAATTTGAGGATATGGAAGGTGATGATCAAATTTGTGTAATTTGCTTTGAGGAGATAAAAAATATAGGGGCAGAGAAAAAGAATTCAATTGTGAAAATGCCTTGCTTGCATGTGTTTCATGAGCATTGCATTAAGGAGTGGTTGAACAATAGCCATTACTGTCCCATTTGCAGATTTCAAATGCCTACAGATTAA ATGTCAATAACGGCATTACGACCATACTTGGCATTTCAATTCCAAAGTTATAGAGACTACATTGACGCTAAGACTATAGCAAATGCGATAAAAGAGAAGTGGATTGAAATACGAAATAAGGGAAATCCGAATGCGTTTGGGAGAGTTTTTCCTCTTACAATTACCCTGAAATTATGGAGCGTTGTGATGTTGCACGAGGAACAACGACGACGGTTGTTGGATATAAGGAGTGAAGATGGAATGGTTCCGACTTGTGGTAATGCTATTCAGAAGATGCTAAAGAGAGTGGAATTTGAGGATATGGAAGGTGATGATCAAATTTGTGTAATTTGCTTTGAGGAGATAAAAAATATAGGGGCAGAGAAAAAGAATTCAATTGTGAAAATGCCTTGCTTGCATGTGTTTCATGAGCATTGCATTAAGGAGTGGTTGAACAATAGCCATTACTGTCCCATTTGCAGATTTCAAATGCCTACAGATTAA ATGTCAATAACGGCATTACGACCATACTTGGCATTTCAATTCCAAAGTTATAGAGACTACATTGACGCTAAGACTATAGCAAATGCGATAAAAGAGAAGTGGATTGAAATACGAAATAAGGGAAATCCGAATGCGTTTGGGAGAGTTTTTCCTCTTACAATTACCCTGAAATTATGGAGCGTTGTGATGTTGCACGAGGAACAACGACGACGGTTGTTGGATATAAGGAGTGAAGATGGAATGGTTCCGACTTGTGGTAATGCTATTCAGAAGATGCTAAAGAGAGTGGAATTTGAGGATATGGAAGGTGATGATCAAATTTGTGTAATTTGCTTTGAGGAGATAAAAAATATAGGGGCAGAGAAAAAGAATTCAATTGTGAAAATGCCTTGCTTGCATGTGTTTCATGAGCATTGCATTAAGGAGTGGTTGAACAATAGCCATTACTGTCCCATTTGCAGATTTCAAATGCCTACAGATTAA MSITALRPYLAFQFQSYRDYIDAKTIANAIKEKWIEIRNKGNPNAFGRVFPLTITLKLWSVVMLHEEQRRRLLDIRSEDGMVPTCGNAIQKMLKRVEFEDMEGDDQICVICFEEIKNIGAEKKNSIVKMPCLHVFHEHCIKEWLNNSHYCPICRFQMPTD Homology
BLAST of Tan0015277 vs. ExPASy Swiss-Prot
Match: Q9CY62 (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.4e-09 Identity = 27/83 (32.53%), Postives = 46/83 (55.42%), Query Frame = 0
BLAST of Tan0015277 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.4e-09 Identity = 26/83 (31.33%), Postives = 47/83 (56.63%), Query Frame = 0
BLAST of Tan0015277 vs. ExPASy Swiss-Prot
Match: Q7ZW78 (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2) HSP 1 Score: 62.8 bits (151), Expect = 4.1e-09 Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 0
BLAST of Tan0015277 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 5.4e-09 Identity = 27/82 (32.93%), Postives = 45/82 (54.88%), Query Frame = 0
BLAST of Tan0015277 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 7.1e-09 Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 0
BLAST of Tan0015277 vs. NCBI nr
Match: KAG6571896.1 (E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 152.1 bits (383), Expect = 4.0e-33 Identity = 71/152 (46.71%), Postives = 103/152 (67.76%), Query Frame = 0
BLAST of Tan0015277 vs. NCBI nr
Match: XP_023511497.1 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 152.1 bits (383), Expect = 4.0e-33 Identity = 70/152 (46.05%), Postives = 103/152 (67.76%), Query Frame = 0
BLAST of Tan0015277 vs. NCBI nr
Match: XP_022952293.1 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita moschata] >KAG7011584.1 HRD1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 151.0 bits (380), Expect = 8.8e-33 Identity = 70/152 (46.05%), Postives = 103/152 (67.76%), Query Frame = 0
BLAST of Tan0015277 vs. NCBI nr
Match: XP_022972455.1 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita maxima]) HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32 Identity = 70/152 (46.05%), Postives = 102/152 (67.11%), Query Frame = 0
BLAST of Tan0015277 vs. NCBI nr
Match: XP_022961194.1 (probable E3 ubiquitin-protein ligase ZFP1 [Cucurbita moschata]) HSP 1 Score: 147.9 bits (372), Expect = 7.5e-32 Identity = 75/156 (48.08%), Postives = 102/156 (65.38%), Query Frame = 0
BLAST of Tan0015277 vs. ExPASy TrEMBL
Match: A0A6J1GK53 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucurbita moschata OX=3662 GN=LOC111455016 PE=4 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 4.3e-33 Identity = 70/152 (46.05%), Postives = 103/152 (67.76%), Query Frame = 0
BLAST of Tan0015277 vs. ExPASy TrEMBL
Match: A0A6J1I8N9 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucurbita maxima OX=3661 GN=LOC111471014 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 9.5e-33 Identity = 70/152 (46.05%), Postives = 102/152 (67.11%), Query Frame = 0
BLAST of Tan0015277 vs. ExPASy TrEMBL
Match: A0A6J1HDB7 (probable E3 ubiquitin-protein ligase ZFP1 OS=Cucurbita moschata OX=3662 GN=LOC111461780 PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 3.6e-32 Identity = 75/156 (48.08%), Postives = 102/156 (65.38%), Query Frame = 0
BLAST of Tan0015277 vs. ExPASy TrEMBL
Match: A0A6J1DWD8 (RING-H2 finger protein ATL47-like OS=Momordica charantia OX=3673 GN=LOC111025085 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 2.9e-29 Identity = 70/171 (40.94%), Postives = 103/171 (60.23%), Query Frame = 0
BLAST of Tan0015277 vs. ExPASy TrEMBL
Match: A0A6J1BQW1 (uncharacterized protein LOC111004784 OS=Momordica charantia OX=3673 GN=LOC111004784 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 8.3e-29 Identity = 73/170 (42.94%), Postives = 106/170 (62.35%), Query Frame = 0
BLAST of Tan0015277 vs. TAIR 10
Match: AT5G01980.1 (RING/U-box superfamily protein ) HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12 Identity = 45/165 (27.27%), Postives = 78/165 (47.27%), Query Frame = 0
BLAST of Tan0015277 vs. TAIR 10
Match: AT1G14200.1 (RING/U-box superfamily protein ) HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10 Identity = 28/83 (33.73%), Postives = 42/83 (50.60%), Query Frame = 0
BLAST of Tan0015277 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 62.4 bits (150), Expect = 3.8e-10 Identity = 27/82 (32.93%), Postives = 45/82 (54.88%), Query Frame = 0
BLAST of Tan0015277 vs. TAIR 10
Match: AT5G08139.1 (RING/U-box superfamily protein ) HSP 1 Score: 62.4 bits (150), Expect = 3.8e-10 Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 0
BLAST of Tan0015277 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein ) HSP 1 Score: 62.0 bits (149), Expect = 5.0e-10 Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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