Tan0015109 (gene) Snake gourd v1

Overview


Name	Tan0015109
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNase H domain-containing protein
Location	LG06: 69665134 .. 69665478 (+)
RNA-Seq Expression	Tan0015109
Synteny	Tan0015109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGGGTTTGGAAGTCTGCAAAGTCGATCGCTTGGAAACTCAACACCGATGCAGCGTGGTCTAGCAAGCTAAATCGTGGTGGACTGGAATGCATTGTTCGAGATTCTCTTGGGAATCCTCTCTTGGGTGGTTGTAAGTTTATCTCTTATAATTGGCCTGTTAAGCTTCTTGAAGCATATGTTATCCCGGAAGGTTTAAAGGAAATTCTTGCCTGGGGGAAAAGTCAAATCTCGCCTCTGATCGTGGAAACAGATTCCATGGAGGTTATTTCACTTTTGAATGGCACTGCCACAGACTTATCTGAATTTTTTTTTGTTATTGATGATCCTTATGATTGCTAA

mRNA sequence

ATGGTTCGGGTTTGGAAGTCTGCAAAGTCGATCGCTTGGAAACTCAACACCGATGCAGCGTGGTCTAGCAAGCTAAATCGTGGTGGACTGGAATGCATTGTTCGAGATTCTCTTGGGAATCCTCTCTTGGGTGGTTGTAAGTTTATCTCTTATAATTGGCCTGTTAAGCTTCTTGAAGCATATGTTATCCCGGAAGGTTTAAAGGAAATTCTTGCCTGGGGGAAAAGTCAAATCTCGCCTCTGATCGTGGAAACAGATTCCATGGAGGTTATTTCACTTTTGAATGGCACTGCCACAGACTTATCTGAATTTTTTTTTGTTATTGATGATCCTTATGATTGCTAA

Coding sequence (CDS)

ATGGTTCGGGTTTGGAAGTCTGCAAAGTCGATCGCTTGGAAACTCAACACCGATGCAGCGTGGTCTAGCAAGCTAAATCGTGGTGGACTGGAATGCATTGTTCGAGATTCTCTTGGGAATCCTCTCTTGGGTGGTTGTAAGTTTATCTCTTATAATTGGCCTGTTAAGCTTCTTGAAGCATATGTTATCCCGGAAGGTTTAAAGGAAATTCTTGCCTGGGGGAAAAGTCAAATCTCGCCTCTGATCGTGGAAACAGATTCCATGGAGGTTATTTCACTTTTGAATGGCACTGCCACAGACTTATCTGAATTTTTTTTTGTTATTGATGATCCTTATGATTGCTAA

Protein sequence

MVRVWKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIPEGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEFFFVIDDPYDC

Homology

[Close]

BLAST of Tan0015109 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-10
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 5   WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIP 64
           W+      W LN DA+WS   +RGG+  I+R   G+ +L G +F+     VKLLEA  I 
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 65  EGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEFFFVIDD 111
           EGL+ +   G   + PL +ETDS EV SLLN    DL++  +V+++
Sbjct: 131 EGLRNLTNLG--VLRPLHIETDSAEVESLLNRKREDLTKTGWVVEE 174

[Close]

BLAST of Tan0015109 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-09
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 5   WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIP 64
           WK   S +WKLNT+AAW +  N GG+  I+RD  G  +   C+ I     +  LE   I 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 65  EGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEFFFVIDD 111
           EGL+ I    +    P+ +E+DS+E I LL+    D +E  +++++
Sbjct: 139 EGLRAI---RQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEE 181

[Close]

BLAST of Tan0015109 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 6.3e-09
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 5   WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIP 64
           WK   S +WKLNTDAAW +  N GG+  I+RD  G  +   C+ I     +  LE   I 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 65  EGLKEI-----LAWGKSQISPLIVETDSMEVISLLNGTATDLSEFFFVIDD 111
           EGL+ I         +    P+ +E+DS+E I LL+    D +E  +++++
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEE 189

[Close]

BLAST of Tan0015109 vs. NCBI nr
Match: XP_038886170.1 (uncharacterized protein LOC120076417 [Benincasa hispida])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 0


Query: 5   WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIP 64
           W  +K   WKLN DA+W+SK++  GL  +  D L    + G KF+     V +LEA  I 
Sbjct: 69  WHPSKPFYWKLNMDASWNSKIDACGLGWVFLDHLYRVCMAGLKFVLRCQKVNILEAIAIC 128

Query: 65  EGLKEILAWGKSQISPLIVETDSM-EVISLLNGTATDLSEFFFVIDDPYD 114
            GL EIL+     IS ++VE+D + EVI+LLN    DLSE  F  ++  D
Sbjct: 129 FGL-EILS--SIDISNIMVESDCLEEVINLLNDDVVDLSEVSFCSEEAKD 175

[Close]

BLAST of Tan0015109 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-08
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 5   WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIP 64
           WK   S +WKLNTDAAW +  N  G+  I+RD  G  +  GC+ I     +  LE   I 
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 314

Query: 65  EGLKEILAWGKSQISPLIVETDSMEVISLLN 96
           EGL+ I    +    P+ +E+DS+E I LL+
Sbjct: 315 EGLRAI---RQEHCRPIHLESDSLEAIHLLH 342

[Close]

BLAST of Tan0015109 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 5   WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIP 64
           W+      W LN DA+WS   +RGG+  I+R   G+ +L G +F+     VKLLEA  I 
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 65  EGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEFFFVIDD 111
           EGL+ +   G   + PL +ETDS EV SLLN    DL++  +V+++
Sbjct: 131 EGLRNLTNLG--VLRPLHIETDSAEVESLLNRKREDLTKTGWVVEE 174

[Close]

BLAST of Tan0015109 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 5   WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIP 64
           WK   S +WKLNT+AAW +  N GG+  I+RD  G  +   C+ I     +  LE   I 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 65  EGLKEILAWGKSQISPLIVETDSMEVISLLNGTATDLSEFFFVIDD 111
           EGL+ I    +    P+ +E+DS+E I LL+    D +E  +++++
Sbjct: 139 EGLRAI---RQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEE 181

[Close]

BLAST of Tan0015109 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.1e-09
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 5   WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIP 64
           WK   S +WKLNTDAAW +  N GG+  I+RD  G  +   C+ I     +  LE   I 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 65  EGLKEI-----LAWGKSQISPLIVETDSMEVISLLNGTATDLSEFFFVIDD 111
           EGL+ I         +    P+ +E+DS+E I LL+    D +E  +++++
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEE 189

[Close]

BLAST of Tan0015109 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 5   WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIP 64
           WK   S +WKLNTDAAW +  N  G+  I+RD  G  +  GC+ I     +  LE   I 
Sbjct: 255 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 314

Query: 65  EGLKEILAWGKSQISPLIVETDSMEVISLLN 96
           EGL+ I    +    P+ +E+DS+E I LL+
Sbjct: 315 EGLRAI---RQEHCRPIHLESDSLEAIHLLH 342

[Close]

BLAST of Tan0015109 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 5   WKSAKSIAWKLNTDAAWSSKLNRGGLECIVRDSLGNPLLGGCKFISYNWPVKLLEAYVIP 64
           WK   S +WKLNTDAAW +  N  G+  I+RD  G  +  GC+ I     +  LE   I 
Sbjct: 220 WKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAIC 279

Query: 65  EGLKEILAWGKSQISPLIVETDSMEVISLLN 96
           EGL+ I    +    P+ +E+DS+E I LL+
Sbjct: 280 EGLRAI---RQEHCRPIHLESDSLEAIHLLH 307

The following BLAST results are available for this feature:

BLAST of Tan0015109 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0015109 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	2.6e-10	40.57	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143535.1	2.2e-09	34.91	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022156777.1	6.3e-09	34.23	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_038886170.1	1.1e-08	40.91	uncharacterized protein LOC120076417 [Benincasa hispida]	[more]
XP_022154990.1	4.1e-08	39.56	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]

BLAST of Tan0015109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.2e-10	40.57	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CP26	1.1e-09	34.91	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	3.1e-09	34.23	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DL64	2.0e-08	39.56	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQC9	2.0e-08	39.56	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Tan0015109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 16..101 e-value: 1.6E-9 score: 37.6
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 4..103
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 15..110 e-value: 2.31068E-9 score: 49.2348

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015109.1	Tan0015109.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity