Tan0015082 (gene) Snake gourd v1

Overview


Name	Tan0015082
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG10: 6041500 .. 6041793 (+)
RNA-Seq Expression	Tan0015082
Synteny	Tan0015082

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTTCCTTCTTTTTCTTCTGCAGCTTCAGCCTAACGTTGCTGGTAGGACTCTGCATGAGAAGCCAGCAATGGTGAGAAGAAGGGAGCTGCAGCTGAAGCTCAAGCTGCAGTCTCTTCAGAGGGTCAGCGTGCCGCCCTCCGGCCCCTCCGGTTGCACCTTCATTCCCGGCACCAATGGCCCCGGCTGTCCCCTCAAAGAGAGGCACTATGCTGCCAACCGTTCGACACGACATCCGATTGCTCACCGACGCCATGCCACCCCTGTTCGTGTGGTGGAGGCTCTCATCTGA

mRNA sequence

ATGACTTTCCTTCTTTTTCTTCTGCAGCTTCAGCCTAACGTTGCTGGTAGGACTCTGCATGAGAAGCCAGCAATGGTGAGAAGAAGGGAGCTGCAGCTGAAGCTCAAGCTGCAGTCTCTTCAGAGGGTCAGCGTGCCGCCCTCCGGCCCCTCCGGTTGCACCTTCATTCCCGGCACCAATGGCCCCGGCTGTCCCCTCAAAGAGAGGCACTATGCTGCCAACCGTTCGACACGACATCCGATTGCTCACCGACGCCATGCCACCCCTGTTCGTGTGGTGGAGGCTCTCATCTGA

Coding sequence (CDS)

ATGACTTTCCTTCTTTTTCTTCTGCAGCTTCAGCCTAACGTTGCTGGTAGGACTCTGCATGAGAAGCCAGCAATGGTGAGAAGAAGGGAGCTGCAGCTGAAGCTCAAGCTGCAGTCTCTTCAGAGGGTCAGCGTGCCGCCCTCCGGCCCCTCCGGTTGCACCTTCATTCCCGGCACCAATGGCCCCGGCTGTCCCCTCAAAGAGAGGCACTATGCTGCCAACCGTTCGACACGACATCCGATTGCTCACCGACGCCATGCCACCCCTGTTCGTGTGGTGGAGGCTCTCATCTGA

Protein sequence

MTFLLFLLQLQPNVAGRTLHEKPAMVRRRELQLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKERHYAANRSTRHPIAHRRHATPVRVVEALI

Homology

[Close]

BLAST of Tan0015082 vs. NCBI nr
Match: KAA0049291.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.2e-34
Identity = 76/94 (80.85%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 4  LLFLLQLQPNVAGRTLHEKPAMVRRRELQLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 63
          +L LLQLQPN+AGRTLHEKP MVRR  ++L LKLQSLQRVSVPPSGPSGCTFIPGTNGPG
Sbjct: 3  ILLLLQLQPNLAGRTLHEKPPMVRR--MELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 62

Query: 64 CPLKERHYAANRSTRHPIAHRRHATPVRVVEALI 98
          CPLKERHY A RSTR P  HRRHA P RVV+AL+
Sbjct: 63 CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 94

[Close]

BLAST of Tan0015082 vs. NCBI nr
Match: TYK17267.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.2e-34
Identity = 76/94 (80.85%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 4   LLFLLQLQPNVAGRTLHEKPAMVRRRELQLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 63
           +L LLQLQPN+AGRTLHEKP MVRR  ++L LKLQSLQRVSVPPSGPSGCTFIPGTNGPG
Sbjct: 12  ILLLLQLQPNLAGRTLHEKPPMVRR--MELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 71

Query: 64  CPLKERHYAANRSTRHPIAHRRHATPVRVVEALI 98
           CPLKERHY A RSTR P  HRRHA P RVV+AL+
Sbjct: 72  CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103

[Close]

BLAST of Tan0015082 vs. NCBI nr
Match: KGN56901.1 (hypothetical protein Csa_009866 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 2.4e-33
Identity = 75/97 (77.32%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1  MTFLLFLLQLQPNVAGRTLHEKPAMVRRRELQLKLKLQSLQRVSVPPSGPSGCTFIPGTN 60
          M  LL LLQLQPN+AGRTLHEKP MVRR  ++L LKLQSLQRVSVPPSGPSGCTFIPGTN
Sbjct: 1  MAILLLLLQLQPNLAGRTLHEKPPMVRR--MELNLKLQSLQRVSVPPSGPSGCTFIPGTN 60

Query: 61 GPGCPLKERHYAANRSTRHPIAHRRHATPVRVVEALI 98
          GPGCPLKERHY AN ST+ P  HRR+A P RVV+ L+
Sbjct: 61 GPGCPLKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95

[Close]

BLAST of Tan0015082 vs. NCBI nr
Match: KAG6597386.1 (hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028845.1 hypothetical protein SDJN02_10027, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 78/99 (78.79%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 1  MTFLLFLLQLQPNVAGRTLHEKPAMVRRREL--QLKLKLQSLQRVSVPPSGPSGCTFIPG 60
          M F+L LLQL PN AGRTL EKPAMVRRREL  +LKLKLQSLQRV VPPSGPSGCTFIPG
Sbjct: 1  MAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPG 60

Query: 61 TNGPGCPLKERHYAANRSTRHPIAHRRHATPVRVVEALI 98
          TNGPGCPL+ RHYA N S + P   RR+ATPVRVVEALI
Sbjct: 61 TNGPGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99

[Close]

BLAST of Tan0015082 vs. NCBI nr
Match: KAG7018772.1 (hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 7.5e-27
Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 10 LQPNVAGRTLHEKPAMVRRRELQLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 69
          L PN+AGRTLHE P+MVRR EL+LKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71

Query: 70 HYAANRSTRHPIAH 84
          HY  N STR P AH
Sbjct: 72 HYTINHSTRRPSAH 85

[Close]

BLAST of Tan0015082 vs. ExPASy TrEMBL
Match: A0A5D3CZY7 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001200 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-34
Identity = 76/94 (80.85%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 4   LLFLLQLQPNVAGRTLHEKPAMVRRRELQLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 63
           +L LLQLQPN+AGRTLHEKP MVRR  ++L LKLQSLQRVSVPPSGPSGCTFIPGTNGPG
Sbjct: 12  ILLLLQLQPNLAGRTLHEKPPMVRR--MELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 71

Query: 64  CPLKERHYAANRSTRHPIAHRRHATPVRVVEALI 98
           CPLKERHY A RSTR P  HRRHA P RVV+AL+
Sbjct: 72  CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103

[Close]

BLAST of Tan0015082 vs. ExPASy TrEMBL
Match: A0A5A7U6N3 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005320 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-34
Identity = 76/94 (80.85%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 4  LLFLLQLQPNVAGRTLHEKPAMVRRRELQLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 63
          +L LLQLQPN+AGRTLHEKP MVRR  ++L LKLQSLQRVSVPPSGPSGCTFIPGTNGPG
Sbjct: 3  ILLLLQLQPNLAGRTLHEKPPMVRR--MELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 62

Query: 64 CPLKERHYAANRSTRHPIAHRRHATPVRVVEALI 98
          CPLKERHY A RSTR P  HRRHA P RVV+AL+
Sbjct: 63 CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 94

[Close]

BLAST of Tan0015082 vs. ExPASy TrEMBL
Match: A0A0A0LA00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33
Identity = 75/97 (77.32%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1  MTFLLFLLQLQPNVAGRTLHEKPAMVRRRELQLKLKLQSLQRVSVPPSGPSGCTFIPGTN 60
          M  LL LLQLQPN+AGRTLHEKP MVRR  ++L LKLQSLQRVSVPPSGPSGCTFIPGTN
Sbjct: 1  MAILLLLLQLQPNLAGRTLHEKPPMVRR--MELNLKLQSLQRVSVPPSGPSGCTFIPGTN 60

Query: 61 GPGCPLKERHYAANRSTRHPIAHRRHATPVRVVEALI 98
          GPGCPLKERHY AN ST+ P  HRR+A P RVV+ L+
Sbjct: 61 GPGCPLKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95

[Close]

BLAST of Tan0015082 vs. ExPASy TrEMBL
Match: A0A5N6R1J5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008371 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 1  MTFLLFLLQLQPNVAGRTLHEKPAMVRRRELQLKLKLQSLQRVSVPPSGPSGCTFIPGTN 60
          M  LLFLL +Q   A R LH +            ++LQSLQR +VPPSG SGCT+IPGT 
Sbjct: 1  MLLLLFLLHVQLYEASRPLHAEE----------DVRLQSLQRGNVPPSGASGCTYIPGTG 60

Query: 61 GPGCPLKERHYAANRSTRHPIA 83
          GPGCP+KE HYA +   R  +A
Sbjct: 61 GPGCPVKEMHYAGDALPRPAMA 72

[Close]

BLAST of Tan0015082 vs. ExPASy TrEMBL
Match: A0A5N6QYI5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008369 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-10
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1  MTFLLFLLQLQPNVAGRTLHEKPAMVRRRELQLKLKLQSLQRVSVPPSGPSGCTFIPGTN 60
          M  LLFLL +Q   A R LH +            ++LQSLQR  VPPSG SGCT+IPGT 
Sbjct: 10 MLLLLFLLHVQLYEASRPLHAEE----------DVRLQSLQRGDVPPSGASGCTYIPGTG 69

Query: 61 GPGCPLKERHYAANRSTRHPIA 83
          GPGCP+KE +YA +   R  +A
Sbjct: 70 GPGCPVKEMNYAGDALPRPAMA 81

The following BLAST results are available for this feature:

BLAST of Tan0015082 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0015082 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049291.1	2.2e-34	80.85	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
TYK17267.1	2.2e-34	80.85	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
KGN56901.1	2.4e-33	77.32	hypothetical protein Csa_009866 [Cucumis sativus]	[more]
KAG6597386.1	2.0e-32	78.79	hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018772.1	7.5e-27	82.43	hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Tan0015082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZY7	1.0e-34	80.85	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7U6N3	1.0e-34	80.85	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0LA00	1.2e-33	77.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1	[more]
A0A5N6R1J5	3.6e-11	51.22	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008371 PE=4 SV=1	[more]
A0A5N6QYI5	3.1e-10	50.00	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008369 PE=4 SV=1	[more]

BLAST of Tan0015082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592:SF5	TRANSMEMBRANE PROTEIN	coord: 3..92
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 3..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015082.1	Tan0015082.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane