Tan0015028 (gene) Snake gourd v1

Overview


Name	Tan0015028
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L22, chloroplastic
Location	LG11: 22311727 .. 22312248 (-)
RNA-Seq Expression	Tan0015028
Synteny	Tan0015028

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAAGAAGATAAAAAAGATAAAGAAGATAAAAAAGAATCGATATACGGAAGTATACGCTTTAGGTCAACATATATGTATGTCCCCTCACAAAGCGCGAAGAGTAATTGACCAGATTCGTGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCGAGCATGTTATCCAATTTTTAAATTGGTTTATTCGGCAGCAGCAAATGCTAGTCACAATATGGGTTTCAACGAAAGAAATTTAATCATTAGTAAAGCGGAAGTCAACCAAAGTACTACTGTGAAAAAATTAAAACCTAGAGCTCGAGGGCGAAGTTATCCCATAAAACGACCGACTTGTTCTATAACTATTGTATTGAAAAATACATCTTTCAATGAAGAAGAGTTTCAAAGATACCAATACAACATATTAGACTTAAACAAACCTGGTGGATGGATAACTAAAGAAAAGTACACAGATATGACGTGTTATGACATGTATAATAATGGGGGATTATGGGACAAAAAATAA

mRNA sequence

ATGATAAAGAAGATAAAAAAGATAAAGAAGATAAAAAAGAATCGATATACGGAAGTATACGCTTTAGGTCAACATATATGTATGTCCCCTCACAAAGCGCGAAGAGTAATTGACCAGATTCGTGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCGAGCATGTTATCCAATTTTTAAATTGGTTTATTCGGCAGCAGCAAATGCTAGTCACAATATGGGTTTCAACGAAAGAAATTTAATCATTAGTAAAGCGGAAGTCAACCAAAGTACTACTGTGAAAAAATTAAAACCTAGAGCTCGAGGGCGAAGTTATCCCATAAAACGACCGACTTGTTCTATAACTATTGTATTGAAAAATACATCTTTCAATGAAGAAGAGTTTCAAAGATACCAATACAACATATTAGACTTAAACAAACCTGGTGGATGGATAACTAAAGAAAAGTACACAGATATGACGTGTTATGACATGTATAATAATGGGGGATTATGGGACAAAAAATAA

Coding sequence (CDS)

ATGATAAAGAAGATAAAAAAGATAAAGAAGATAAAAAAGAATCGATATACGGAAGTATACGCTTTAGGTCAACATATATGTATGTCCCCTCACAAAGCGCGAAGAGTAATTGACCAGATTCGTGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCGAGCATGTTATCCAATTTTTAAATTGGTTTATTCGGCAGCAGCAAATGCTAGTCACAATATGGGTTTCAACGAAAGAAATTTAATCATTAGTAAAGCGGAAGTCAACCAAAGTACTACTGTGAAAAAATTAAAACCTAGAGCTCGAGGGCGAAGTTATCCCATAAAACGACCGACTTGTTCTATAACTATTGTATTGAAAAATACATCTTTCAATGAAGAAGAGTTTCAAAGATACCAATACAACATATTAGACTTAAACAAACCTGGTGGATGGATAACTAAAGAAAAGTACACAGATATGACGTGTTATGACATGTATAATAATGGGGGATTATGGGACAAAAAATAA

Protein sequence

MIKKIKKIKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLVYSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTSFNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK

Homology

[Close]

BLAST of Tan0015028 vs. ExPASy Swiss-Prot
Match: Q4VZM9 (50S ribosomal protein L22, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 2.8e-80
Identity = 148/164 (90.24%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 10  KIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLVYS 69
           K KKNRY EVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPI KLVYS
Sbjct: 3   KTKKNRY-EVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYS 62

Query: 70  AAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTSFN 129
           AAANASHNMGFNER+L+ISKAEVNQ TTVKKLKPRA+GRSYPIKRPTCSITIVLKNTS N
Sbjct: 63  AAANASHNMGFNERDLVISKAEVNQGTTVKKLKPRAQGRSYPIKRPTCSITIVLKNTSVN 122

Query: 130 EEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           EEEF+RYQY I   N+PGG ITKEKYTDM CYDMYNNGGLWDKK
Sbjct: 123 EEEFKRYQYTI---NQPGGLITKEKYTDMRCYDMYNNGGLWDKK 162

[Close]

BLAST of Tan0015028 vs. ExPASy Swiss-Prot
Match: A6MM76 (50S ribosomal protein L22, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-62
Identity = 123/163 (75.46%), Postives = 134/163 (82.21%), Query Frame = 0


Query: 11  IKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLVYSA 70
           IKKNR  EVYALGQHICMS HKARRVIDQIRGRSYEE +MILELMPYRACYPIFKLVYSA
Sbjct: 2   IKKNRDAEVYALGQHICMSAHKARRVIDQIRGRSYEEALMILELMPYRACYPIFKLVYSA 61

Query: 71  AANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTSFNE 130
           AANASHNMGFNE + +ISKAEVN  T+VKKLKPRARGRSY IKRPTC ITIVLK+   +E
Sbjct: 62  AANASHNMGFNEADSVISKAEVNDGTSVKKLKPRARGRSYLIKRPTCHITIVLKDIYLDE 121

Query: 131 EEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           +        I+ L K  GWI + KYTDMTC DMY +GG+WDKK
Sbjct: 122 K-------YIIWLRK-YGWIYRNKYTDMTCRDMYGSGGVWDKK 156

[Close]

BLAST of Tan0015028 vs. ExPASy Swiss-Prot
Match: Q49KV9 (50S ribosomal protein L22, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.0e-61
Identity = 124/165 (75.15%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 9   KKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLVY 68
           KK  KN Y EVYALGQHI MS HKARRVIDQIRGRSYEET+MILELMPYRACYPIFKLVY
Sbjct: 3   KKRNKNLYGEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVY 62

Query: 69  SAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTSF 128
           SAAANASHNMGFNE +L+ISKAEVN+ TT+KKLKPRARGRSY IKRPTC I IVLK+ SF
Sbjct: 63  SAAANASHNMGFNEASLVISKAEVNEGTTMKKLKPRARGRSYAIKRPTCHIRIVLKDKSF 122

Query: 129 NEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
            EEE      N   L K   W  K+KYTDMT + M   GGLWDKK
Sbjct: 123 YEEE------NFFCL-KQSEWKKKKKYTDMTYHYMDKGGGLWDKK 160

[Close]

BLAST of Tan0015028 vs. ExPASy Swiss-Prot
Match: P56795 (50S ribosomal protein L22, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-60
Identity = 119/166 (71.69%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 8   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 67
           IKK KK  YTEVYALGQ+I MS HKARRVIDQIRGRSYEE +MILELMPYR CYPIFKLV
Sbjct: 2   IKKRKKKSYTEVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLV 61

Query: 68  YSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 127
           YSAAANASHN GF E NL+ISKAEVNQ  TVKKLKPRARGRSYPIKR TC ITIVL++ S
Sbjct: 62  YSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDIS 121

Query: 128 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           F    +Q+Y+  ++ L KPG      +  ++TCYD Y++GGLWDKK
Sbjct: 122 F----YQQYEEYLMYLKKPG---CSNENRNLTCYDTYSSGGLWDKK 160

[Close]

BLAST of Tan0015028 vs. ExPASy Swiss-Prot
Match: A4QJX0 (50S ribosomal protein L22, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.5e-60
Identity = 118/166 (71.08%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 8   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 67
           IKK KK  YT VYALGQ+I MS HKARRVIDQIRGRSYEE +MILELMPYR CYPIFKLV
Sbjct: 2   IKKRKKKSYTSVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLV 61

Query: 68  YSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 127
           YSAAANASHN GF E NL+ISKAEVNQ  TVKKLKPRARGRSYPIKR TC ITIVL++ S
Sbjct: 62  YSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDIS 121

Query: 128 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           F    +Q+Y+  ++ L KPG    + +  ++TCYD Y++GGLWDKK
Sbjct: 122 F----YQQYEEYLMYLKKPG---CRNENRNLTCYDTYSSGGLWDKK 160

[Close]

BLAST of Tan0015028 vs. NCBI nr
Match: YP_009753913.1 (ribosomal protein L22 [Trichosanthes lobata] >QIT05861.1 ribosomal protein L22 [Trichosanthes lobata])

HSP 1 Score: 355.9 bits (912), Expect = 1.9e-94
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MIKKIKKIKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRAC 60
           MIKKIKKIKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRAC
Sbjct: 1   MIKKIKKIKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRAC 60

Query: 61  YPIFKLVYSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSIT 120
           YPIFKLVYSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSIT
Sbjct: 61  YPIFKLVYSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSIT 120

Query: 121 IVLKNTSFNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           IVLKNTSFNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK
Sbjct: 121 IVLKNTSFNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 173

[Close]

BLAST of Tan0015028 vs. NCBI nr
Match: YP_009753213.1 (ribosomal protein L22 [Trichosanthes truncata] >QIT06285.1 ribosomal protein L22 [Trichosanthes truncata])

HSP 1 Score: 344.7 bits (883), Expect = 4.5e-91
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 8   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 67
           IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV
Sbjct: 2   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 61

Query: 68  YSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 127
           YSAAANASHNMGFNERNL+ISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS
Sbjct: 62  YSAAANASHNMGFNERNLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 121

Query: 128 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK
Sbjct: 122 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 167

[Close]

BLAST of Tan0015028 vs. NCBI nr
Match: YP_009752535.1 (ribosomal protein L22 [Trichosanthes tubiflora] >QIT04931.1 ribosomal protein L22 [Trichosanthes tubiflora])

HSP 1 Score: 342.4 bits (877), Expect = 2.2e-90
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 8   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 67
           IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPI KLV
Sbjct: 2   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLV 61

Query: 68  YSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 127
           YSAAANASHNMGFNERNL+ISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS
Sbjct: 62  YSAAANASHNMGFNERNLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 121

Query: 128 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK
Sbjct: 122 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 167

[Close]

BLAST of Tan0015028 vs. NCBI nr
Match: YP_009560875.1 (ribosomal protein L22 [Trichosanthes kirilowii] >YP_009752451.1 ribosomal protein L22 [Trichosanthes tricuspidata] >YP_009753659.1 ribosomal protein L22 [Trichosanthes wallichiana] >YP_009753744.1 ribosomal protein L22 [Trichosanthes nervifolia] >QAB33226.1 ribosomal protein L22 [Trichosanthes kirilowii] >QIT04678.1 ribosomal protein L22 [Trichosanthes wallichiana] >QIT04847.1 ribosomal protein L22 [Trichosanthes tricuspidata] >QIT05355.1 ribosomal protein L22 [Trichosanthes nervifolia])

HSP 1 Score: 341.3 bits (874), Expect = 5.0e-90
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 8   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 67
           IKKIK+NRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPI KLV
Sbjct: 2   IKKIKRNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLV 61

Query: 68  YSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 127
           YSAAANASHNMGFNERNL+ISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS
Sbjct: 62  YSAAANASHNMGFNERNLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 121

Query: 128 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK
Sbjct: 122 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 167

[Close]

BLAST of Tan0015028 vs. NCBI nr
Match: QJD26509.1 (ribosomal protein L22 [Trichosanthes kirilowii var. japonica] >QJD26596.1 ribosomal protein L22 [Trichosanthes kirilowii var. japonica])

HSP 1 Score: 339.7 bits (870), Expect = 1.4e-89
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 8   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 67
           IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPI KLV
Sbjct: 2   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLV 61

Query: 68  YSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 127
           YSAAANASHNMGFNE NL+ISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS
Sbjct: 62  YSAAANASHNMGFNEGNLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 121

Query: 128 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK
Sbjct: 122 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 167

[Close]

BLAST of Tan0015028 vs. ExPASy TrEMBL
Match: A0A6H0EU72 (50S ribosomal protein L22, chloroplastic OS=Trichosanthes lobata OX=2613913 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 9.4e-95
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MIKKIKKIKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRAC 60
           MIKKIKKIKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRAC
Sbjct: 1   MIKKIKKIKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRAC 60

Query: 61  YPIFKLVYSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSIT 120
           YPIFKLVYSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSIT
Sbjct: 61  YPIFKLVYSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSIT 120

Query: 121 IVLKNTSFNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           IVLKNTSFNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK
Sbjct: 121 IVLKNTSFNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 173

[Close]

BLAST of Tan0015028 vs. ExPASy TrEMBL
Match: A0A6H0EWT3 (50S ribosomal protein L22, chloroplastic OS=Trichosanthes truncata OX=685060 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.2e-91
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 8   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 67
           IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV
Sbjct: 2   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 61

Query: 68  YSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 127
           YSAAANASHNMGFNERNL+ISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS
Sbjct: 62  YSAAANASHNMGFNERNLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 121

Query: 128 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK
Sbjct: 122 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 167

[Close]

BLAST of Tan0015028 vs. ExPASy TrEMBL
Match: A0A6H0ERL6 (50S ribosomal protein L22, chloroplastic OS=Trichosanthes tubiflora OX=1144424 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 8   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 67
           IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPI KLV
Sbjct: 2   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLV 61

Query: 68  YSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 127
           YSAAANASHNMGFNERNL+ISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS
Sbjct: 62  YSAAANASHNMGFNERNLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 121

Query: 128 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK
Sbjct: 122 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 167

[Close]

BLAST of Tan0015028 vs. ExPASy TrEMBL
Match: A0A6H0ESV3 (50S ribosomal protein L22, chloroplastic OS=Trichosanthes tricuspidata OX=654837 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-90
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 8   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 67
           IKKIK+NRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPI KLV
Sbjct: 2   IKKIKRNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLV 61

Query: 68  YSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 127
           YSAAANASHNMGFNERNL+ISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS
Sbjct: 62  YSAAANASHNMGFNERNLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 121

Query: 128 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK
Sbjct: 122 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 167

[Close]

BLAST of Tan0015028 vs. ExPASy TrEMBL
Match: A0A410HFC4 (50S ribosomal protein L22, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-90
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 8   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 67
           IKKIK+NRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPI KLV
Sbjct: 2   IKKIKRNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLV 61

Query: 68  YSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 127
           YSAAANASHNMGFNERNL+ISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS
Sbjct: 62  YSAAANASHNMGFNERNLVISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 121

Query: 128 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK
Sbjct: 122 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 167

[Close]

BLAST of Tan0015028 vs. TAIR 10
Match: ATCG00810.1 (ribosomal protein L22 )

HSP 1 Score: 234.2 bits (596), Expect = 8.0e-62
Identity = 119/166 (71.69%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 8   IKKIKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLV 67
           IKK KK  YTEVYALGQ+I MS HKARRVIDQIRGRSYEE +MILELMPYR CYPIFKLV
Sbjct: 2   IKKRKKKSYTEVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLV 61

Query: 68  YSAAANASHNMGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTS 127
           YSAAANASHN GF E NL+ISKAEVNQ  TVKKLKPRARGRSYPIKR TC ITIVL++ S
Sbjct: 62  YSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDIS 121

Query: 128 FNEEEFQRYQYNILDLNKPGGWITKEKYTDMTCYDMYNNGGLWDKK 174
           F    +Q+Y+  ++ L KPG      +  ++TCYD Y++GGLWDKK
Sbjct: 122 F----YQQYEEYLMYLKKPG---CSNENRNLTCYDTYSSGGLWDKK 160

[Close]

BLAST of Tan0015028 vs. TAIR 10
Match: AT1G52370.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 43/130 (33.08%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 18  EVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLVYSAAANASHN 77
           +V A+ + I  SP K   V   +RG   E+ +M L++   RA   +++++++A ANA+HN
Sbjct: 105 KVQAVLKSIKQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHN 164

Query: 78  MGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTSFNEE-EFQRY 137
            G +   L++++A V +    KK+   A+GRS  I  P C +T++++ T+  EE E  R 
Sbjct: 165 HGLDPDRLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARL 224

Query: 138 Q-YNILDLNK 146
           + +N   LNK
Sbjct: 225 KVHNFKKLNK 234

[Close]

BLAST of Tan0015028 vs. TAIR 10
Match: AT1G52370.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 43/130 (33.08%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 18  EVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLVYSAAANASHN 77
           +V A+ + I  SP K   V   +RG   E+ +M L++   RA   +++++++A ANA+HN
Sbjct: 105 KVQAVLKSIKQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHN 164

Query: 78  MGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTSFNEE-EFQRY 137
            G +   L++++A V +    KK+   A+GRS  I  P C +T++++ T+  EE E  R 
Sbjct: 165 HGLDPDRLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARL 224

Query: 138 Q-YNILDLNK 146
           + +N   LNK
Sbjct: 225 KVHNFKKLNK 234

[Close]

BLAST of Tan0015028 vs. TAIR 10
Match: AT1G52370.3 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 43/130 (33.08%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 18  EVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLVYSAAANASHN 77
           +V A+ + I  SP K   V   +RG   E+ +M L++   RA   +++++++A ANA+HN
Sbjct: 105 KVQAVLKSIKQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHN 164

Query: 78  MGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTSFNEE-EFQRY 137
            G +   L++++A V +    KK+   A+GRS  I  P C +T++++ T+  EE E  R 
Sbjct: 165 HGLDPDRLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARL 224

Query: 138 Q-YNILDLNK 146
           + +N   LNK
Sbjct: 225 KVHNFKKLNK 234

[Close]

BLAST of Tan0015028 vs. TAIR 10
Match: AT4G28360.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-12
Identity = 36/114 (31.58%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 18  EVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPIFKLVYSAAANASHN 77
           +V A+ + I  SP K   V   +RG   E+ ++ L++   RA   +++++++A ANA+HN
Sbjct: 106 KVQAVLKSIKQSPKKVNLVAALVRGMRVEDALIQLQVTVKRAAQTVYRVIHAARANATHN 165

Query: 78  MGFNERNLIISKAEVNQSTTVKKLKPRARGRSYPIKRPTCSITIVLKNTSFNEE 132
            G +   L++++A V +    KK+   A+GRS  I  P C +T++++ T+  EE
Sbjct: 166 HGLDPDRLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTPEEE 219

The following BLAST results are available for this feature:

BLAST of Tan0015028 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZM9	2.8e-80	90.24	50S ribosomal protein L22, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl22 PE=...	[more]
A6MM76	1.6e-62	75.46	50S ribosomal protein L22, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl22...	[more]
Q49KV9	3.0e-61	75.15	50S ribosomal protein L22, chloroplastic OS=Eucalyptus globulus subsp. globulus ...	[more]
P56795	1.1e-60	71.69	50S ribosomal protein L22, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rpl2...	[more]
A4QJX0	2.5e-60	71.08	50S ribosomal protein L22, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=r...	[more]

BLAST of Tan0015028 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009753913.1	1.9e-94	100.00	ribosomal protein L22 [Trichosanthes lobata] >QIT05861.1 ribosomal protein L22 [...	[more]
YP_009753213.1	4.5e-91	99.40	ribosomal protein L22 [Trichosanthes truncata] >QIT06285.1 ribosomal protein L22...	[more]
YP_009752535.1	2.2e-90	98.80	ribosomal protein L22 [Trichosanthes tubiflora] >QIT04931.1 ribosomal protein L2...	[more]
YP_009560875.1	5.0e-90	98.19	ribosomal protein L22 [Trichosanthes kirilowii] >YP_009752451.1 ribosomal protei...	[more]
QJD26509.1	1.4e-89	98.19	ribosomal protein L22 [Trichosanthes kirilowii var. japonica] >QJD26596.1 riboso...	[more]

BLAST of Tan0015028 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EU72	9.4e-95	100.00	50S ribosomal protein L22, chloroplastic OS=Trichosanthes lobata OX=2613913 GN=r...	[more]
A0A6H0EWT3	2.2e-91	99.40	50S ribosomal protein L22, chloroplastic OS=Trichosanthes truncata OX=685060 GN=...	[more]
A0A6H0ERL6	1.1e-90	98.80	50S ribosomal protein L22, chloroplastic OS=Trichosanthes tubiflora OX=1144424 G...	[more]
A0A6H0ESV3	2.4e-90	98.19	50S ribosomal protein L22, chloroplastic OS=Trichosanthes tricuspidata OX=654837...	[more]
A0A410HFC4	2.4e-90	98.19	50S ribosomal protein L22, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=r...	[more]

BLAST of Tan0015028 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00810.1	8.0e-62	71.69	ribosomal protein L22	[more]
AT1G52370.1	1.4e-13	33.08	Ribosomal protein L22p/L17e family protein	[more]
AT1G52370.2	1.4e-13	33.08	Ribosomal protein L22p/L17e family protein	[more]
AT1G52370.3	1.4e-13	33.08	Ribosomal protein L22p/L17e family protein	[more]
AT4G28360.1	2.6e-12	31.58	Ribosomal protein L22p/L17e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 13..144 e-value: 5.1E-44 score: 151.4
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 12..125
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 23..124 e-value: 9.7E-27 score: 93.2
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 19..123 e-value: 3.49111E-40 score: 129.533
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	TIGRFAM	TIGR01044	TIGR01044	coord: 24..122 e-value: 1.7E-27 score: 93.6
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	PANTHER	PTHR13501	CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED	coord: 4..136
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	HAMAP	MF_01331_B	Ribosomal_L22_B	coord: 17..126 score: 25.146484
None	No IPR available	PANTHER	PTHR13501:SF10	39S RIBOSOMAL PROTEIN L22, MITOCHONDRIAL-RELATED	coord: 4..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015028.1	Tan0015028.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome