Tan0014779 (gene) Snake gourd v1

Overview
NameTan0014779
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG06: 79927353 .. 79927679 (-)
RNA-Seq ExpressionTan0014779
SyntenyTan0014779
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTATGATGAAGAGGGCACTTCTTCTCCTTGCTGCCTTGTTGCTGCTCCTGATGATGGCCGATGCTGCGATGCAGGGTGTGGTCGAGAACAAAGGTGCACGTAAGCTGGCTCAGGACTTTAGTGGTCGAACCCCTAAAGTGTTGGATGATGCAATTGAGTCTGAACATGAAGATATTGATGCTGCTCAAGCTGATGTTGGCTCTAACAACAATGAAAACAACAACGAGGACGATGACGAAAATCTTGGTTATAAAAATTACGGAAAGGGCTCGGATACCGAAACTCACCGTTACTTCTCAAGTGATAAGCCATACCGACCCTAA

mRNA sequence

ATGATTATGATGAAGAGGGCACTTCTTCTCCTTGCTGCCTTGTTGCTGCTCCTGATGATGGCCGATGCTGCGATGCAGGGTGTGGTCGAGAACAAAGGTGCACGTAAGCTGGCTCAGGACTTTAGTGGTCGAACCCCTAAAGTGTTGGATGATGCAATTGAGTCTGAACATGAAGATATTGATGCTGCTCAAGCTGATGTTGGCTCTAACAACAATGAAAACAACAACGAGGACGATGACGAAAATCTTGGTTATAAAAATTACGGAAAGGGCTCGGATACCGAAACTCACCGTTACTTCTCAAGTGATAAGCCATACCGACCCTAA

Coding sequence (CDS)

ATGATTATGATGAAGAGGGCACTTCTTCTCCTTGCTGCCTTGTTGCTGCTCCTGATGATGGCCGATGCTGCGATGCAGGGTGTGGTCGAGAACAAAGGTGCACGTAAGCTGGCTCAGGACTTTAGTGGTCGAACCCCTAAAGTGTTGGATGATGCAATTGAGTCTGAACATGAAGATATTGATGCTGCTCAAGCTGATGTTGGCTCTAACAACAATGAAAACAACAACGAGGACGATGACGAAAATCTTGGTTATAAAAATTACGGAAAGGGCTCGGATACCGAAACTCACCGTTACTTCTCAAGTGATAAGCCATACCGACCCTAA

Protein sequence

MIMMKRALLLLAALLLLLMMADAAMQGVVENKGARKLAQDFSGRTPKVLDDAIESEHEDIDAAQADVGSNNNENNNEDDDENLGYKNYGKGSDTETHRYFSSDKPYRP
Homology
BLAST of Tan0014779 vs. NCBI nr
Match: XP_004150985.1 (uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical protein Csa_021763 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 5.6e-23
Identity = 82/112 (73.21%), Postives = 88/112 (78.57%), Query Frame = 0

Query: 1   MIMMKRALLLLAALLLLLMMADAAMQGVVENKGARKLAQDFS-GRTPK--VLDDAIESEH 60
           MIMMKR LLL AALLLLL MADA    +VE KGARKLAQ FS  RTPK  V +DA ES+ 
Sbjct: 1   MIMMKRVLLLFAALLLLL-MADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDL 60

Query: 61  EDIDAAQADVGSNNNEN-NNEDDDENLGYKNYGKGSDTETHRYFSSDKPYRP 109
           E+ D A  DV +NNN N +NEDDD NLGYKNYGKGSDTETHRYFSSDKPYRP
Sbjct: 61  ENTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

BLAST of Tan0014779 vs. NCBI nr
Match: TYK02960.1 (uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-21
Identity = 77/110 (70.00%), Postives = 82/110 (74.55%), Query Frame = 0

Query: 3   MMKRALLLLAALLLLLMMADAAMQGVVENKGARKLAQDFSG-RTPK--VLDDAIESEHED 62
           MMKR LLL A LLLLL MADAAM  VVE KGARKLAQ     R PK  V +DA E E + 
Sbjct: 1   MMKRVLLLFAVLLLLL-MADAAMSNVVEKKGARKLAQGSGDRRIPKAEVFNDANEPELKK 60

Query: 63  IDAAQADVGSNNNEN-NNEDDDENLGYKNYGKGSDTETHRYFSSDKPYRP 109
            D A  DV +NN +N +NEDDD NLGYKNYGKGSDTETHRYFSSDKPYRP
Sbjct: 61  TDVAPDDVVANNIDNDDNEDDDVNLGYKNYGKGSDTETHRYFSSDKPYRP 109

BLAST of Tan0014779 vs. NCBI nr
Match: KAG6594018.1 (hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026358.1 hypothetical protein SDJN02_12860, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-21
Identity = 70/108 (64.81%), Postives = 78/108 (72.22%), Query Frame = 0

Query: 1   MIMMKRALLLLAALLLLLMMADAAMQGVVENKGARKLAQDFSGRTPKVLDDAIESEHEDI 60
           M MMKR LLL  A+ LLL+  DA M  V++ K ARKLAQ FSG+ PK          ED 
Sbjct: 1   MTMMKRTLLLF-AVFLLLVFTDATMHSVIKKKDARKLAQSFSGQIPKTGVFGGVKYSEDA 60

Query: 61  DAAQADVGSNNNENNNEDDDENLGYKNYGKGSDTETHRYFSSDKPYRP 109
           D AQADVG NNNE   ++DDENLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  DVAQADVGMNNNE---DEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104

BLAST of Tan0014779 vs. NCBI nr
Match: KAG6575119.1 (hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17
Identity = 67/111 (60.36%), Postives = 79/111 (71.17%), Query Frame = 0

Query: 3   MMKRALLLLAALLLLLMMADAAMQGVVENKGARKLAQDFSGRT---PKVLDDAIESEHED 62
           MMK+ L+LL  + LLL+M DAAM GVVE K ARKLA+   G+T    +V     E   ED
Sbjct: 1   MMKKVLVLL-VVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPED 60

Query: 63  ID-AAQADVGSN-NNENNNEDDDENLGYKNYGKGSDTETHRYFSSDKPYRP 109
           ++    ADV +N +N NN +DDDENLGYKNYGKGSDTETHRYFSSDKPY P
Sbjct: 61  VEVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110

BLAST of Tan0014779 vs. NCBI nr
Match: KAG7013689.1 (hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17
Identity = 67/111 (60.36%), Postives = 79/111 (71.17%), Query Frame = 0

Query: 3   MMKRALLLLAALLLLLMMADAAMQGVVENKGARKLAQDFSGRT---PKVLDDAIESEHED 62
           MMK+ L+LL  + LLL+M DAAM GVVE K ARKLA+   G+T    +V     E   ED
Sbjct: 21  MMKKVLVLL-VVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPED 80

Query: 63  ID-AAQADVGSN-NNENNNEDDDENLGYKNYGKGSDTETHRYFSSDKPYRP 109
           ++    ADV +N +N NN +DDDENLGYKNYGKGSDTETHRYFSSDKPY P
Sbjct: 81  VEVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 130

BLAST of Tan0014779 vs. ExPASy TrEMBL
Match: A0A0A0KGD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.7e-23
Identity = 82/112 (73.21%), Postives = 88/112 (78.57%), Query Frame = 0

Query: 1   MIMMKRALLLLAALLLLLMMADAAMQGVVENKGARKLAQDFS-GRTPK--VLDDAIESEH 60
           MIMMKR LLL AALLLLL MADA    +VE KGARKLAQ FS  RTPK  V +DA ES+ 
Sbjct: 1   MIMMKRVLLLFAALLLLL-MADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDL 60

Query: 61  EDIDAAQADVGSNNNEN-NNEDDDENLGYKNYGKGSDTETHRYFSSDKPYRP 109
           E+ D A  DV +NNN N +NEDDD NLGYKNYGKGSDTETHRYFSSDKPYRP
Sbjct: 61  ENTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

BLAST of Tan0014779 vs. ExPASy TrEMBL
Match: A0A5D3BV16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00430 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21
Identity = 77/110 (70.00%), Postives = 82/110 (74.55%), Query Frame = 0

Query: 3   MMKRALLLLAALLLLLMMADAAMQGVVENKGARKLAQDFSG-RTPK--VLDDAIESEHED 62
           MMKR LLL A LLLLL MADAAM  VVE KGARKLAQ     R PK  V +DA E E + 
Sbjct: 1   MMKRVLLLFAVLLLLL-MADAAMSNVVEKKGARKLAQGSGDRRIPKAEVFNDANEPELKK 60

Query: 63  IDAAQADVGSNNNEN-NNEDDDENLGYKNYGKGSDTETHRYFSSDKPYRP 109
            D A  DV +NN +N +NEDDD NLGYKNYGKGSDTETHRYFSSDKPYRP
Sbjct: 61  TDVAPDDVVANNIDNDDNEDDDVNLGYKNYGKGSDTETHRYFSSDKPYRP 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_004150985.15.6e-2373.21uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical ... [more]
TYK02960.14.0e-2170.00uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa][more]
KAG6594018.14.0e-2164.81hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575119.12.7e-1760.36hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7013689.12.7e-1760.36hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A0A0KGD62.7e-2373.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1[more]
A0A5D3BV161.9e-2170.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0014779.1Tan0014779.1mRNA