Tan0014763 (gene) Snake gourd v1

Overview


Name	Tan0014763
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribosomal protein
Location	LG01: 107810506 .. 107811364 (+)
RNA-Seq Expression	Tan0014763
Synteny	Tan0014763

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTATGTTAAACTGTCTTTCCATTTAGGGTTGTAGCTTAATCCGTCATGGGTTTCTTTGCATTCACTTAATGTAGTTTTGTTGTTTTGTTGGTTTATATCTGCAGCAAACTTCAGAGTGAAGCGTTGAGAGAAGTCATTTCATCTATCTTCGGTGATAGCAGTGAAAAGAAGCGCAACTTTACTGAGACCATTGAACTTCAGATTGGACTAAAGAACTATGATCTACAGAAGGACAAGTGTTTCAGTGGGTCAGTGAAGTTGCCCCACATTCCTCGCCCCAAGATGAAGATTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGTAAACTTTATCGGCTCTTAACCTATTCACTTGTCATGTCTGGTAAATATAGTCTTTGTTTAATTTTTCTTCCCTGTGGATATATAGATGGCAATGTCTACTTATTCTTTAGTAATATAATGTGGGGTCCTCAGTTTGTTGTAGTTTGTGTTACAATTCTAATTGCTACTGTGTTTAAGAATATCTATATGAAAATTTCAACGGCAATAAAATCTGGATAATGTTTATATTTTATATAGTCTTTTCTATTTTTGTTTAATATGTATGATGTTGAATTCTTTAGGATCATTATTATTAACTTTGTACCTTGTATTGGAAAATAATATACTTATTTGGCATTTCATGCATGGTAAATTGAAATCAAAGACTGTTACACTTCAACTTTGTCCTCTCACTTTAAATTTGTGGATGTCTTATTATAGGCAGAGAAGATTGGTTTGGATTATATGGATGTGGAGGGTTTGAAGAAGCTTAACAAGAACAAGAAGTTGGTGAACTTGCCAAGAAATATCATGCATTTTAGCATCTGA

mRNA sequence

ATGAGCAAACTTCAGAGTGAAGCGTTGAGAGAAGTCATTTCATCTATCTTCGGTGATAGCAGTGAAAAGAAGCGCAACTTTACTGAGACCATTGAACTTCAGATTGGACTAAAGAACTATGATCTACAGAAGGACAAGTGTTTCAGTGGGTCAGTGAAGTTGCCCCACATTCCTCGCCCCAAGATGAAGATTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGCAGAGAAGATTGGTTTGGATTATATGGATGTGGAGGGTTTGAAGAAGCTTAACAAGAACAAGAAGTTGGTGAACTTGCCAAGAAATATCATGCATTTTAGCATCTGA

Coding sequence (CDS)

ATGAGCAAACTTCAGAGTGAAGCGTTGAGAGAAGTCATTTCATCTATCTTCGGTGATAGCAGTGAAAAGAAGCGCAACTTTACTGAGACCATTGAACTTCAGATTGGACTAAAGAACTATGATCTACAGAAGGACAAGTGTTTCAGTGGGTCAGTGAAGTTGCCCCACATTCCTCGCCCCAAGATGAAGATTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGCAGAGAAGATTGGTTTGGATTATATGGATGTGGAGGGTTTGAAGAAGCTTAACAAGAACAAGAAGTTGGTGAACTTGCCAAGAAATATCATGCATTTTAGCATCTGA

Protein sequence

MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVNLPRNIMHFSI

Homology

[Close]

BLAST of Tan0014763 vs. ExPASy Swiss-Prot
Match: B8B9K6 (60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-40
Identity = 82/99 (82.83%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSE L+E IS + G+S EK R FTET+ELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMK+CMLGDA HVEEAEKIGLDYMDVE LKK+NKNKKLV
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. ExPASy Swiss-Prot
Match: B7F845 (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-40
Identity = 82/99 (82.83%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSE L+E IS + G+S EK R FTET+ELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMK+CMLGDA HVEEAEKIGLDYMDVE LKK+NKNKKLV
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. ExPASy Swiss-Prot
Match: P59230 (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-39
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEA+RE I++I G S EKKRNF ET+ELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMKICMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLV
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. ExPASy Swiss-Prot
Match: Q8VZB9 (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-39
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEA+RE I++I G S  KKRNF ETIELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMKICMLGDA HVEEAEK+GL+ MDVE LKKLNKNKKLV
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. ExPASy Swiss-Prot
Match: P59231 (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.9e-38
Identity = 84/100 (84.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSE-KKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPR 60
           MSKLQSEA+RE ISSI     E K RNFTETIELQIGLKNYD QKDK FSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           PKMKICMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLV
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLV 100

[Close]

BLAST of Tan0014763 vs. NCBI nr
Match: KAG6570486.1 (Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.7 bits (478), Expect = 2.6e-44
Identity = 96/99 (96.97%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEALRE ISSIFGDSSEKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
Sbjct: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 213

[Close]

BLAST of Tan0014763 vs. NCBI nr
Match: XP_022943718.1 (60S ribosomal protein L10a [Cucurbita moschata] >XP_022943719.1 60S ribosomal protein L10a [Cucurbita moschata] >XP_022985885.1 60S ribosomal protein L10a [Cucurbita maxima] >XP_022985886.1 60S ribosomal protein L10a [Cucurbita maxima] >XP_023513214.1 60S ribosomal protein L10a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.7 bits (478), Expect = 2.6e-44
Identity = 96/99 (96.97%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEALRE ISSIFGDSSEKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
Sbjct: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. NCBI nr
Match: XP_022958674.1 (60S ribosomal protein L10a-like [Cucurbita moschata] >XP_022995143.1 60S ribosomal protein L10a-like [Cucurbita maxima] >XP_023532799.1 60S ribosomal protein L10a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 1.7e-43
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEALRE ISSIFGDS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLV
Sbjct: 61  KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. NCBI nr
Match: KAG6605991.1 (Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.0 bits (471), Expect = 1.7e-43
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEALRE ISSIFGDS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLV
Sbjct: 61  KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. NCBI nr
Match: KAG7035940.1 (60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.1 bits (466), Expect = 6.5e-43
Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 2   SKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRPK 61
           SKLQSEALRE ISSIFGDS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRPK
Sbjct: 169 SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 228

Query: 62  MKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           MK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLV
Sbjct: 229 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLV 266

[Close]

BLAST of Tan0014763 vs. ExPASy TrEMBL
Match: A0A6J1JCI3 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111483802 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 96/99 (96.97%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEALRE ISSIFGDSSEKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
Sbjct: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. ExPASy TrEMBL
Match: A0A6J1FXB0 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111448383 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 96/99 (96.97%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEALRE ISSIFGDSSEKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
Sbjct: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. ExPASy TrEMBL
Match: A0A6J1K725 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111490772 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.2e-44
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEALRE ISSIFGDS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLV
Sbjct: 61  KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. ExPASy TrEMBL
Match: A0A6J1H5S7 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111459828 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.2e-44
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEALRE ISSIFGDS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKNKKLV
Sbjct: 61  KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. ExPASy TrEMBL
Match: A0A6J1G271 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111449992 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.1e-43
Identity = 93/99 (93.94%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEALRE ISSIF DS+EKKRNFTETIELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEALREAISSIFTDSNEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMK+CMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV
Sbjct: 61  KMKLCMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. TAIR 10
Match: AT2G27530.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 163.7 bits (413), Expect = 8.4e-41
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEA+RE I++I G S EKKRNF ET+ELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMKICMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLV
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. TAIR 10
Match: AT2G27530.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 163.7 bits (413), Expect = 8.4e-41
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEA+RE I++I G S EKKRNF ET+ELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMKICMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLV
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. TAIR 10
Match: AT1G08360.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-40
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSEKKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPRP 60
           MSKLQSEA+RE I++I G S  KKRNF ETIELQIGLKNYD QKDK FSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           KMKICMLGDA HVEEAEK+GL+ MDVE LKKLNKNKKLV
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLV 99

[Close]

BLAST of Tan0014763 vs. TAIR 10
Match: AT5G22440.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-39
Identity = 84/100 (84.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSE-KKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPR 60
           MSKLQSEA+RE ISSI     E K RNFTETIELQIGLKNYD QKDK FSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           PKMKICMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLV
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLV 100

[Close]

BLAST of Tan0014763 vs. TAIR 10
Match: AT5G22440.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-39
Identity = 84/100 (84.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MSKLQSEALREVISSIFGDSSE-KKRNFTETIELQIGLKNYDLQKDKCFSGSVKLPHIPR 60
           MSKLQSEA+RE ISSI     E K RNFTETIELQIGLKNYD QKDK FSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61  PKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLV 100
           PKMKICMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLV
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLV 100

The following BLAST results are available for this feature:

BLAST of Tan0014763 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8B9K6	1.1e-40	82.83	60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3...	[more]
B7F845	1.1e-40	82.83	60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE...	[more]
P59230	1.2e-39	83.84	60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=...	[more]
Q8VZB9	2.0e-39	83.84	60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=...	[more]
P59231	2.9e-38	84.00	60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=...	[more]

BLAST of Tan0014763 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570486.1	2.6e-44	96.97	Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022943718.1	2.6e-44	96.97	60S ribosomal protein L10a [Cucurbita moschata] >XP_022943719.1 60S ribosomal pr...	[more]
XP_022958674.1	1.7e-43	93.94	60S ribosomal protein L10a-like [Cucurbita moschata] >XP_022995143.1 60S ribosom...	[more]
KAG6605991.1	1.7e-43	93.94	Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7035940.1	6.5e-43	93.88	60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0014763 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JCI3	1.3e-44	96.97	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111483802 PE=3 SV=1	[more]
A0A6J1FXB0	1.3e-44	96.97	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111448383 PE=3 SV=1	[more]
A0A6J1K725	8.2e-44	93.94	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111490772 PE=3 SV=1	[more]
A0A6J1H5S7	8.2e-44	93.94	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111459828 PE=3 SV=1	[more]
A0A6J1G271	4.1e-43	93.94	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111449992 PE=3 SV=1	[more]

BLAST of Tan0014763 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27530.1	8.4e-41	83.84	Ribosomal protein L1p/L10e family	[more]
AT2G27530.2	8.4e-41	83.84	Ribosomal protein L1p/L10e family	[more]
AT1G08360.1	1.4e-40	83.84	Ribosomal protein L1p/L10e family	[more]
AT5G22440.1	2.1e-39	84.00	Ribosomal protein L1p/L10e family	[more]
AT5G22440.2	2.1e-39	84.00	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.190.20		coord: 1..108 e-value: 1.6E-32 score: 114.1
None	No IPR available	PANTHER	PTHR23105:SF164	60S RIBOSOMAL PROTEIN L10A-3	coord: 2..100
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 2..100
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 23..97 e-value: 9.9E-9 score: 35.2
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 7..87 e-value: 1.97406E-21 score: 82.2319
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014763.1	Tan0014763.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome