Tan0014551 (gene) Snake gourd v1

Overview


Name	Tan0014551
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase domain-containing protein
Location	LG10: 10620892 .. 10621729 (-)
RNA-Seq Expression	Tan0014551
Synteny	Tan0014551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGTAAACATTGGTTGTACTGGGCGTGCCCTACACAACGTAGATTGTGACATGTTTTAAAAGGATTTCTATCATTCATATGCCTTACGAGATTTTAACGACATGCTTGTTGGTTTTCTGAAAAGTTATTATGATTACACAATTACTTTTAACGTTTGATTACAGATGCATATGCTCATAGATGGTCAGGTGATATGATTTACGAGTTAATAGTTTTCTTTTAAACTCAAGTCACTCACTGAGCTTCATAGCTCATTCTTTCAGTGTTTTCCTACTTTTCAGGTAGAGATCGAGCTCCCAGTGCCTGACATCCTGCCATATTCTACTAGAAGCTCCACGAACTTGATATTTTGTACGTGGGTGGTATTGTATAACAAGTCCTTAATGTTGTAGTAATGTTTGAGGGGACTATGTAGTTATAGTTGTATGTGCTTTAGAGGTTGTAGTTGTGTTATTAATGGTTTGGCTTGTTTGTGGTTCTGATGCTTTTGCCCGTTTAGTTTTCAAGAGAGACATAAGAAGTGTTTCTCCTTATGTGTGTTTAGTAGTTGTCAAGCTCCGCTGTGTTATGTTAAAGTGTTCCATATGCGAACATAGTATGTTTATCAGGTAAAACAGGGTCAACAAGTATCGTTAGAGAGGTGAACGATGTTTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAATTACTATGATGGCTTATTCCGATTTTGCCCTTTCGTGTTATCAATTTCAAGTTAAACGAGCAATACATACTCATAGTCCTATTTTAAGTTAG

mRNA sequence

ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGATCGAGCTCCCAGTGCCTGACATCCTGCCATATTCTACTAGAAGCTCCACGAACTTGATATTTTGGTCAACAAGTATCGTTAGAGAGGTGAACGATGTTTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAATTACTATGATGGCTTATTCCGATTTTGCCCTTTCGTGTTATCAATTTCAAGTTAAACGAGCAATACATACTCATAGTCCTATTTTAAGTTAG

Coding sequence (CDS)

ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGATCGAGCTCCCAGTGCCTGACATCCTGCCATATTCTACTAGAAGCTCCACGAACTTGATATTTTGGTCAACAAGTATCGTTAGAGAGGTGAACGATGTTTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAATTACTATGATGGCTTATTCCGATTTTGCCCTTTCGTGTTATCAATTTCAAGTTAAACGAGCAATACATACTCATAGTCCTATTTTAAGTTAG

Protein sequence

MGVLGGPHYIVEIELPVPDILPYSTRSSTNLIFWSTSIVREVNDVCWLHAVCRAKLAGSSGGGVTITMMAYSDFALSCYQFQVKRAIHTHSPILS

Homology

[Close]

BLAST of Tan0014551 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 9.9e-08
Identity = 48/110 (43.64%), Postives = 51/110 (46.36%), Query Frame = 0


Query: 2   GVLGGPHYIV-------------------EIELPVPDILPYSTRSS-------------- 61
           GV GGPHYIV                   EIEL VPD LP S  SS              
Sbjct: 221 GVPGGPHYIVGLVNVGCTGRVLHHIDRSLEIELLVPDTLPTSAESSGSNSSTWLEFDFEL 280

Query: 62  ---------TNLIFW---STSIVREVNDVCWLHAVCRAKLAGSSGGGVTI 67
                     + I W   S  IVRE NDVCWLHAV RAK+AG SGGGVT+
Sbjct: 281 FYKPSDVRTASRICWEVRSAGIVRE-NDVCWLHAVFRAKIAGGSGGGVTV 329

[Close]

BLAST of Tan0014551 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 39/79 (49.37%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 1   MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDV 60
           + VL     +VEIELPVPD LP S  SS +                +FW   IVRE +DV
Sbjct: 24  LSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRE-DDV 83

Query: 61  CWLHAVCRAKLAGSSGGGV 65
           CWLHAV RAK AG  GGGV
Sbjct: 84  CWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Tan0014551 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 39/79 (49.37%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 1   MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDV 60
           + VL     +VEIELPVPD LP S  SS +                +FW   IVRE +DV
Sbjct: 24  LSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRE-DDV 83

Query: 61  CWLHAVCRAKLAGSSGGGV 65
           CWLHAV RAK AG  GGGV
Sbjct: 84  CWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Tan0014551 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 6.4e-07
Identity = 38/68 (55.88%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1   MGVLGGPHYIVEIELPVPDILPYSTRSSTNLIFWSTSIVREVNDVCWLHAVCRAKLAGSS 60
           + VL     +VEIELPVPD LP S  S  +    ST IVR  +DVCWLHAV RAK AG  
Sbjct: 78  LSVLRDNDAVVEIELPVPDTLPTSAESFES-NSRSTGIVRG-DDVCWLHAVFRAKTAGGP 137

Query: 61  GGGVTITM 69
           GGGVT  +
Sbjct: 138 GGGVTFNI 143

[Close]

BLAST of Tan0014551 vs. NCBI nr
Match: TYK11725.1 (uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 8.4e-07
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 1   MGVLGGPHYIVEIELPVPDILPY-----STRSSTNLIFW--STSIVREVNDVCWLHAVCR 60
           + VL     +VEIELPVPD LP      S   + + + W  S  IVR  +DVCWLHAVCR
Sbjct: 85  LSVLCDNDAVVEIELPVPDTLPTLFYKPSDVRAASYVCWEGSAGIVRG-DDVCWLHAVCR 144

Query: 61  AKLAGSSGGGV 65
           AK+AG  GGGV
Sbjct: 145 AKIAGGPGGGV 154

[Close]

BLAST of Tan0014551 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.8e-08
Identity = 48/110 (43.64%), Postives = 51/110 (46.36%), Query Frame = 0


Query: 2   GVLGGPHYIV-------------------EIELPVPDILPYSTRSS-------------- 61
           GV GGPHYIV                   EIEL VPD LP S  SS              
Sbjct: 221 GVPGGPHYIVGLVNVGCTGRVLHHIDRSLEIELLVPDTLPTSAESSGSNSSTWLEFDFEL 280

Query: 62  ---------TNLIFW---STSIVREVNDVCWLHAVCRAKLAGSSGGGVTI 67
                     + I W   S  IVRE NDVCWLHAV RAK+AG SGGGVT+
Sbjct: 281 FYKPSDVRTASRICWEVRSAGIVRE-NDVCWLHAVFRAKIAGGSGGGVTV 329

[Close]

BLAST of Tan0014551 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.2e-08
Identity = 39/79 (49.37%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 1   MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDV 60
           + VL     +VEIELPVPD LP S  SS +                +FW   IVRE +DV
Sbjct: 24  LSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRE-DDV 83

Query: 61  CWLHAVCRAKLAGSSGGGV 65
           CWLHAV RAK AG  GGGV
Sbjct: 84  CWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Tan0014551 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.2e-08
Identity = 39/79 (49.37%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 1   MGVLGGPHYIVEIELPVPDILPYSTRSSTN---------------LIFWSTSIVREVNDV 60
           + VL     +VEIELPVPD LP S  SS +                +FW   IVRE +DV
Sbjct: 24  LSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHVEMFWLAGIVRE-DDV 83

Query: 61  CWLHAVCRAKLAGSSGGGV 65
           CWLHAV RAK AG  GGGV
Sbjct: 84  CWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Tan0014551 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.1e-07
Identity = 38/68 (55.88%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1   MGVLGGPHYIVEIELPVPDILPYSTRSSTNLIFWSTSIVREVNDVCWLHAVCRAKLAGSS 60
           + VL     +VEIELPVPD LP S  S  +    ST IVR  +DVCWLHAV RAK AG  
Sbjct: 78  LSVLRDNDAVVEIELPVPDTLPTSAESFES-NSRSTGIVRG-DDVCWLHAVFRAKTAGGP 137

Query: 61  GGGVTITM 69
           GGGVT  +
Sbjct: 138 GGGVTFNI 143

[Close]

BLAST of Tan0014551 vs. ExPASy TrEMBL
Match: A0A5D3CJL4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00370 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 1   MGVLGGPHYIVEIELPVPDILPY-----STRSSTNLIFW--STSIVREVNDVCWLHAVCR 60
           + VL     +VEIELPVPD LP      S   + + + W  S  IVR  +DVCWLHAVCR
Sbjct: 85  LSVLCDNDAVVEIELPVPDTLPTLFYKPSDVRAASYVCWEGSAGIVRG-DDVCWLHAVCR 144

Query: 61  AKLAGSSGGGV 65
           AK+AG  GGGV
Sbjct: 145 AKIAGGPGGGV 154

The following BLAST results are available for this feature:

BLAST of Tan0014551 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0014551 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08801.1	9.9e-08	43.64	hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]	[more]
TYK27998.1	1.7e-07	49.37	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	1.7e-07	49.37	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0060199.1	6.4e-07	55.88	uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9...	[more]
TYK11725.1	8.4e-07	52.11	uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0014551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CAC6	4.8e-08	43.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DX39	8.2e-08	49.37	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	8.2e-08	49.37	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3BAD1	3.1e-07	55.88	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CJL4	4.1e-07	52.11	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Tan0014551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014551.1	Tan0014551.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity