Tan0014373 (gene) Snake gourd v1

Overview


Name	Tan0014373
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG11: 16552925 .. 16553428 (-)
RNA-Seq Expression	Tan0014373
Synteny	Tan0014373

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCACCTTCCTCTTCCTTTCCTATTTCTTCTCAATCTAAACTGTAAAATTCATCACCATCACAACCCTCCAAATGGCCGCCGCCGCCATCGCCGCCGCGCGCGAAGCTCCACGCTGGATTCCAATACGAGGCCAAGTTCTCCGCCGTGTTCTTAAAAAACTCTTTTTCTTCTGCCTCTGCTCCGCCGCCGACCGGACAACTCCTCCTCCGCCGCCGCCGTCTTCCTCCTCTCGTGTTTTTCCTCAAAATTTCTTTTAGAAAAAACAAGTGGGAAAATCTTCCGATCGCCACCGACGGGGTCGGACTTTGAAGTTCGAATTGAAGAGAAATGATGCGAGGATTTTACCGCTTCTCTGTTTCATAAATTTTCATCCTCTCTTACATTTTTTTCGTTTGTATTTCCAAAATCATTAATTTTTTTCTTTTTTAATTCAACAATTAGCAGATGGGTCCGAACCATCTATGCCTTCAGATGGTAGAAGGGGAGTCGGGATCTAATACATG

mRNA sequence

CGCACCTTCCTCTTCCTTTCCTATTTCTTCTCAATCTAAACTGTAAAATTCATCACCATCACAACCCTCCAAATGGCCGCCGCCGCCATCGCCGCCGCGCGCGAAGCTCCACGCTGGATTCCAATACGAGGCCAAGTTCTCCGCCGTGTTCTTAAAAAACTCTTTTTCTTCTGCCTCTGCTCCGCCGCCGACCGGACAACTCCTCCTCCGCCGCCGCCGTCTTCCTCCTCTCGTGTTTTTCCTCAAAATTTCTTTTAGAAAAAACAAGTGGGAAAATCTTCCGATCGCCACCGACGGGGTCGGACTTTGAAGTTCGAATTGAAGAGAAATGATGCGAGGATTTTACCGCTTCTCTGTTTCATAAATTTTCATCCTCTCTTACATTTTTTTCGTTTGTATTTCCAAAATCATTAATTTTTTTCTTTTTTAATTCAACAATTAGCAGATGGGTCCGAACCATCTATGCCTTCAGATGGTAGAAGGGGAGTCGGGATCTAATACATG

Coding sequence (CDS)

ATGGCCGCCGCCGCCATCGCCGCCGCGCGCGAAGCTCCACGCTGGATTCCAATACGAGGCCAAGTTCTCCGCCGTGTTCTTAAAAAACTCTTTTTCTTCTGCCTCTGCTCCGCCGCCGACCGGACAACTCCTCCTCCGCCGCCGCCGTCTTCCTCCTCTCGTGTTTTTCCTCAAAATTTCTTTTAG

Protein sequence

MAAAAIAAAREAPRWIPIRGQVLRRVLKKLFFFCLCSAADRTTPPPPPPSSSSRVFPQNFF

Homology

[Close]

BLAST of Tan0014373 vs. NCBI nr
Match: KAG6579170.1 (hypothetical protein SDJN03_23618, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 41/64 (64.06%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 2  AAAAIAAAREAPRWIPIRGQVLRRVLKKLFFFCLCSAADRTTPPPPPPS------SSSRV 60
          AA A A A   PR IP RG VLRRVL+KLFFFC+CSAA+   PPPPPP       SSSRV
Sbjct: 5  AATATAVAVTTPRLIPKRGAVLRRVLEKLFFFCICSAANPKAPPPPPPPPPPQFFSSSRV 64

[Close]

BLAST of Tan0014373 vs. NCBI nr
Match: KGN49746.1 (hypothetical protein Csa_017810 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-07
Identity = 35/48 (72.92%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 11 EAPRWIPIRGQVLRRVLKKLFFFCLCSAADRTTPP--PPPPSSSSRVF 57
          EAPRWIP RG+VLRRVLK LFFFCLCS      PP  PPP  SSSRVF
Sbjct: 5  EAPRWIPKRGEVLRRVLKNLFFFCLCS------PPALPPPTPSSSRVF 46

[Close]

BLAST of Tan0014373 vs. NCBI nr
Match: KAG6594821.1 (hypothetical protein SDJN03_11374, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 6.0e-06
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 7  AAAREAPRWIPIRGQVLRRVLKKLFFFCLCSAADRTTPPPPPPSSSSR 55
          AA   APRWIP RGQVLRR+LKKLFF C CS+       PPPPS++ R
Sbjct: 51 AATGAAPRWIPKRGQVLRRILKKLFFLCFCSS-------PPPPSAALR 91

[Close]

BLAST of Tan0014373 vs. ExPASy TrEMBL
Match: A0A0A0KPU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G098990 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.3e-08
Identity = 35/48 (72.92%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 11 EAPRWIPIRGQVLRRVLKKLFFFCLCSAADRTTPP--PPPPSSSSRVF 57
          EAPRWIP RG+VLRRVLK LFFFCLCS      PP  PPP  SSSRVF
Sbjct: 5  EAPRWIPKRGEVLRRVLKNLFFFCLCS------PPALPPPTPSSSRVF 46

The following BLAST results are available for this feature:

BLAST of Tan0014373 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0014373 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579170.1	2.3e-10	64.06	hypothetical protein SDJN03_23618, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN49746.1	1.1e-07	72.92	hypothetical protein Csa_017810 [Cucumis sativus]	[more]
KAG6594821.1	6.0e-06	62.50	hypothetical protein SDJN03_11374, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0014373 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPU0	5.3e-08	72.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G098990 PE=4 SV=1	[more]

BLAST of Tan0014373 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014373.1	Tan0014373.1	mRNA