Tan0014313 (gene) Snake gourd v1

Overview


Name	Tan0014313
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	LG11: 15427866 .. 15428645 (-)
RNA-Seq Expression	Tan0014313
Synteny	Tan0014313

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTCGTTCACTAAATGTAAAGAAAGACATATTTCGCCCTCGAGATGATAATGAAGAACTACTTGGTCTTGAAGTACCATATCTTAGTGCAATTGGTGCACTTATGTATCTAGCTAATAACACAAGACTAGATATTGCATTTTCAGTAAATTTATTAGCTAGATATAGTTCATGTCCTACAAAAAGACATTGAAACGGAGTTAAGCATGTACTCCGATATCTTCGAGAGACAATTGATATGAGTTTATTTTATTCTAACAAATCCAATTTTGATCTAGTTGGTTATGCAGATTCTGGTTATCTATCCGATCCACACAAAGCTAGATCTCAGACAGGTTATCTATTTACATGTGGGGGAACTGCTATATCATGGCGATCAGTGAAACAAACTATAACAACCACTTCTTCAAATCATGCTGAAATCCTCGCTATTCATGAAGCGAGTCGAGAATGTGTATGGCTAAGATCGATGACACAACACATTCGTGAGACATGTGGCTTGTCTTCGAGTAAAGCTTTTCCAACAATATTATACGAAGACAACACAACATGTATAGCTCAAATCAAAGGAGGATATATTAAAAGAGATAGAATGAAACATATCTCTCCAAAGCTTTTCTACACTCATGACCTTGAAGAAAATGGCGACATCTTAGTACAACAGATTTGTTCGAAAGATAACTTGGCAGACATATTTACAAAGGCATTACCAACTACAACATTTGAGAAATTGGTTCACAGTATTAGGATGCGACGACTCAGAGATCTCAACTAA

mRNA sequence

ATGGAAGTTCGTTCACTAAATGTAAAGAAAGACATATTTCGCCCTCGAGATGATAATGAAGAACTACTTGGTCTTGAAGTACCATATCTTAGTGCAATTGGTGCACTTATGTATCTAGCTAATAACACAAGACTAGATATTGCATTTTCACATGTACTCCGATATCTTCGAGAGACAATTGATATGAGTTTATTTTATTCTAACAAATCCAATTTTGATCTAGTTGGTTATGCAGATTCTGGTTATCTATCCGATCCACACAAAGCTAGATCTCAGACAGGTTATCTATTTACATGTGGGGGAACTGCTATATCATGGCGATCAGTGAAACAAACTATAACAACCACTTCTTCAAATCATGCTGAAATCCTCGCTATTCATGAAGCGAGTCGAGAATGTGTATGGCTAAGATCGATGACACAACACATTCGTGAGACATGTGGCTTGTCTTCGAGTAAAGCTTTTCCAACAATATTATACGAAGACAACACAACATGTATAGCTCAAATCAAAGGAGGATATATTAAAAGAGATAGAATGAAACATATCTCTCCAAAGCTTTTCTACACTCATGACCTTGAAGAAAATGGCGACATCTTAGTACAACAGATTTGTTCGAAAGATAACTTGGCAGACATATTTACAAAGGCATTACCAACTACAACATTTGAGAAATTGGTTCACAGTATTAGGATGCGACGACTCAGAGATCTCAACTAA

Coding sequence (CDS)

ATGGAAGTTCGTTCACTAAATGTAAAGAAAGACATATTTCGCCCTCGAGATGATAATGAAGAACTACTTGGTCTTGAAGTACCATATCTTAGTGCAATTGGTGCACTTATGTATCTAGCTAATAACACAAGACTAGATATTGCATTTTCACATGTACTCCGATATCTTCGAGAGACAATTGATATGAGTTTATTTTATTCTAACAAATCCAATTTTGATCTAGTTGGTTATGCAGATTCTGGTTATCTATCCGATCCACACAAAGCTAGATCTCAGACAGGTTATCTATTTACATGTGGGGGAACTGCTATATCATGGCGATCAGTGAAACAAACTATAACAACCACTTCTTCAAATCATGCTGAAATCCTCGCTATTCATGAAGCGAGTCGAGAATGTGTATGGCTAAGATCGATGACACAACACATTCGTGAGACATGTGGCTTGTCTTCGAGTAAAGCTTTTCCAACAATATTATACGAAGACAACACAACATGTATAGCTCAAATCAAAGGAGGATATATTAAAAGAGATAGAATGAAACATATCTCTCCAAAGCTTTTCTACACTCATGACCTTGAAGAAAATGGCGACATCTTAGTACAACAGATTTGTTCGAAAGATAACTTGGCAGACATATTTACAAAGGCATTACCAACTACAACATTTGAGAAATTGGTTCACAGTATTAGGATGCGACGACTCAGAGATCTCAACTAA

Protein sequence

MEVRSLNVKKDIFRPRDDNEELLGLEVPYLSAIGALMYLANNTRLDIAFSHVLRYLRETIDMSLFYSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILYEDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPTTTFEKLVHSIRMRRLRDLN

Homology

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BLAST of Tan0014313 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-21
Identity = 78/239 (32.64%), Postives = 107/239 (44.77%), Query Frame = 0


Query: 15   PRDDNEELLGLE----VPYLSAIGALMYLANNTRLDIA--------------------FS 74
            P   N ELL  +     P  S IG LMY+   TR D+                       
Sbjct: 1163 PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLK 1222

Query: 75   HVLRYLRETIDMSLFYSNKSNFD--LVGYADSGYLSDPHKARSQTGYLFTC-GGTAISWR 134
             VLRYL+ TIDM L +     F+  ++GY DS +       +S TGYLF       I W 
Sbjct: 1223 RVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWN 1282

Query: 135  SVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILYEDNTTCI 194
            + +Q     SS  AE +A+ EA RE +WL+ +   I      +     P  +YEDN  CI
Sbjct: 1283 TKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSI------NIKLENPIKIYEDNQGCI 1342

Query: 195  AQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPTTTFEKL 227
            + I        R KHI  K  +  +  +N  I ++ I +++ LADIFTK LP   F +L
Sbjct: 1343 S-IANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVEL 1394

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BLAST of Tan0014313 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-19
Identity = 70/219 (31.96%), Postives = 104/219 (47.49%), Query Frame = 0


Query: 26   EVPYLSAIGALMYLANNTRLDIAFS--------------------HVLRYLRETIDMSLF 85
            +VPY SA+G+LMY    TR DIA +                     +LRYLR T    L 
Sbjct: 1108 KVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLC 1167

Query: 86   YSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTITTTSSNHAEILA 145
            +   S+  L GY D+    D    +S TGYLFT  G AISW+S  Q     S+  AE +A
Sbjct: 1168 FGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIA 1227

Query: 146  IHEASRECVWLRSMTQHIRETCGLSSSKAFPTILYEDNTTCIAQIKGGYIKRDRMKHISP 205
              E  +E +WL+   Q +    GL   +    ++Y D+ + I   K   +   R KHI  
Sbjct: 1228 ATETGKEMIWLKRFLQEL----GLHQKE---YVVYCDSQSAIDLSKNS-MYHARTKHIDV 1287

Query: 206  KLFYTHDLEENGDILVQQICSKDNLADIFTKALPTTTFE 225
            +  +  ++ ++  + V +I + +N AD+ TK +P   FE
Sbjct: 1288 RYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1317

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BLAST of Tan0014313 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-16
Identity = 52/138 (37.68%), Postives = 69/138 (50.00%), Query Frame = 0


Query: 27  VPYLSAIGALMYLANNTRLDI--------------------AFSHVLRYLRETIDMSLFY 86
           VPYLSA+GA+MYL   TR D+                    A   VLRYL+ T    L +
Sbjct: 4   VPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEF 63

Query: 87  SNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTITTTSSNHAEILAI 145
           +      LVGY+D+ +  D    RS +GYLF   G  +SWRS KQ     SS   E +A+
Sbjct: 64  TRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMAL 123

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BLAST of Tan0014313 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.7e-14
Identity = 61/227 (26.87%), Postives = 97/227 (42.73%), Query Frame = 0


Query: 29   YLSAIGALMYLANNTRLDIAFS--------------------HVLRYLRETIDMSLFYSN 88
            Y   +G+L YLA  TR DI+++                     +LRYL  T +  +F   
Sbjct: 1245 YRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 89   KSNFDLVGYADSGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTITTTSSNHAEILAIHE 148
             +   L  Y+D+ +  D     S  GY+   G   ISW S KQ     SS  AE  ++  
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 149  ASRECVWLRSMTQHIRETCGLSSSKAFPTILYEDNTTCIAQIKGGYIKRDRMKHISPKLF 208
             S E  W+ S+   +    G+  ++  P ++Y DN      +    +   RMKHI+    
Sbjct: 1365 TSSEMQWICSLLTEL----GIRLTR--PPVIYCDNVGA-TYLCANPVFHSRMKHIAIDYH 1424

Query: 209  YTHDLEENGDILVQQICSKDNLADIFTKALPTTTFEKLVHSIRMRRL 236
            +  +  ++G + V  + + D LAD  TK L  T F+     I + R+
Sbjct: 1425 FIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRV 1463

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BLAST of Tan0014313 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-10
Identity = 53/204 (25.98%), Postives = 98/204 (48.04%), Query Frame = 0


Query: 29   YLSAIGALMYLANNTRLDIAFSHVLRYLRETIDMSLFY----SNKSNFDLVGYADSGYLS 88
            Y++ +   +   +   LD+ +  +++++ +T D  L +      K +  LV  +D+ Y +
Sbjct: 1572 YINTLAQHILFPSRQVLDMTY-ELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASYGN 1631

Query: 89   DPHKARSQTGYLFTCGGTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIR 148
             P+  +SQ G +F   G  I  +S K ++T TS+  AEI A+ EA      L +++  ++
Sbjct: 1632 QPY-YKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEA---IPLLNNLSHLVQ 1691

Query: 149  ETCGLSSSKAFPTILYEDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQI 208
            E     + K     L  D+ + I+ IK    ++ R +    K     D     ++ V  I
Sbjct: 1692 EL----NKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYI 1751

Query: 209  CSKDNLADIFTKALPTTTFEKLVH 229
             +K N+AD+ TK LP  TF+ L +
Sbjct: 1752 ETKKNIADVMTKPLPIKTFKLLTN 1766

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BLAST of Tan0014313 vs. NCBI nr
Match: TYK21506.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 402.1 bits (1032), Expect = 3.3e-108
Identity = 206/258 (79.84%), Postives = 218/258 (84.50%), Query Frame = 0


Query: 1   MEVRSLNVKKDIFRPRDDNEELLGLEVPYLSAIGALMYLANNTRLDIAFS---------- 60
           M VRSL+VKKDIFRPR+DNEELLG EVPYLSAIGALMYLANNTR DIAFS          
Sbjct: 1   MLVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSYS 60

Query: 61  ----------HVLRYLRETIDMSLFYSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCG 120
                     HVLRYLR TIDM LFYSNKSNFDLVGYAD+G+LSDPHKARSQTGYLFTC 
Sbjct: 61  PTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCE 120

Query: 121 GTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILY 180
           GTAISWRSVKQT+T TSSNHAEILAIHEASRECVWLRSMT +IRETCGLS SK  PTIL+
Sbjct: 121 GTAISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHYIRETCGLSFSKNLPTILF 180

Query: 181 EDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPT 239
           EDNT CI QIKGGYIK DR KHISPKLFYTHDLEENGDI VQQI SKDNL D+FTKAL T
Sbjct: 181 EDNTACITQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLVDLFTKALLT 240

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BLAST of Tan0014313 vs. NCBI nr
Match: KAA0067250.1 (Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa])

HSP 1 Score: 397.1 bits (1019), Expect = 1.1e-106
Identity = 205/258 (79.46%), Postives = 215/258 (83.33%), Query Frame = 0


Query: 1   MEVRSLNVKKDIFRPRDDNEELLGLEVPYLSAIGALMYLANNTRLDIAFS---------- 60
           M VRSL+VKKDIFRPR+DNEELLG EVPYLSAIGALM LANNTR DIAFS          
Sbjct: 11  MVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMCLANNTRPDIAFSVNLLARYSSS 70

Query: 61  ----------HVLRYLRETIDMSLFYSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCG 120
                     HVLRYLR TIDMSLFYSNKSNFDLVGYAD+GYLSDP KARSQ GYLFT G
Sbjct: 71  PTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPDKARSQIGYLFTWG 130

Query: 121 GTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILY 180
           GTAISWRSVKQT+T TSSNHAEILAIHE SRECVWLRSMT HIRETCGLS SK  PTIL+
Sbjct: 131 GTAISWRSVKQTMTATSSNHAEILAIHEVSRECVWLRSMTHHIRETCGLSFSKNLPTILF 190

Query: 181 EDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPT 239
           EDNT CIAQIKGGYIK DR KH+SPKLFYTH+LEENGDI VQQI SKDNL D+FTKALPT
Sbjct: 191 EDNTACIAQIKGGYIKGDRTKHMSPKLFYTHELEENGDISVQQISSKDNLVDLFTKALPT 250

[Close]

BLAST of Tan0014313 vs. NCBI nr
Match: ERM98543.1 (hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda])

HSP 1 Score: 372.1 bits (954), Expect = 3.6e-99
Identity = 187/259 (72.20%), Postives = 209/259 (80.69%), Query Frame = 0


Query: 1   MEVRSLNVKKDIFRPRDDNEELLGLEVPYLSAIGALMYLANNTRLDIAFS---------- 60
           M VRSL+V+KD FRPR+++EELLG EVPYLSAIGALMYLAN TR DIAFS          
Sbjct: 23  MVVRSLDVEKDPFRPREEHEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARFSSA 82

Query: 61  ----------HVLRYLRETIDMSLFYSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCG 120
                     H+LRYL+ TID  LFYSN     L+GYAD+GYLSDPHKARSQTGYLFTCG
Sbjct: 83  PTYRHWKGIKHILRYLQGTIDKGLFYSNNCGSQLIGYADAGYLSDPHKARSQTGYLFTCG 142

Query: 121 GTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILY 180
            TAISWRS KQT+  TSSNHAEILAIHEASRECVWLRSMTQHIR TCGL+S+K  PTILY
Sbjct: 143 DTAISWRSTKQTLVATSSNHAEILAIHEASRECVWLRSMTQHIRGTCGLTSNKEVPTILY 202

Query: 181 EDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPT 240
           EDN  CIAQ+KGGYIK DR KHISPK F+TH+L+ENGDI VQQI S DNLAD+FTK+LPT
Sbjct: 203 EDNAACIAQLKGGYIKGDRTKHISPKFFFTHNLQENGDIDVQQIRSSDNLADLFTKSLPT 262

[Close]

BLAST of Tan0014313 vs. NCBI nr
Match: KAF7137709.1 (hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii])

HSP 1 Score: 362.1 bits (928), Expect = 3.8e-96
Identity = 183/259 (70.66%), Postives = 205/259 (79.15%), Query Frame = 0


Query: 1    MEVRSLNVKKDIFRPRDDNEELLGLEVPYLSAIGALMYLANNTRLDIAFS---------- 60
            M VRSL+V KD FRP ++ E++LG EVPY+SAIGALMYLAN TR DIAFS          
Sbjct: 950  MVVRSLDVNKDPFRPLEEGEDILGPEVPYMSAIGALMYLANCTRPDIAFSVNLLARYSSA 1009

Query: 61   ----------HVLRYLRETIDMSLFYSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCG 120
                      H+ RYLR TID+ LFYSN S   L+GYAD+GYLSDPHKARSQTGY+FTCG
Sbjct: 1010 PTQRHWKGIKHIFRYLRGTIDLGLFYSNGSASQLIGYADAGYLSDPHKARSQTGYVFTCG 1069

Query: 121  GTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILY 180
            G AISWRSVKQT+T TSSNH+EI+AIHE SRECVWLRSM QHIRE CGLSS K  PTILY
Sbjct: 1070 GAAISWRSVKQTLTATSSNHSEIIAIHETSRECVWLRSMIQHIREKCGLSSIKDCPTILY 1129

Query: 181  EDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPT 240
            EDN  CI QIKGGYIK DR KHISPK FYTHDL++NGDI VQQI S DNLAD+FTKALPT
Sbjct: 1130 EDNAACITQIKGGYIKGDRTKHISPKFFYTHDLQKNGDIDVQQIRSSDNLADLFTKALPT 1189

[Close]

BLAST of Tan0014313 vs. NCBI nr
Match: KAF7152015.1 (hypothetical protein RHSIM_Rhsim01G0238600 [Rhododendron simsii])

HSP 1 Score: 359.0 bits (920), Expect = 3.2e-95
Identity = 180/259 (69.50%), Postives = 203/259 (78.38%), Query Frame = 0


Query: 1    MEVRSLNVKKDIFRPRDDNEELLGLEVPYLSAIGALMYLANNTRLDIAFS---------- 60
            M VRSL+V KD FRP ++ E++LG EVPY+SAIGALMYLAN TR DIAFS          
Sbjct: 954  MVVRSLDVNKDPFRPLEEGEDILGPEVPYMSAIGALMYLANCTRPDIAFSVNLLARYSSA 1013

Query: 61   ----------HVLRYLRETIDMSLFYSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCG 120
                      H+ RYLR T+D+ LFYS  S   L+GYAD+GYLSDPHKARSQTGY+F CG
Sbjct: 1014 PTQRHWKGIKHIFRYLRGTVDLGLFYSKGSTSQLIGYADAGYLSDPHKARSQTGYVFMCG 1073

Query: 121  GTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILY 180
            G AISWRSVKQT+T TSSNH+EI+AIHE SRECVWLRSM QHIRE CGLSS K +PTILY
Sbjct: 1074 GAAISWRSVKQTLTATSSNHSEIIAIHETSRECVWLRSMIQHIREKCGLSSIKDYPTILY 1133

Query: 181  EDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPT 240
            EDN  CI QIKGGYIK DR KHISPK FYTHDL++NGDI VQQI S DNLAD+FTKALPT
Sbjct: 1134 EDNAACITQIKGGYIKGDRTKHISPKFFYTHDLQKNGDIDVQQIRSSDNLADVFTKALPT 1193

[Close]

BLAST of Tan0014313 vs. ExPASy TrEMBL
Match: A0A5D3DD63 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00010 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.6e-108
Identity = 206/258 (79.84%), Postives = 218/258 (84.50%), Query Frame = 0


Query: 1   MEVRSLNVKKDIFRPRDDNEELLGLEVPYLSAIGALMYLANNTRLDIAFS---------- 60
           M VRSL+VKKDIFRPR+DNEELLG EVPYLSAIGALMYLANNTR DIAFS          
Sbjct: 1   MLVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSYS 60

Query: 61  ----------HVLRYLRETIDMSLFYSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCG 120
                     HVLRYLR TIDM LFYSNKSNFDLVGYAD+G+LSDPHKARSQTGYLFTC 
Sbjct: 61  PTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCE 120

Query: 121 GTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILY 180
           GTAISWRSVKQT+T TSSNHAEILAIHEASRECVWLRSMT +IRETCGLS SK  PTIL+
Sbjct: 121 GTAISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHYIRETCGLSFSKNLPTILF 180

Query: 181 EDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPT 239
           EDNT CI QIKGGYIK DR KHISPKLFYTHDLEENGDI VQQI SKDNL D+FTKAL T
Sbjct: 181 EDNTACITQIKGGYIKGDRTKHISPKLFYTHDLEENGDISVQQISSKDNLVDLFTKALLT 240

[Close]

BLAST of Tan0014313 vs. ExPASy TrEMBL
Match: A0A5D3CKU4 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 5.1e-107
Identity = 205/258 (79.46%), Postives = 215/258 (83.33%), Query Frame = 0


Query: 1   MEVRSLNVKKDIFRPRDDNEELLGLEVPYLSAIGALMYLANNTRLDIAFS---------- 60
           M VRSL+VKKDIFRPR+DNEELLG EVPYLSAIGALM LANNTR DIAFS          
Sbjct: 11  MVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMCLANNTRPDIAFSVNLLARYSSS 70

Query: 61  ----------HVLRYLRETIDMSLFYSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCG 120
                     HVLRYLR TIDMSLFYSNKSNFDLVGYAD+GYLSDP KARSQ GYLFT G
Sbjct: 71  PTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPDKARSQIGYLFTWG 130

Query: 121 GTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILY 180
           GTAISWRSVKQT+T TSSNHAEILAIHE SRECVWLRSMT HIRETCGLS SK  PTIL+
Sbjct: 131 GTAISWRSVKQTMTATSSNHAEILAIHEVSRECVWLRSMTHHIRETCGLSFSKNLPTILF 190

Query: 181 EDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPT 239
           EDNT CIAQIKGGYIK DR KH+SPKLFYTH+LEENGDI VQQI SKDNL D+FTKALPT
Sbjct: 191 EDNTACIAQIKGGYIKGDRTKHMSPKLFYTHELEENGDISVQQISSKDNLVDLFTKALPT 250

[Close]

BLAST of Tan0014313 vs. ExPASy TrEMBL
Match: U5CXL6 (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s04311p00004950 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.8e-99
Identity = 187/259 (72.20%), Postives = 209/259 (80.69%), Query Frame = 0


Query: 1   MEVRSLNVKKDIFRPRDDNEELLGLEVPYLSAIGALMYLANNTRLDIAFS---------- 60
           M VRSL+V+KD FRPR+++EELLG EVPYLSAIGALMYLAN TR DIAFS          
Sbjct: 23  MVVRSLDVEKDPFRPREEHEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARFSSA 82

Query: 61  ----------HVLRYLRETIDMSLFYSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCG 120
                     H+LRYL+ TID  LFYSN     L+GYAD+GYLSDPHKARSQTGYLFTCG
Sbjct: 83  PTYRHWKGIKHILRYLQGTIDKGLFYSNNCGSQLIGYADAGYLSDPHKARSQTGYLFTCG 142

Query: 121 GTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILY 180
            TAISWRS KQT+  TSSNHAEILAIHEASRECVWLRSMTQHIR TCGL+S+K  PTILY
Sbjct: 143 DTAISWRSTKQTLVATSSNHAEILAIHEASRECVWLRSMTQHIRGTCGLTSNKEVPTILY 202

Query: 181 EDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPT 240
           EDN  CIAQ+KGGYIK DR KHISPK F+TH+L+ENGDI VQQI S DNLAD+FTK+LPT
Sbjct: 203 EDNAACIAQLKGGYIKGDRTKHISPKFFFTHNLQENGDIDVQQIRSSDNLADLFTKSLPT 262

[Close]

BLAST of Tan0014313 vs. ExPASy TrEMBL
Match: A0A2N9FE48 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13021 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 2.1e-97
Identity = 187/258 (72.48%), Postives = 207/258 (80.23%), Query Frame = 0


Query: 1   MEVRSLNVKKDIFRPRDDNEELLGLEVPYLSAIGALMYLANNTRLDIAFS---------- 60
           M VRSL+VKKD FRP++  EE LG EVPYLSAIGALMYLAN TR DIAFS          
Sbjct: 113 MVVRSLDVKKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSA 172

Query: 61  ----------HVLRYLRETIDMSLFYSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCG 120
                     HVLRYLR T DM LFY NKSN  LVGYAD+GYLSDPHK RSQTGYLFTCG
Sbjct: 173 PTLRHWNGVKHVLRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCG 232

Query: 121 GTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILY 180
            TAISWRSVKQTI+ TSSNH+EI+AIHEASRECVWLRS+ QHIRE CGLSS K  PTILY
Sbjct: 233 NTAISWRSVKQTISATSSNHSEIIAIHEASRECVWLRSVIQHIREKCGLSSIKDNPTILY 292

Query: 181 EDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPT 239
           EDN  CI QI+GGYIK DR+KHISPK FYTH+L+++GDI V+QI S +NLADIFTK+LPT
Sbjct: 293 EDNAACITQIRGGYIKGDRIKHISPKFFYTHELQKSGDIDVKQIRSSENLADIFTKSLPT 352

[Close]

BLAST of Tan0014313 vs. ExPASy TrEMBL
Match: A0A2N9IR78 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54505 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.7e-97
Identity = 187/258 (72.48%), Postives = 206/258 (79.84%), Query Frame = 0


Query: 1   MEVRSLNVKKDIFRPRDDNEELLGLEVPYLSAIGALMYLANNTRLDIAFS---------- 60
           M VRSL+VKKD FRP++  EE LG EVPYLSAIGALMYLAN TR DIAFS          
Sbjct: 342 MVVRSLDVKKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSA 401

Query: 61  ----------HVLRYLRETIDMSLFYSNKSNFDLVGYADSGYLSDPHKARSQTGYLFTCG 120
                     HVLRYLR T DM LFY NKSN  LVGYAD+GYLSDPHK RSQTGYLFTCG
Sbjct: 402 PTLRHWNGVKHVLRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCG 461

Query: 121 GTAISWRSVKQTITTTSSNHAEILAIHEASRECVWLRSMTQHIRETCGLSSSKAFPTILY 180
            TAISWRSVKQTI+ TSSNH+EI+AIHEASRECVWLRS+ QHIRE CGLSS K  PTILY
Sbjct: 462 NTAISWRSVKQTISATSSNHSEIIAIHEASRECVWLRSVIQHIREKCGLSSIKDNPTILY 521

Query: 181 EDNTTCIAQIKGGYIKRDRMKHISPKLFYTHDLEENGDILVQQICSKDNLADIFTKALPT 239
           EDN  CI QI+GGYIK DR KHISPK FYTH+L+++GDI V+QI S +NLADIFTK+LPT
Sbjct: 522 EDNAACITQIRGGYIKGDRTKHISPKFFYTHELQKSGDIDVKQIRSSENLADIFTKSLPT 581

[Close]

BLAST of Tan0014313 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 80.1 bits (196), Expect = 2.7e-15
Identity = 59/175 (33.71%), Postives = 84/175 (48.00%), Query Frame = 0


Query: 29  YLSAIGALMYLANNTRLDIAFS--------------------HVLRYLRETIDMSLFYSN 88
           Y   IG LMYL   TRLDI+F+                     +L Y++ T+   LFYS+
Sbjct: 378 YRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 89  KSNFDLVGYADSGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTITTTSSNHAEILAIHE 148
           ++   L  ++D+ + S     RS  GY    G + ISW+S KQ + + SS  AE  A+  
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 149 ASRECVWLRSMTQHIRETCGLSSSKAFPTILYEDNTTCIAQIKGGYIKRDRMKHI 184
           A+ E +WL    Q  RE   L    + PT+L+ DNT  I  I    +  +R KHI
Sbjct: 498 ATDEMMWL---AQFFRE---LQLPLSKPTLLFCDNTAAI-HIATNAVFHERTKHI 544

The following BLAST results are available for this feature:

BLAST of Tan0014313 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	1.9e-21	32.64	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.3e-19	31.96	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	1.1e-16	37.68	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q94HW2	3.7e-14	26.87	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	2.5e-10	25.98	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Tan0014313 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21506.1	3.3e-108	79.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067250.1	1.1e-106	79.46	Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa]	[more]
ERM98543.1	3.6e-99	72.20	hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda]	[more]
KAF7137709.1	3.8e-96	70.66	hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]	[more]
KAF7152015.1	3.2e-95	69.50	hypothetical protein RHSIM_Rhsim01G0238600 [Rhododendron simsii]	[more]

BLAST of Tan0014313 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DD63	1.6e-108	79.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CKU4	5.1e-107	79.46	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1	[more]
U5CXL6	1.8e-99	72.20	Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s043...	[more]
A0A2N9FE48	2.1e-97	72.48	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9IR78	3.7e-97	72.48	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Tan0014313 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.7e-15	33.71	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 75..220 e-value: 4.58969E-50 score: 158.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014313.1	Tan0014313.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding