Tan0014308 (gene) Snake gourd v1

Overview


Name	Tan0014308
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	LG06: 69708287 .. 69708625 (+)
RNA-Seq Expression	Tan0014308
Synteny	Tan0014308

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTGGTCAGGCTTGAGCATATTGCTCCTCTTTTGAATGCAACCTCCCTACTCACTCATATTGCTGAAGTAGTCGACGTGAAATTCTTGTCAACGATGCTCTCGATAATCGGTCGATCGGAGTCGCAATTCAACCATTCCCCTTGCTTCGTCGCAATGCTGCATTTGCCAAAGCCATTTTTCGCCCGCTATTCGGTCGATCGGAATCACATTTCAAGGATTTCCCTTCACTCCTTTCACAATGCTTTGCTTCATGGCCAAACTTTTTCTTCACTCAGTATCCATATTCTCGAAATCATAGATCGCATGATCCTAAGATTCGAGTCTTCAAGTTAG

mRNA sequence

ATGTTCTTGGTCAGGCTTGAGCATATTGCTCCTCTTTTGAATGCAACCTCCCTACTCACTCATATTGCTGAAGTAGTCGACGTGAAATTCTTGTCAACGATGCTCTCGATAATCGGTCGATCGGAGTCGCAATTCAACCATTCCCCTTGCTTCGTCGCAATGCTGCATTTGCCAAAGCCATTTTTCGCCCGCTATTCGGTCGATCGGAATCACATTTCAAGGATTTCCCTTCACTCCTTTCACAATGCTTTGCTTCATGGCCAAACTTTTTCTTCACTCAGTATCCATATTCTCGAAATCATAGATCGCATGATCCTAAGATTCGAGTCTTCAAGTTAG

Coding sequence (CDS)

ATGTTCTTGGTCAGGCTTGAGCATATTGCTCCTCTTTTGAATGCAACCTCCCTACTCACTCATATTGCTGAAGTAGTCGACGTGAAATTCTTGTCAACGATGCTCTCGATAATCGGTCGATCGGAGTCGCAATTCAACCATTCCCCTTGCTTCGTCGCAATGCTGCATTTGCCAAAGCCATTTTTCGCCCGCTATTCGGTCGATCGGAATCACATTTCAAGGATTTCCCTTCACTCCTTTCACAATGCTTTGCTTCATGGCCAAACTTTTTCTTCACTCAGTATCCATATTCTCGAAATCATAGATCGCATGATCCTAAGATTCGAGTCTTCAAGTTAG

Protein sequence

MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKPFFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFESSS

Homology

[Close]

BLAST of Tan0014308 vs. NCBI nr
Match: XP_008458682.1 (PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 1   MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKP 60
           MFLVRLE   PL++ATSLL  +A+  DVKF   ML II       N SP FVA L L + 
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMII-----VSNRSPQFVATLQLSRR 60

Query: 61  FFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFESSS 113
            F  +SVD N  S++SL  FH+A+L G +FSS++IH+L+  ++M+LRFE+ S
Sbjct: 61  LFTNFSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPS 107

[Close]

BLAST of Tan0014308 vs. NCBI nr
Match: KAG7013723.1 (hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 8.1e-17
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 1   MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKP 60
           MFLV+L+   PLL+ATSLLT I++  DV+F + MLS+I       + SP FVA L +   
Sbjct: 1   MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIAS-----HTSPRFVATLQMSCR 60

Query: 61  FFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFESSS 113
            F  YSVD  + S++SL SFH+A+L G +FSS+SIH+LE   +MILR+E+ S
Sbjct: 61  LFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMILRYENPS 107

[Close]

BLAST of Tan0014308 vs. NCBI nr
Match: KAG7013721.1 (hypothetical protein SDJN02_23888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-16
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 1   MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKP 60
           MFLVRL H  PL+ ATS+L  I+   D+KF S+  S+I    S+      FVA   +   
Sbjct: 1   MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSR-----RFVATFQISHR 60

Query: 61  FFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFESSS 113
           FFA Y VDRNH SR+SL SF+NA+  G  FSS++IH  E   RM+L+FESS+
Sbjct: 61  FFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMVLQFESSN 107

[Close]

BLAST of Tan0014308 vs. NCBI nr
Match: XP_022958857.1 (uncharacterized protein LOC111460011 [Cucurbita moschata])

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-16
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 1   MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKP 60
           MFLVRL H  PL+ ATS+L  I+   D+KF S+  S+I    S       FVA   +   
Sbjct: 1   MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSH-----RFVATFQISHR 60

Query: 61  FFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFESSS 113
           FFA Y VDRNH SR+SL SF+NA+  G  FSS++IH  E   RM+L+FESS+
Sbjct: 61  FFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMVLQFESSN 107

[Close]

BLAST of Tan0014308 vs. NCBI nr
Match: XP_023006010.1 (uncharacterized protein LOC111498887 [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-16
Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 1   MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKP 60
           MFLVRL H  PL  ATSLL  I+   D+KF S+  S+I    S+      FVA   +   
Sbjct: 1   MFLVRLHHFDPLREATSLLAQISNEADLKFSSSKFSLITSYPSR-----RFVATFQISHR 60

Query: 61  FFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFESSS 113
           FFA YSVDRNH SR+SL SF++A+  G  FSS++IH  E   RM+L+FESS+
Sbjct: 61  FFANYSVDRNHSSRVSLQSFYDAMYDGIFFSSMTIHFPETTSRMVLQFESSN 107

[Close]

BLAST of Tan0014308 vs. ExPASy TrEMBL
Match: A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 1   MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKP 60
           MFLVRLE   PL++ATSLL  +A+  DVKF   ML II       N SP FVA L L + 
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMII-----VSNRSPQFVATLQLSRR 60

Query: 61  FFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFESSS 113
            F  +SVD N  S++SL  FH+A+L G +FSS++IH+L+  ++M+LRFE+ S
Sbjct: 61  LFTNFSVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPS 107

[Close]

BLAST of Tan0014308 vs. ExPASy TrEMBL
Match: A0A6J1H2Z8 (uncharacterized protein LOC111460011 OS=Cucurbita moschata OX=3662 GN=LOC111460011 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 1   MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKP 60
           MFLVRL H  PL+ ATS+L  I+   D+KF S+  S+I    S       FVA   +   
Sbjct: 1   MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSH-----RFVATFQISHR 60

Query: 61  FFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFESSS 113
           FFA Y VDRNH SR+SL SF+NA+  G  FSS++IH  E   RM+L+FESS+
Sbjct: 61  FFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMVLQFESSN 107

[Close]

BLAST of Tan0014308 vs. ExPASy TrEMBL
Match: A0A6J1KZ05 (uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 1   MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKP 60
           MFLVRL H  PL  ATSLL  I+   D+KF S+  S+I    S+      FVA   +   
Sbjct: 1   MFLVRLHHFDPLREATSLLAQISNEADLKFSSSKFSLITSYPSR-----RFVATFQISHR 60

Query: 61  FFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFESSS 113
           FFA YSVDRNH SR+SL SF++A+  G  FSS++IH  E   RM+L+FESS+
Sbjct: 61  FFANYSVDRNHSSRVSLQSFYDAMYDGIFFSSMTIHFPETTSRMVLQFESSN 107

[Close]

BLAST of Tan0014308 vs. ExPASy TrEMBL
Match: A0A5D3DZC5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00010 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.7e-16
Identity = 57/112 (50.89%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 1   MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKP 60
           MFLVRL+   PL +ATS L  IA   D+KF     SII       N SP FVA L +   
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIAS-----NRSPRFVAYLQMTHH 62

Query: 61  FFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFESSS 113
            F  Y VD +H SRISL SFH+ALL G    S++IH+L  I ++ILRFESSS
Sbjct: 63  CFINYKVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSS 109

[Close]

BLAST of Tan0014308 vs. ExPASy TrEMBL
Match: A0A1S4E4N8 (uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.7e-16
Identity = 57/112 (50.89%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 1   MFLVRLEHIAPLLNATSLLTHIAEVVDVKFLSTMLSIIGRSESQFNHSPCFVAMLHLPKP 60
           MFLVRL+   PL +ATS L  IA   D+KF     SII       N SP FVA L +   
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIAS-----NRSPRFVAYLQMTHH 62

Query: 61  FFARYSVDRNHISRISLHSFHNALLHGQTFSSLSIHILEIIDRMILRFESSS 113
            F  Y VD +H SRISL SFH+ALL G    S++IH+L  I ++ILRFESSS
Sbjct: 63  CFINYKVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSS 109

The following BLAST results are available for this feature:

BLAST of Tan0014308 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0014308 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458682.1	2.1e-17	50.00	PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]	[more]
KAG7013723.1	8.1e-17	50.00	hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7013721.1	2.4e-16	49.11	hypothetical protein SDJN02_23888, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022958857.1	3.1e-16	49.11	uncharacterized protein LOC111460011 [Cucurbita moschata]	[more]
XP_023006010.1	4.0e-16	50.00	uncharacterized protein LOC111498887 [Cucurbita maxima]	[more]

BLAST of Tan0014308 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C8J1	1.0e-17	50.00	uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=...	[more]
A0A6J1H2Z8	1.5e-16	49.11	uncharacterized protein LOC111460011 OS=Cucurbita moschata OX=3662 GN=LOC1114600...	[more]
A0A6J1KZ05	1.9e-16	50.00	uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887...	[more]
A0A5D3DZC5	5.7e-16	50.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E4N8	5.7e-16	50.89	uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=...	[more]

BLAST of Tan0014308 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..112 e-value: 2.5E-9 score: 38.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014308.1	Tan0014308.1	mRNA