Tan0014250 (gene) Snake gourd v1

Overview


Name	Tan0014250
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	small G protein signaling modulator 1-like isoform X4
Location	LG10: 18486146 .. 18486331 (-)
RNA-Seq Expression	Tan0014250
Synteny	Tan0014250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTGTGGTGGAGAAGCTGATAAGCAATGGACTTGTGCAAAAGCCGGTGCTGCCAGTTTGCAGAAAGTGGGTTTGACTGTGCGAGACATTGGCGAGCCATGCCTTTCACAATTGCCCATAAAGGTTGTTATAGCTGTAAGACTCCCATCAACTATGAGTATGCATGTCACTGAACGCTTTTGA

mRNA sequence

ATGTCTTGTGGTGGAGAAGCTGATAAGCAATGGACTTGTGCAAAAGCCGGTGCTGCCAGTTTGCAGAAAGTGGGTTTGACTGTGCGAGACATTGGCGAGCCATGCCTTTCACAATTGCCCATAAAGGTTGTTATAGCTGTAAGACTCCCATCAACTATGAGTATGCATGTCACTGAACGCTTTTGA

Coding sequence (CDS)

ATGTCTTGTGGTGGAGAAGCTGATAAGCAATGGACTTGTGCAAAAGCCGGTGCTGCCAGTTTGCAGAAAGTGGGTTTGACTGTGCGAGACATTGGCGAGCCATGCCTTTCACAATTGCCCATAAAGGTTGTTATAGCTGTAAGACTCCCATCAACTATGAGTATGCATGTCACTGAACGCTTTTGA

Protein sequence

MSCGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAVRLPSTMSMHVTERF

Homology

[Close]

BLAST of Tan0014250 vs. NCBI nr
Match: XP_023540587.1 (small G protein signaling modulator 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540588.1 small G protein signaling modulator 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          MSCGGEADKQWTCAKAGAASLQK+GL VRDIGEPCL Q PIKVVIAV
Sbjct: 1  MSCGGEADKQWTCAKAGAASLQKMGLIVRDIGEPCLPQSPIKVVIAV 47

[Close]

BLAST of Tan0014250 vs. NCBI nr
Match: KAG6597686.1 (TBC1 domain family member 15, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          MSCGGEADKQWTCAKAGAASLQK+GL VRDIGEPCL Q PIKVVIAV
Sbjct: 1  MSCGGEADKQWTCAKAGAASLQKMGLIVRDIGEPCLPQSPIKVVIAV 47

[Close]

BLAST of Tan0014250 vs. NCBI nr
Match: XP_023540590.1 (small G protein signaling modulator 1-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          MSCGGEADKQWTCAKAGAASLQK+GL VRDIGEPCL Q PIKVVIAV
Sbjct: 1  MSCGGEADKQWTCAKAGAASLQKMGLIVRDIGEPCLPQSPIKVVIAV 47

[Close]

BLAST of Tan0014250 vs. NCBI nr
Match: XP_022932685.1 (small G protein signaling modulator 1-like isoform X1 [Cucurbita moschata] >XP_022932686.1 small G protein signaling modulator 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          MSCGGEADKQWTCAKAGAASLQK+GL VRDIGEPCL Q PIKVVIAV
Sbjct: 1  MSCGGEADKQWTCAKAGAASLQKMGLIVRDIGEPCLPQSPIKVVIAV 47

[Close]

BLAST of Tan0014250 vs. NCBI nr
Match: XP_022932690.1 (small G protein signaling modulator 1-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          MSCGGEADKQWTCAKAGAASLQK+GL VRDIGEPCL Q PIKVVIAV
Sbjct: 1  MSCGGEADKQWTCAKAGAASLQKMGLIVRDIGEPCLPQSPIKVVIAV 47

[Close]

BLAST of Tan0014250 vs. ExPASy TrEMBL
Match: A0A6J1F2U5 (small G protein signaling modulator 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439159 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.6e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          MSCGGEADKQWTCAKAGAASLQK+GL VRDIGEPCL Q PIKVVIAV
Sbjct: 1  MSCGGEADKQWTCAKAGAASLQKMGLIVRDIGEPCLPQSPIKVVIAV 47

[Close]

BLAST of Tan0014250 vs. ExPASy TrEMBL
Match: A0A6J1EXQ4 (small G protein signaling modulator 1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111439159 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.6e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          MSCGGEADKQWTCAKAGAASLQK+GL VRDIGEPCL Q PIKVVIAV
Sbjct: 1  MSCGGEADKQWTCAKAGAASLQKMGLIVRDIGEPCLPQSPIKVVIAV 47

[Close]

BLAST of Tan0014250 vs. ExPASy TrEMBL
Match: A0A6J1F2U9 (small G protein signaling modulator 1-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111439159 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.6e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          MSCGGEADKQWTCAKAGAASLQK+GL VRDIGEPCL Q PIKVVIAV
Sbjct: 1  MSCGGEADKQWTCAKAGAASLQKMGLIVRDIGEPCLPQSPIKVVIAV 47

[Close]

BLAST of Tan0014250 vs. ExPASy TrEMBL
Match: A0A6J1IAE1 (small G protein signaling modulator 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470707 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-14
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          MSCGGEADKQWTCAKAGAAS QKVGL VRDIGEPCL Q PIKVVIAV
Sbjct: 1  MSCGGEADKQWTCAKAGAASWQKVGLIVRDIGEPCLPQSPIKVVIAV 47

[Close]

BLAST of Tan0014250 vs. ExPASy TrEMBL
Match: A0A1S3BXB1 (small G protein signaling modulator 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494612 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-14
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          MSCGGEA KQWTCAKAGAASLQKVGL VRDIGEPCLSQ PIKVVI V
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITV 47

[Close]

BLAST of Tan0014250 vs. TAIR 10
Match: AT2G43490.1 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 5.6e-10
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 3  CGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          C G   KQW+C KAG  SLQKVG  VRD+ EPCLSQ  I+VVI +
Sbjct: 2  CSGGEGKQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITI 46

[Close]

BLAST of Tan0014250 vs. TAIR 10
Match: AT2G43490.2 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 5.6e-10
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 3  CGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          C G   KQW+C KAG  SLQKVG  VRD+ EPCLSQ  I+VVI +
Sbjct: 2  CSGGEGKQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITI 46

[Close]

BLAST of Tan0014250 vs. TAIR 10
Match: AT2G43490.3 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 5.6e-10
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 3  CGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          C G   KQW+C KAG  SLQKVG  VRD+ EPCLSQ  I+VVI +
Sbjct: 2  CSGGEGKQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITI 46

[Close]

BLAST of Tan0014250 vs. TAIR 10
Match: AT2G43490.4 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 5.6e-10
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 3  CGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          C G   KQW+C KAG  SLQKVG  VRD+ EPCLSQ  I+VVI +
Sbjct: 2  CSGGEGKQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITI 46

[Close]

BLAST of Tan0014250 vs. TAIR 10
Match: AT2G43490.5 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 5.6e-10
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 3  CGGEADKQWTCAKAGAASLQKVGLTVRDIGEPCLSQLPIKVVIAV 48
          C G   KQW+C KAG  SLQKVG  VRD+ EPCLSQ  I+VVI +
Sbjct: 2  CSGGEGKQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITI 46

The following BLAST results are available for this feature:

BLAST of Tan0014250 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0014250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540587.1	1.6e-14	91.49	small G protein signaling modulator 1-like isoform X1 [Cucurbita pepo subsp. pep...	[more]
KAG6597686.1	1.6e-14	91.49	TBC1 domain family member 15, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023540590.1	1.6e-14	91.49	small G protein signaling modulator 1-like isoform X3 [Cucurbita pepo subsp. pep...	[more]
XP_022932685.1	1.6e-14	91.49	small G protein signaling modulator 1-like isoform X1 [Cucurbita moschata] >XP_0...	[more]
XP_022932690.1	1.6e-14	91.49	small G protein signaling modulator 1-like isoform X4 [Cucurbita moschata]	[more]

BLAST of Tan0014250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F2U5	7.6e-15	91.49	small G protein signaling modulator 1-like isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1EXQ4	7.6e-15	91.49	small G protein signaling modulator 1-like isoform X3 OS=Cucurbita moschata OX=3...	[more]
A0A6J1F2U9	7.6e-15	91.49	small G protein signaling modulator 1-like isoform X4 OS=Cucurbita moschata OX=3...	[more]
A0A6J1IAE1	1.7e-14	91.49	small G protein signaling modulator 1-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A1S3BXB1	1.7e-14	91.49	small G protein signaling modulator 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Tan0014250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43490.1	5.6e-10	62.22	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT2G43490.2	5.6e-10	62.22	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT2G43490.3	5.6e-10	62.22	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT2G43490.4	5.6e-10	62.22	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT2G43490.5	5.6e-10	62.22	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014250.1	Tan0014250.1	mRNA