Tan0014239 (gene) Snake gourd v1

Overview


Name	Tan0014239
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	myrosinase-binding protein 2-like
Location	LG01: 115294682 .. 115295133 (-)
RNA-Seq Expression	Tan0014239
Synteny	Tan0014239

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCTAGAACTTACGTTTTGATATTCTTCTTCTGGGCCATCCTCACAGTCATTACCCCCACTCTAATTTTCCTTTCACAGAATTCCAAACTTGCCTTTGCTAGTCAACTTCGTTGTCTAATGATATTGAATTGATTTTCTTTTTTGGTTCTGCCTTTGGTTTCAAAAATGATTATTCAGCACTTTTTGTTCATGTTAATTACATTTTGGCAGGTGAGAAAAGTGAGGAAATTAAGACCAGAAAAATGATGGGTCACTCGGAAGAAGATTCCATGAGAACACTTATGGCTTTGGTTCAAATGCAGGCAGTGGCCGCTCCGGCGCCGGCTCCGGCATTAATGGAAAGCTCTGTCGTTGGGATTCATGAAAAGAGAAGAGGGCAACAAGATTTCATTAGTAAGCAAGACGATATTATGTACGGAAGAGATAGTGGCACAAATGCTTTTTGA

mRNA sequence

ATGACTGCTAGAACTTACGTTTTGATATTCTTCTTCTGGGCCATCCTCACAGTCATTACCCCCACTCTAATTTTCCTTTCACAGAATTCCAAACTTGCCTTTGCTAGTCAACTTCGTGAGAAAAGTGAGGAAATTAAGACCAGAAAAATGATGGGTCACTCGGAAGAAGATTCCATGAGAACACTTATGGCTTTGGTTCAAATGCAGGCAGTGGCCGCTCCGGCGCCGGCTCCGGCATTAATGGAAAGCTCTGTCGTTGGGATTCATGAAAAGAGAAGAGGGCAACAAGATTTCATTAGTAAGCAAGACGATATTATGTACGGAAGAGATAGTGGCACAAATGCTTTTTGA

Coding sequence (CDS)

ATGACTGCTAGAACTTACGTTTTGATATTCTTCTTCTGGGCCATCCTCACAGTCATTACCCCCACTCTAATTTTCCTTTCACAGAATTCCAAACTTGCCTTTGCTAGTCAACTTCGTGAGAAAAGTGAGGAAATTAAGACCAGAAAAATGATGGGTCACTCGGAAGAAGATTCCATGAGAACACTTATGGCTTTGGTTCAAATGCAGGCAGTGGCCGCTCCGGCGCCGGCTCCGGCATTAATGGAAAGCTCTGTCGTTGGGATTCATGAAAAGAGAAGAGGGCAACAAGATTTCATTAGTAAGCAAGACGATATTATGTACGGAAGAGATAGTGGCACAAATGCTTTTTGA

Protein sequence

MTARTYVLIFFFWAILTVITPTLIFLSQNSKLAFASQLREKSEEIKTRKMMGHSEEDSMRTLMALVQMQAVAAPAPAPALMESSVVGIHEKRRGQQDFISKQDDIMYGRDSGTNAF

Homology

[Close]

BLAST of Tan0014239 vs. NCBI nr
Match: XP_022135153.1 (uncharacterized protein LOC111004493 isoform X1 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-23
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 1   MTARTYVLIFFFWAILTVITPTLIFLSQNSKLAFASQLREKSEEIKTRKMMGHSEEDSMR 60
           MTARTYVLIFFFWAILTVITPTLIFLS+NS+LA A    +KS +IKTRKMMG S EDSM+
Sbjct: 39  MTARTYVLIFFFWAILTVITPTLIFLSENSRLASADSTGQKSAKIKTRKMMGRSVEDSMQ 98

Query: 61  TLMALVQMQAVA-----APAPAPALMESSVVGIHEKRRGQQDFISKQDDIMY 108
           TLMALV+MQAVA     APAPAP L  S  V + EK   +Q++ SKQ D+MY
Sbjct: 99  TLMALVKMQAVATVAAQAPAPAPTLEIS--VEVPEKGGEKQNYNSKQ-DVMY 147

[Close]

BLAST of Tan0014239 vs. NCBI nr
Match: XP_022142779.1 (uncharacterized protein LOC111004493 isoform X2 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 49/85 (57.65%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 28  QNSKLAFASQLREKSEEIKTRKMMGHSEEDSMRTLMALVQMQAVA-----APAPAPALME 87
           +NS+LA A    +KS +IKTRKMMG S EDSM+TLMALV+MQAVA     APAPAP L  
Sbjct: 48  ENSRLASADSTGQKSAKIKTRKMMGRSVEDSMQTLMALVKMQAVATVAAQAPAPAPTLEI 107

Query: 88  SSVVGIHEKRRGQQDFISKQDDIMY 108
           S  V + EK   +Q++ SKQ D+MY
Sbjct: 108 S--VEVPEKGGEKQNYNSKQ-DVMY 129

[Close]

BLAST of Tan0014239 vs. NCBI nr
Match: PON40894.1 (Transmembrane protein [Parasponia andersonii])

HSP 1 Score: 67.4 bits (163), Expect = 9.3e-08
Identity = 42/80 (52.50%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MTARTYVLIFFFWAILTVITPTLIFLSQNSKLAFASQLREKSEEIKTRKMMGHSEEDSMR 60
          M+ RT+V+IFFFWA+LT+ITPTL+ LS++SK    ++  EKSEEIK R++M  +E+ S+R
Sbjct: 1  MSGRTFVVIFFFWALLTIITPTLVHLSESSKSQHLNE--EKSEEIKVRRIM--AEKHSIR 60

Query: 61 TLMALVQMQAVAAPAPAPAL 81
          T  +L  + A  APAPAP++
Sbjct: 61 TPTSLANLPA-PAPAPAPSV 75

[Close]

BLAST of Tan0014239 vs. NCBI nr
Match: PON93428.1 (hypothetical protein TorRG33x02_107060 [Trema orientale])

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-07
Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1  MTARTYVLIFFFWAILTVITPTLIFLSQNSKLAFASQLREKSEEIKTRKMMGHSEEDSMR 60
          M+ RT+V+IFFFWA+LT+ITPTL+ LS++SK    ++  EKSEEIK R++M  +E+ S+R
Sbjct: 1  MSGRTFVVIFFFWALLTIITPTLVHLSESSKSQHLNE--EKSEEIKVRRIM--AEKHSIR 60

Query: 61 TLMALVQMQAVAAPAPAPAL 81
          T  +L    A  APAPAP++
Sbjct: 61 TPTSLANSPA-PAPAPAPSV 75

[Close]

BLAST of Tan0014239 vs. NCBI nr
Match: XP_030950546.1 (uncharacterized protein LOC115974360 [Quercus lobata])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 4  RTYVLIFFFWAILTVITPTLIFLSQNSKLAFASQLREKSEEIKTRKMMGHSEEDSMRTLM 63
          RT+VLIFFFWA+LT+ITPTLI LS+NSK        +K E IK RKMM + E+ S +  +
Sbjct: 3  RTFVLIFFFWAVLTIITPTLIILSENSKPKLDLN-GQKDEVIKVRKMMLYIEKYSTKIPI 62

Query: 64 ALVQMQAVA-APAPAPA 80
          AL   +A A APAPAPA
Sbjct: 63 ALAPKEAPAPAPAPAPA 78

[Close]

BLAST of Tan0014239 vs. ExPASy TrEMBL
Match: A0A6J1C406 (uncharacterized protein LOC111004493 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004493 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.0e-23
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 1   MTARTYVLIFFFWAILTVITPTLIFLSQNSKLAFASQLREKSEEIKTRKMMGHSEEDSMR 60
           MTARTYVLIFFFWAILTVITPTLIFLS+NS+LA A    +KS +IKTRKMMG S EDSM+
Sbjct: 39  MTARTYVLIFFFWAILTVITPTLIFLSENSRLASADSTGQKSAKIKTRKMMGRSVEDSMQ 98

Query: 61  TLMALVQMQAVA-----APAPAPALMESSVVGIHEKRRGQQDFISKQDDIMY 108
           TLMALV+MQAVA     APAPAP L  S  V + EK   +Q++ SKQ D+MY
Sbjct: 99  TLMALVKMQAVATVAAQAPAPAPTLEIS--VEVPEKGGEKQNYNSKQ-DVMY 147

[Close]

BLAST of Tan0014239 vs. ExPASy TrEMBL
Match: A0A6J1CMG7 (uncharacterized protein LOC111004493 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111004493 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 49/85 (57.65%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 28  QNSKLAFASQLREKSEEIKTRKMMGHSEEDSMRTLMALVQMQAVA-----APAPAPALME 87
           +NS+LA A    +KS +IKTRKMMG S EDSM+TLMALV+MQAVA     APAPAP L  
Sbjct: 48  ENSRLASADSTGQKSAKIKTRKMMGRSVEDSMQTLMALVKMQAVATVAAQAPAPAPTLEI 107

Query: 88  SSVVGIHEKRRGQQDFISKQDDIMY 108
           S  V + EK   +Q++ SKQ D+MY
Sbjct: 108 S--VEVPEKGGEKQNYNSKQ-DVMY 129

[Close]

BLAST of Tan0014239 vs. ExPASy TrEMBL
Match: A0A2P5AWF4 (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294100 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.5e-08
Identity = 42/80 (52.50%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MTARTYVLIFFFWAILTVITPTLIFLSQNSKLAFASQLREKSEEIKTRKMMGHSEEDSMR 60
          M+ RT+V+IFFFWA+LT+ITPTL+ LS++SK    ++  EKSEEIK R++M  +E+ S+R
Sbjct: 1  MSGRTFVVIFFFWALLTIITPTLVHLSESSKSQHLNE--EKSEEIKVRRIM--AEKHSIR 60

Query: 61 TLMALVQMQAVAAPAPAPAL 81
          T  +L  + A  APAPAP++
Sbjct: 61 TPTSLANLPA-PAPAPAPSV 75

[Close]

BLAST of Tan0014239 vs. ExPASy TrEMBL
Match: A0A2P5F6K0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_107060 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-07
Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1  MTARTYVLIFFFWAILTVITPTLIFLSQNSKLAFASQLREKSEEIKTRKMMGHSEEDSMR 60
          M+ RT+V+IFFFWA+LT+ITPTL+ LS++SK    ++  EKSEEIK R++M  +E+ S+R
Sbjct: 1  MSGRTFVVIFFFWALLTIITPTLVHLSESSKSQHLNE--EKSEEIKVRRIM--AEKHSIR 60

Query: 61 TLMALVQMQAVAAPAPAPAL 81
          T  +L    A  APAPAP++
Sbjct: 61 TPTSLANSPA-PAPAPAPSV 75

[Close]

BLAST of Tan0014239 vs. ExPASy TrEMBL
Match: A0A7N2KSG0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 4  RTYVLIFFFWAILTVITPTLIFLSQNSKLAFASQLREKSEEIKTRKMMGHSEEDSMRTLM 63
          RT+VLIFFFWA+LT+ITPTLI LS+NSK        +K E IK RKMM + E+ S +  +
Sbjct: 3  RTFVLIFFFWAVLTIITPTLIILSENSKPKLDLN-GQKDEVIKVRKMMLYIEKYSTKIPI 62

Query: 64 ALVQMQAVA-APAPAPA 80
          AL   +A A APAPAPA
Sbjct: 63 ALAPKEAPAPAPAPAPA 78

[Close]

BLAST of Tan0014239 vs. TAIR 10
Match: AT5G42785.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-05
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 1  MTARTYVLIFFFWAILTVITPTLIFLSQNSK--LAFASQLREKSEEIKTRKMMGHSEE 57
          M  R YV+IFFFWA+LT+ITP L+  SQ+ K     ++   +K ++   R+MMG+SEE
Sbjct: 1  MKGRAYVMIFFFWALLTIITPMLVSWSQSLKNLPPLSNDQEQKIKDSGPRRMMGYSEE 58

The following BLAST results are available for this feature:

BLAST of Tan0014239 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0014239 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135153.1	2.1e-23	67.86	uncharacterized protein LOC111004493 isoform X1 [Momordica charantia]	[more]
XP_022142779.1	2.9e-09	57.65	uncharacterized protein LOC111004493 isoform X2 [Momordica charantia]	[more]
PON40894.1	9.3e-08	52.50	Transmembrane protein [Parasponia andersonii]	[more]
PON93428.1	2.1e-07	52.50	hypothetical protein TorRG33x02_107060 [Trema orientale]	[more]
XP_030950546.1	2.7e-07	57.14	uncharacterized protein LOC115974360 [Quercus lobata]	[more]

BLAST of Tan0014239 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C406	1.0e-23	67.86	uncharacterized protein LOC111004493 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CMG7	1.4e-09	57.65	uncharacterized protein LOC111004493 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A2P5AWF4	4.5e-08	52.50	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294100 PE=4...	[more]
A0A2P5F6K0	1.0e-07	52.50	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_107060 PE=4 SV...	[more]
A0A7N2KSG0	1.3e-07	57.14	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Tan0014239 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42785.1	1.2e-05	46.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38396	TRANSMEMBRANE PROTEIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014239.1	Tan0014239.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane