Tan0014219 (gene) Snake gourd v1

Overview
NameTan0014219
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionEquilibrative nucleoside transporter 2-like
LocationLG02: 2283449 .. 2283688 (-)
RNA-Seq ExpressionTan0014219
SyntenyTan0014219
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCAGAAACTCATGGTGAGGAACAATTTACAAACTATAGTACTTCTTCCACCATGAAACCTTTCTCAGATTATCCCACTCGTACTTCTAGCAACTTTTCTTCTTCTTCAAAGCAGGCCTCCAAATATTCCGGCAATGGCTCCGGCACCGTCGGCGGCGAAAGGGACAAGTTCAAAAAGGCCGAAGAGTCGCTTCGGACCGTCATGTATTTGAGTTGTTGGGGTCCTAATTCATGA

mRNA sequence

ATGGCTGCAGAAACTCATGGTGAGGAACAATTTACAAACTATAGTACTTCTTCCACCATGAAACCTTTCTCAGATTATCCCACTCGTACTTCTAGCAACTTTTCTTCTTCTTCAAAGCAGGCCTCCAAATATTCCGGCAATGGCTCCGGCACCGTCGGCGGCGAAAGGGACAAGTTCAAAAAGGCCGAAGAGTCGCTTCGGACCGTCATGTATTTGAGTTGTTGGGGTCCTAATTCATGA

Coding sequence (CDS)

ATGGCTGCAGAAACTCATGGTGAGGAACAATTTACAAACTATAGTACTTCTTCCACCATGAAACCTTTCTCAGATTATCCCACTCGTACTTCTAGCAACTTTTCTTCTTCTTCAAAGCAGGCCTCCAAATATTCCGGCAATGGCTCCGGCACCGTCGGCGGCGAAAGGGACAAGTTCAAAAAGGCCGAAGAGTCGCTTCGGACCGTCATGTATTTGAGTTGTTGGGGTCCTAATTCATGA

Protein sequence

MAAETHGEEQFTNYSTSSTMKPFSDYPTRTSSNFSSSSKQASKYSGNGSGTVGGERDKFKKAEESLRTVMYLSCWGPNS
Homology
BLAST of Tan0014219 vs. NCBI nr
Match: KAG6572336.1 (hypothetical protein SDJN03_29064, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 4.7e-11
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = 0

Query: 1  MAAETHGEEQFTNYSTSSTMKPFSDYPTRTSSNFSS--SSKQASKYSGNGSGT------- 60
          MAAET GE+++TNYS        SD+ T +S+ FSS  SSKQA  +S +GSG+       
Sbjct: 2  MAAET-GEKRYTNYS--------SDHSTSSSAKFSSSASSKQAITFSRDGSGSGSGSGSG 61

Query: 61 --VGGERDKFKKAEESLRTVMYLSCWGPNS 80
             GGERD+ +KAEESLRTVMYLSCWGPNS
Sbjct: 62 AKHGGERDRLRKAEESLRTVMYLSCWGPNS 82

BLAST of Tan0014219 vs. NCBI nr
Match: KGN43575.1 (hypothetical protein Csa_020190 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-10
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 7  GEEQ--FTNYSTSSTMKP-FSDYPTRTSS-NFSSSSKQASKYSGNGSGTVGGERDKFKKA 66
          GE+Q   TN++++S++K  FS YP  TSS + SSSSK  +K+S NGS    GE+DK KKA
Sbjct: 3  GEQQQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGS-VSQGEKDKIKKA 62

Query: 67 EESLRTVMYLSCWGPNS 80
          EESLRTVMYLSCWGPNS
Sbjct: 63 EESLRTVMYLSCWGPNS 78

BLAST of Tan0014219 vs. NCBI nr
Match: GFQ07776.1 (hypothetical protein PHJA_002921600 [Phtheirospermum japonicum])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 34 FSSSSKQASKYSGNGSGTVGGERDKFKKAEESLRTVMYLSCWGPN 79
          + SS++QA KY+G    TV  + DK K AEESLRTVMYLSCWGPN
Sbjct: 38 YGSSARQARKYTGAIESTVHDKADKMKHAEESLRTVMYLSCWGPN 82

BLAST of Tan0014219 vs. NCBI nr
Match: KAG5233467.1 (hypothetical protein IMY05_013G0122700 [Salix suchowensis] >KAG5233480.1 hypothetical protein IMY05_013G0124000 [Salix suchowensis])

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-05
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 0

Query: 17 SSTMKPFSDYPTRTSSNFSSSSKQASKYSGNGS------GTVGGERDKFKKAEESLRTVM 76
          S  M+  +D   RT    +SSSKQ + +SGN S           E +K K+AEESLRTVM
Sbjct: 2  SERMQSVTDKAPRTGLREASSSKQMTSFSGNFSFNDADKSGKNSEENKIKQAEESLRTVM 61

Query: 77 YLSCWGPNS 80
          YLSCWGPNS
Sbjct: 62 YLSCWGPNS 70

BLAST of Tan0014219 vs. NCBI nr
Match: KAG6776957.1 (hypothetical protein POTOM_016750 [Populus tomentosa])

HSP 1 Score: 57.0 bits (136), Expect = 8.5e-05
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 36 SSSKQASKYSG--NGSGTVGGERDKFKKAEESLRTVMYLSCWGPN 79
          SSSKQA ++SG  + S  +  + +KFK+AEESLRTVM+LSCWGPN
Sbjct: 43 SSSKQARRFSGSVDSSAYMNAKNEKFKQAEESLRTVMFLSCWGPN 87

BLAST of Tan0014219 vs. ExPASy TrEMBL
Match: A0A0A0K1Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046140 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 7  GEEQ--FTNYSTSSTMKP-FSDYPTRTSS-NFSSSSKQASKYSGNGSGTVGGERDKFKKA 66
          GE+Q   TN++++S++K  FS YP  TSS + SSSSK  +K+S NGS    GE+DK KKA
Sbjct: 3  GEQQQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGS-VSQGEKDKIKKA 62

Query: 67 EESLRTVMYLSCWGPNS 80
          EESLRTVMYLSCWGPNS
Sbjct: 63 EESLRTVMYLSCWGPNS 78

BLAST of Tan0014219 vs. ExPASy TrEMBL
Match: A0A6N2KXE2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS151145 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.4e-05
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 35 SSSSKQASKYSGNGSGTVGGE--RDKFKKAEESLRTVMYLSCWGPN 79
          SSSSKQA ++SG+   +V  E   +KFK+AEESLRTVM+LSCWGPN
Sbjct: 42 SSSSKQARRFSGSVDSSVFMEARSEKFKQAEESLRTVMFLSCWGPN 87

BLAST of Tan0014219 vs. ExPASy TrEMBL
Match: A0A6A3C4W6 (Equilibrative nucleoside transporter 2-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00010533pilonHSYRG00039 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.1e-05
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 31 SSNFSSSSKQASKYSGNGSGTVG--GERDKFKKAEESLRTVMYLSCWGPN 79
          SS+ SSSSKQAS +       V    E DK K+AEESLRTVMYLSCWGPN
Sbjct: 21 SSSSSSSSKQASSFCNTIKSGVSKTAENDKLKQAEESLRTVMYLSCWGPN 70

BLAST of Tan0014219 vs. ExPASy TrEMBL
Match: A0A1U8MHB3 (uncharacterized protein LOC107937748 OS=Gossypium hirsutum OX=3635 GN=LOC107937748 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.1e-05
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 19 TMKPFSDYPTRTSSNFSSSSKQASKYSGN-GSGTV---GGERDKFKKAEESLRTVMYLSC 78
          ++K  S   + +SS+ SSSSKQA ++S    SGTV       ++ K+AEESLRTVM+LSC
Sbjct: 34 SLKDSSSSSSSSSSSSSSSSKQARRFSNTVDSGTVKAAAATNERLKQAEESLRTVMFLSC 93

Query: 79 WGPNS 80
          WGPNS
Sbjct: 94 WGPNS 98

BLAST of Tan0014219 vs. ExPASy TrEMBL
Match: A0A1J3HEL0 (Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=LE_TR1030_c0_g1_i1_g.2764 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.1e-05
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 29 RTSSNFSSSSKQASKYSGNGSGTVGGERDKFKKAEESLRTVMYLSCWGPN 79
          R  +N  S+S QA+++S + +    G  +K K+AEESLRTVMYLSCWGPN
Sbjct: 39 RIRNNVRSASHQANRFSSSSTDVASGNVEKAKQAEESLRTVMYLSCWGPN 88

BLAST of Tan0014219 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.8e-08
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 36 SSSKQASKYSGNGSGTVGGERDKFKKAEESLRTVMYLSCWGPN 79
          S  K+ S  S + + T  GE +K KKAEESLRTVMYLSCWGPN
Sbjct: 48 SQGKRFSSSSVSAAVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6572336.14.7e-1156.67hypothetical protein SDJN03_29064, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN43575.13.0e-1062.34hypothetical protein Csa_020190 [Cucumis sativus][more]
GFQ07776.11.0e-0564.44hypothetical protein PHJA_002921600 [Phtheirospermum japonicum][more]
KAG5233467.16.5e-0550.72hypothetical protein IMY05_013G0122700 [Salix suchowensis] >KAG5233480.1 hypothe... [more]
KAG6776957.18.5e-0562.22hypothetical protein POTOM_016750 [Populus tomentosa][more]
Match NameE-valueIdentityDescription
A0A0A0K1Q21.5e-1062.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046140 PE=4 SV=1[more]
A0A6N2KXE25.4e-0565.22Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS151145 PE=4 SV=... [more]
A0A6A3C4W67.1e-0564.00Equilibrative nucleoside transporter 2-like OS=Hibiscus syriacus OX=106335 GN=F3... [more]
A0A1U8MHB37.1e-0552.31uncharacterized protein LOC107937748 OS=Gossypium hirsutum OX=3635 GN=LOC1079377... [more]
A0A1J3HEL07.1e-0554.00Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=LE_TR1030_c0_g1_i1_... [more]
Match NameE-valueIdentityDescription
AT4G10270.18.8e-0862.79Wound-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 31..77
e-value: 4.3E-12
score: 46.9
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090DUF3774 DOMAIN PROTEIN-RELATEDcoord: 14..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..49
NoneNo IPR availablePANTHERPTHR33090:SF27SUBFAMILY NOT NAMEDcoord: 14..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0014219.1Tan0014219.1mRNA