Tan0014212 (gene) Snake gourd v1

Overview


Name	Tan0014212
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Mixed-linked glucan synthase
Location	LG01: 112677275 .. 112678457 (-)
RNA-Seq Expression	Tan0014212
Synteny	Tan0014212

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCAACCTACTGGAAATTTCTGTTATTTTGACTGATATTATTATTCATGCTTCCATCATAGTTTATAGAATTATGGAGAGAGAGAGAGAGAGAGGGAGAAATGAGCAAAAGCTGAAGTGAGAAGGAAGGATAATAGGGCAGCTGCCAGCTATGAGCGGCGGCAAATACACTCATGCAGGCCCCATAGGACCATTTGGGGTATGGCATAATCTTACAAGTTGCTTTCATATTTGCTTTTGTTTTTATTTTACCTGGCCCCTAATTTTGAATCTGTCTTTGTAATTGTATGTAGATGGAATTTATTAACAAGCCCCAAATCATGATTGGCTCTTTGCACGCTTTGTTAGCAACTTTTGTTTTGTTTTTTATTTCTCTGTTATAAAGATCTTTGTTTTGAGATTAACTTCCACTACCTTGTCGGTAATTTTAACAGTGTTATGCTTTAAAATTCAACCCTTAATTATTAACACAGGATCGGTAGAAGATGCTCCTTTGGAACTTATAAGCTGCTAGCTTGGAGCTTTCATAACTCTGTCTCTGTCTCTGTCTTTGTCTCTGTTTCTGTTTTTTCTCTCTCTGTTTCTGATTCAGGTTCAAACAGAGCTTCAAATTCCATTTCCATGGCTGCCATTACTTCCACCTGCTGTAGCTTCTTCTCCATCAGATCAAATTCTATGGAACCAAGAGTGAGAACTTCTTCACCAAGCCATGGCTCTCCATCATGTGGGAAGCTTGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCATTGGAACGATGCTCTTGTATTCGTATTGCCACGGCCGAGGATGATGGCGATGAGGCGAACGATGCCCCTTTGATCCCGAACGATGGTAACCTTCGACAGGACGGCGGTGCTGCTGGCCGGAGGAGGGCCGGGAAAGGCAAGAAGTGTCAGCCACTTGTAGATGCAATCTAATGAGCTCTGCTACTTATCTTGTATAATTCCAATCAAAAAGCTCCTCTTTTTCTTTGGTAAGTGATATAAAGGAGCTTCTGAATCTGAGAAATTTACTGCTTTTAGAATCTAAATTAAAATACTGGAATAAGTTTCAGTATCTCTGCGTCTGAACTGCTTCAATTTAATCTCAATCTCAACCAATTACTTCAATAACAGCTCAAATTTTGATCTTCTCATTAA

mRNA sequence

CTTCCAACCTACTGGAAATTTCTGTTATTTTGACTGATATTATTATTCATGCTTCCATCATAGTTTATAGAATTATGGAGAGAGAGAGAGAGAGAGGGAGAAATGAGCAAAAGCTGAAGTGAGAAGGAAGGATAATAGGGCAGCTGCCAGCTATGAGCGGCGGCAAATACACTCATGCAGGCCCCATAGGACCATTTGGGGTATGGCATAATCTTACAAGTTGCTTTCATATTTGCTTTTGTTTTTATTTTACCTGGCCCCTAATTTTGAATCTGTCTTTGTAATTGTATGTAGATGGAATTTATTAACAAGCCCCAAATCATGATTGGCTCTTTGCACGCTTTGTTAGCAACTTTTGTTTTGTTTTTTATTTCTCTGTTATAAAGATCTTTGTTTTGAGATTAACTTCCACTACCTTGTCGGTAATTTTAACAGTGTTATGCTTTAAAATTCAACCCTTAATTATTAACACAGGATCGGTAGAAGATGCTCCTTTGGAACTTATAAGCTGCTAGCTTGGAGCTTTCATAACTCTGTCTCTGTCTCTGTCTTTGTCTCTGTTTCTGTTTTTTCTCTCTCTGTTTCTGATTCAGGTTCAAACAGAGCTTCAAATTCCATTTCCATGGCTGCCATTACTTCCACCTGCTGTAGCTTCTTCTCCATCAGATCAAATTCTATGGAACCAAGAGTGAGAACTTCTTCACCAAGCCATGGCTCTCCATCATGTGGGAAGCTTGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCATTGGAACGATGCTCTTGTATTCGTATTGCCACGGCCGAGGATGATGGCGATGAGGCGAACGATGCCCCTTTGATCCCGAACGATGGTAACCTTCGACAGGACGGCGGTGCTGCTGGCCGGAGGAGGGCCGGGAAAGGCAAGAAGTGTCAGCCACTTGTAGATGCAATCTAATGAGCTCTGCTACTTATCTTGTATAATTCCAATCAAAAAGCTCCTCTTTTTCTTTGGTAAGTGATATAAAGGAGCTTCTGAATCTGAGAAATTTACTGCTTTTAGAATCTAAATTAAAATACTGGAATAAGTTTCAGTATCTCTGCGTCTGAACTGCTTCAATTTAATCTCAATCTCAACCAATTACTTCAATAACAGCTCAAATTTTGATCTTCTCATTAA

Coding sequence (CDS)

ATGGCTGCCATTACTTCCACCTGCTGTAGCTTCTTCTCCATCAGATCAAATTCTATGGAACCAAGAGTGAGAACTTCTTCACCAAGCCATGGCTCTCCATCATGTGGGAAGCTTGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCATTGGAACGATGCTCTTGTATTCGTATTGCCACGGCCGAGGATGATGGCGATGAGGCGAACGATGCCCCTTTGATCCCGAACGATGGTAACCTTCGACAGGACGGCGGTGCTGCTGGCCGGAGGAGGGCCGGGAAAGGCAAGAAGTGTCAGCCACTTGTAGATGCAATCTAA

Protein sequence

MAAITSTCCSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEANDAPLIPNDGNLRQDGGAAGRRRAGKGKKCQPLVDAI

Homology

[Close]

BLAST of Tan0014212 vs. NCBI nr
Match: XP_022977101.1 (uncharacterized protein LOC111477268 [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MAAITSTCCSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTC SFFSIRS+SMEPRVRTSSPSH SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 91  MAAITSTCSSFFSIRSSSMEPRVRTSSPSHASPACGKLDGVATWLINGFVTAFFGSLERC 150

Query: 61  SCIRIATAEDDGDEANDAPLIPNDGNLRQDGGAAGRRRAGKGKKCQPLVDAI 113
           SCIRIATAEDDGDEANDAPLIPNDGNL+QDG AAGRRR  KGKKCQPLVDAI
Sbjct: 151 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 202

[Close]

BLAST of Tan0014212 vs. NCBI nr
Match: KAG6591437.1 (hypothetical protein SDJN03_13783, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MAAITSTCCSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTC SFFSIRS+SMEPRVRTSSP+H SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 63  MAAITSTCSSFFSIRSSSMEPRVRTSSPTHASPACGKLDGVATWLINGFVTAFFGSLERC 122

Query: 61  SCIRIATAEDDGDEANDAPLIPNDGNLRQDGGAAGRRRAGKGKKCQPLVDAI 113
           SCIRIATAEDDGDEANDAPLIPNDGNL+QDG AAGRRR  KGKKCQPLVDAI
Sbjct: 123 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGTAAGRRRTVKGKKCQPLVDAI 174

[Close]

BLAST of Tan0014212 vs. NCBI nr
Match: KAG7024315.1 (hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-50
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MAAITSTCCSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MA+ITSTC SFFSIRS+SMEPRVRTSSP+H SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MASITSTCSSFFSIRSSSMEPRVRTSSPTHASPACGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDAPLIPNDGNLRQDGGAAGRRRAGKGKKCQPLVDAI 113
           SCIRIATAEDDGDEANDAPLIPNDGNL+QDG AAGRRR  KGKKCQPLVDAI
Sbjct: 61  SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 112

[Close]

BLAST of Tan0014212 vs. NCBI nr
Match: KAA0064464.1 (hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK20124.1 hypothetical protein E5676_scaffold134G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MAAITSTCCSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTC SFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDAPLIPNDGNLRQDGGAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND PLIPNDGNLRQDG AAGRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQDGTAAGRRRAGKGKK 104

[Close]

BLAST of Tan0014212 vs. NCBI nr
Match: XP_038897734.1 (uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida])

HSP 1 Score: 197.6 bits (501), Expect = 5.7e-47
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MAAITSTCCSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTC SFFSIRSNSMEPR+RTSS SHGSP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 27  MAAITSTCSSFFSIRSNSMEPRLRTSSSSHGSPACGKLDGVATWLINGFVTAFFGSLERC 86

Query: 61  SCIRIATAEDDGDEANDAPLIPNDGNLRQDGGAAGRRRAGKGKK 105
           SCIRIATAEDDGDEAND PLIPNDGNLRQDG AAGRRRAGKGKK
Sbjct: 87  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGTAAGRRRAGKGKK 130

[Close]

BLAST of Tan0014212 vs. ExPASy TrEMBL
Match: A0A6J1IIU9 (uncharacterized protein LOC111477268 OS=Cucurbita maxima OX=3661 GN=LOC111477268 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.9e-51
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MAAITSTCCSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTC SFFSIRS+SMEPRVRTSSPSH SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 91  MAAITSTCSSFFSIRSSSMEPRVRTSSPSHASPACGKLDGVATWLINGFVTAFFGSLERC 150

Query: 61  SCIRIATAEDDGDEANDAPLIPNDGNLRQDGGAAGRRRAGKGKKCQPLVDAI 113
           SCIRIATAEDDGDEANDAPLIPNDGNL+QDG AAGRRR  KGKKCQPLVDAI
Sbjct: 151 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 202

[Close]

BLAST of Tan0014212 vs. ExPASy TrEMBL
Match: A0A5D3D9D4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002500 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MAAITSTCCSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTC SFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDAPLIPNDGNLRQDGGAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND PLIPNDGNLRQDG AAGRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQDGTAAGRRRAGKGKK 104

[Close]

BLAST of Tan0014212 vs. ExPASy TrEMBL
Match: A0A0A0L2M3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644660 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 98/104 (94.23%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MAAITSTCCSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTC SFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDAPLIPNDGNLRQDGGAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND PLIPNDGNLRQ+G A GRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQEGTAGGRRRAGKGKK 104

[Close]

BLAST of Tan0014212 vs. ExPASy TrEMBL
Match: A0A2P5CWX9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_115610 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.7e-33
Identity = 80/105 (76.19%), Postives = 84/105 (80.00%), Query Frame = 0


Query: 1   MAAITST-CCSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLER 60
           MAA TST C SFFS+RSN MEP+VRTSS SHGSP CGK+DGVA WLIN   TAFF SLER
Sbjct: 1   MAATTSTSCTSFFSLRSNPMEPKVRTSS-SHGSPGCGKVDGVAMWLINSVTTAFFASLER 60

Query: 61  CSCIRIATAEDDGDEANDAPLIPNDGNLRQDGGAAGRRRAGKGKK 105
           CSCIRIAT  DDGD+AND PLI NDGNLR DGG   RRR GKG K
Sbjct: 61  CSCIRIATV-DDGDDANDLPLIFNDGNLRHDGGTISRRRTGKGNK 103

[Close]

BLAST of Tan0014212 vs. ExPASy TrEMBL
Match: A0A2P5G125 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_000250 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.3e-32
Identity = 79/105 (75.24%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 1   MAAITST-CCSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLER 60
           MAA TST C SFFS+RSN MEP+VR SS SHGSP CGK+DGVA WLIN   TAFF SLER
Sbjct: 1   MAATTSTSCTSFFSLRSNPMEPKVRASS-SHGSPGCGKVDGVAMWLINSVTTAFFASLER 60

Query: 61  CSCIRIATAEDDGDEANDAPLIPNDGNLRQDGGAAGRRRAGKGKK 105
           CSCIRIAT  DDGD+AND PLI NDGNLR DGG   RRR GKG K
Sbjct: 61  CSCIRIATV-DDGDDANDLPLIFNDGNLRHDGGTISRRRTGKGNK 103

[Close]

BLAST of Tan0014212 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 16 SNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDD--GD 75
          S+S+     T+S +  + S  KLD  A+W+    ++AFF SLERCSC+ ++T++DD  G+
Sbjct: 4  SSSINSTASTAS-NLSTASLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGE 63

Query: 76 EANDAPL 81
          E+++ PL
Sbjct: 64 ESHNRPL 69

[Close]

BLAST of Tan0014212 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06
Identity = 21/59 (35.59%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 19 MEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEAND 78
          M+  +  +S    + S  K+D  A+W+    ++AFF SLERC+C+ ++T+ DD D+ +D
Sbjct: 1  MDKSISITSNVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDD 59

The following BLAST results are available for this feature:

BLAST of Tan0014212 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0014212 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977101.1	3.8e-51	92.86	uncharacterized protein LOC111477268 [Cucurbita maxima]	[more]
KAG6591437.1	1.5e-50	91.96	hypothetical protein SDJN03_13783, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024315.1	1.9e-50	91.07	hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0064464.1	5.2e-48	96.15	hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK201...	[more]
XP_038897734.1	5.7e-47	94.23	uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida]	[more]

BLAST of Tan0014212 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IIU9	1.9e-51	92.86	uncharacterized protein LOC111477268 OS=Cucurbita maxima OX=3661 GN=LOC111477268...	[more]
A0A5D3D9D4	2.5e-48	96.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L2M3	2.1e-47	94.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644660 PE=4 SV=1	[more]
A0A2P5CWX9	8.7e-33	76.19	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_115610 PE...	[more]
A0A2P5G125	3.3e-32	75.24	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_000250 PE=4 SV...	[more]

BLAST of Tan0014212 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10810.1	1.6e-07	40.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G24026.1	1.8e-06	35.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..112
None	No IPR available	PANTHER	PTHR34061:SF2	PROTEIN, PUTATIVE-RELATED	coord: 4..104
None	No IPR available	PANTHER	PTHR34061	PROTEIN, PUTATIVE-RELATED	coord: 4..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014212.1	Tan0014212.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity