Tan0014196 (gene) Snake gourd v1

Overview


Name	Tan0014196
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L33-like
Location	LG01: 7962974 .. 7964148 (-)
RNA-Seq Expression	Tan0014196
Synteny	Tan0014196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACAACAATTCAAAGGCTTTGTTTGGACTTGGCACTTTCTTGTGGAATAAGGAATCGATTTCTCTGTAATTCATCCTCTTCAACTCCTTCAAACTCCGTCACTTTCAAGTCTCTCTCCTTCTCTGCTACCCTCTCGCTGAGCGTCATTCCCAATGTCAAAGGTAATTGCGAGCATTTCATCCAAATTCATCGCAATTCTCTTACCCTCAATTGTGCGAATTTTATCCCAATTCGAGTTCCCTTTTCTCCTATTTTTATGAAAATCACAATCAAAGACTGAGTATCATCATCGAGTGTCTCTTCTGGGAGAAATTTGTTCGGTGGGGTTTATTTTCAGTTTTTCTTACCAATCAAAACAGAAGATGGAGAAATTTAACATTTGGGGGTCTGTTGAAATCTTCAGGATCGTTGTCACAGAGCGCTCGGGACAGATCAATCCGTTATGGATCCGTAATTTGCATGGCCAAAAGATATGCTCCTAACACTACAAAGAGAAAGGTACAGAACATTTTAGCTAATTATTCCTTTTGGATGGATTGATTCTCTATCTTGTTTTTTCTTCGACAATGTGTGGATTATGGTAGAAATTTGCAGATCGAGAGGACGGTGATGCATATTATATGTTTGTGTATGTGTCTATGTTGACCCCTTTTGTGTCAATTTGTAGAATTTCCTTCAGAATCACCACATTCTGCATAATACAAGCTCGATATGGTATATAAAACTTATATTTATCTGATTGAATTTGCATCTTGGATATGTGATGATAGATAACACCTCCTAAACCTTCTGCTGGGATTATTCTGCATCGAAGTTTGGGACATTTTCTGTTCTAATTTTTTAGAAAGAGACCCACACAAGTTATTGGGAATAATATTGTGTAATTTGTTTGTTGTGTTAATGTCAATGTTGATTTGGTGATGTAACTAACTTGTCGATTGCATTCAAATGCAGAGGTTGGGTAGGAAGAGGGGTGGTGATCCAGACAATAAAAAGAAGACAAGGAGGAAAGGGGGAAGGAAGGATTTTAAAATAGTCCGACTCACCTCAGCTGCTGGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTTATAAGATTGAGCTCCAGAAGTATGACCCTCTTGCAAAACGTCATGTTCTGTTCACCGAGGTCAAGTGA

mRNA sequence

ATGGGGACAACAATTCAAAGGCTTTGTTTGGACTTGGCACTTTCTTGTGGAATAAGGAATCGATTTCTCTGTAATTCATCCTCTTCAACTCCTTCAAACTCCGTCACTTTCAAGTCTCTCTCCTTCTCTGCTACCCTCTCGCTGAGCGTCATTCCCAATGTCAAAGGATCGTTGTCACAGAGCGCTCGGGACAGATCAATCCGTTATGGATCCGTAATTTGCATGGCCAAAAGATATGCTCCTAACACTACAAAGAGAAAGAGGTTGGGTAGGAAGAGGGGTGGTGATCCAGACAATAAAAAGAAGACAAGGAGGAAAGGGGGAAGGAAGGATTTTAAAATAGTCCGACTCACCTCAGCTGCTGGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTTATAAGATTGAGCTCCAGAAGTATGACCCTCTTGCAAAACGTCATGTTCTGTTCACCGAGGTCAAGTGA

Coding sequence (CDS)

ATGGGGACAACAATTCAAAGGCTTTGTTTGGACTTGGCACTTTCTTGTGGAATAAGGAATCGATTTCTCTGTAATTCATCCTCTTCAACTCCTTCAAACTCCGTCACTTTCAAGTCTCTCTCCTTCTCTGCTACCCTCTCGCTGAGCGTCATTCCCAATGTCAAAGGATCGTTGTCACAGAGCGCTCGGGACAGATCAATCCGTTATGGATCCGTAATTTGCATGGCCAAAAGATATGCTCCTAACACTACAAAGAGAAAGAGGTTGGGTAGGAAGAGGGGTGGTGATCCAGACAATAAAAAGAAGACAAGGAGGAAAGGGGGAAGGAAGGATTTTAAAATAGTCCGACTCACCTCAGCTGCTGGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTTATAAGATTGAGCTCCAGAAGTATGACCCTCTTGCAAAACGTCATGTTCTGTTCACCGAGGTCAAGTGA

Protein sequence

MGTTIQRLCLDLALSCGIRNRFLCNSSSSTPSNSVTFKSLSFSATLSLSVIPNVKGSLSQSARDRSIRYGSVICMAKRYAPNTTKRKRLGRKRGGDPDNKKKTRRKGGRKDFKIVRLTSAAGTGFFYAKKKSRKMAYKIELQKYDPLAKRHVLFTEVK

Homology

[Close]

BLAST of Tan0014196 vs. ExPASy Swiss-Prot
Match: Q5FFJ4 (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rpmG PE=3 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-07
Identity = 25/46 (54.35%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 114 IVRLTSAAGTGFFYAKKKS-RKMAYKIELQKYDPLAKRHVLFTEVK 159
           +V+L S+AGTG+FY KK++ +K+  K+  +KYDP+A++HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of Tan0014196 vs. ExPASy Swiss-Prot
Match: Q5HBV6 (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=254945 GN=rpmG PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-07
Identity = 25/46 (54.35%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 114 IVRLTSAAGTGFFYAKKKS-RKMAYKIELQKYDPLAKRHVLFTEVK 159
           +V+L S+AGTG+FY KK++ +K+  K+  +KYDP+A++HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of Tan0014196 vs. ExPASy Swiss-Prot
Match: B6IN38 (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.5e-07
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 114 IVRLTSAAGTGFFYAKKKS-RKMAYKIELQKYDPLAKRHVLFTEVK 159
           +++L S+A TGFFY KKK+ RK   K+E +KYDP+A++HV+F E K
Sbjct: 8   LIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAK 53

[Close]

BLAST of Tan0014196 vs. ExPASy Swiss-Prot
Match: Q2W1A2 (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rpmG PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-06
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 114 IVRLTSAAGTGFFY-AKKKSRKMAYKIELQKYDPLAKRHVLFTEVK 159
           +++L S AGTGFFY AKK  RK   K+E +KYDP+ ++HV F E K
Sbjct: 8   LIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAK 53

[Close]

BLAST of Tan0014196 vs. ExPASy Swiss-Prot
Match: Q9RSS4 (50S ribosomal protein L33 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=rpmG PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-06
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 114 IVRLTSAAGTGFFYAKKKSRKMAY-KIELQKYDPLAKRHVLFTEVK 159
           IV++ S+AGTGF+Y   K+R+    K+EL+KYDP+AK+HV+F E K
Sbjct: 9   IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 54

[Close]

BLAST of Tan0014196 vs. NCBI nr
Match: KAG7015026.1 (rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.5 bits (654), Expect = 1.5e-64
Identity = 135/158 (85.44%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 1   MGTTIQRLCLDLALSCGIRNRFLCNSSSSTPSNSVTFKSLSFSATLSLSVIPNVKGSLSQ 60
           M  TI+RLCLD ALSCG RNRFLCNS+SSTP + V+FK LSFSA LSLSV+PNVK SLSQ
Sbjct: 1   MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARDRSIRYGSVICMAKRYAPNTTKRKRLGRKRGGDPDNKKKTRRKGGRKDFKIVRLTSA 120
           SAR+RSIRYGSVICMAKRYAPNTTKRKRL RKRGGDP+ KKKTRRKGGRKDFKI+RL+S 
Sbjct: 61  SARERSIRYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMAYKIELQKYDPLAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMA KIELQK+DPLAKRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of Tan0014196 vs. NCBI nr
Match: KAG6577004.1 (hypothetical protein SDJN03_24578, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.8 bits (647), Expect = 9.5e-64
Identity = 134/158 (84.81%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 1   MGTTIQRLCLDLALSCGIRNRFLCNSSSSTPSNSVTFKSLSFSATLSLSVIPNVKGSLSQ 60
           M  TI+RLCLD ALSCG RNRFLCNS+SSTP + V+FK LSFSA LSLSV+PNVK SLSQ
Sbjct: 1   MAATIRRLCLDSALSCGERNRFLCNSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARDRSIRYGSVICMAKRYAPNTTKRKRLGRKRGGDPDNKKKTRRKGGRKDFKIVRLTSA 120
           SAR+RSI YGSVICMAKRYAPNTTKRKRL RKRGGDP+ KKKTRRKGGRKDFKI+RL+S 
Sbjct: 61  SARERSIPYGSVICMAKRYAPNTTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMAYKIELQKYDPLAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMA KIELQK+DPLAKRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of Tan0014196 vs. NCBI nr
Match: XP_023552499.1 (uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249.2 bits (635), Expect = 2.3e-62
Identity = 131/158 (82.91%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MGTTIQRLCLDLALSCGIRNRFLCNSSSSTPSNSVTFKSLSFSATLSLSVIPNVKGSLSQ 60
           M  TI+RLC D ALSCG RNRFLC+S+SSTP + V+FK LSFSA LSLSV+PNVK SLSQ
Sbjct: 1   MAATIRRLCFDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARDRSIRYGSVICMAKRYAPNTTKRKRLGRKRGGDPDNKKKTRRKGGRKDFKIVRLTSA 120
           SAR+RSIR+GSV CMAKRYAPNTTKRKRL RKRGGDP+ KKKTRRKGGRKDFKI+RL+S 
Sbjct: 61  SARERSIRHGSVTCMAKRYAPNTTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMAYKIELQKYDPLAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMA KIELQK+DPLAKRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of Tan0014196 vs. NCBI nr
Match: XP_022922690.1 (uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata] >XP_022922691.1 uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata])

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 130/158 (82.28%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MGTTIQRLCLDLALSCGIRNRFLCNSSSSTPSNSVTFKSLSFSATLSLSVIPNVKGSLSQ 60
           M  TI+R CLD ALSCG RNRFLC+S+SSTP + V+FK LSFSA LSLSV+PNVK SLSQ
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARDRSIRYGSVICMAKRYAPNTTKRKRLGRKRGGDPDNKKKTRRKGGRKDFKIVRLTSA 120
           SAR+RSIR+GSVICMA+RYAPN TKRKRL RKRGGDP+ KKKTRRKGGRKDFKI+RL+S 
Sbjct: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMAYKIELQKYDPLAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMA KIELQK+DPLAKRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of Tan0014196 vs. NCBI nr
Match: XP_022922689.1 (uncharacterized protein LOC111430611 isoform X1 [Cucurbita moschata])

HSP 1 Score: 245.0 bits (624), Expect = 4.4e-61
Identity = 129/157 (82.17%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MGTTIQRLCLDLALSCGIRNRFLCNSSSSTPSNSVTFKSLSFSATLSLSVIPNVKGSLSQ 60
           M  TI+R CLD ALSCG RNRFLC+S+SSTP + V+FK LSFSA LSLSV+PNVK SLSQ
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARDRSIRYGSVICMAKRYAPNTTKRKRLGRKRGGDPDNKKKTRRKGGRKDFKIVRLTSA 120
           SAR+RSIR+GSVICMA+RYAPN TKRKRL RKRGGDP+ KKKTRRKGGRKDFKI+RL+S 
Sbjct: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMAYKIELQKYDPLAKRHVLFTEV 158
           AGTGFFYAKKKSRKMA KIELQK+DPLAKRHVLFTEV
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV 157

[Close]

BLAST of Tan0014196 vs. ExPASy TrEMBL
Match: A0A6J1E4T6 (uncharacterized protein LOC111430611 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430611 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.6e-62
Identity = 130/158 (82.28%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 1   MGTTIQRLCLDLALSCGIRNRFLCNSSSSTPSNSVTFKSLSFSATLSLSVIPNVKGSLSQ 60
           M  TI+R CLD ALSCG RNRFLC+S+SSTP + V+FK LSFSA LSLSV+PNVK SLSQ
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARDRSIRYGSVICMAKRYAPNTTKRKRLGRKRGGDPDNKKKTRRKGGRKDFKIVRLTSA 120
           SAR+RSIR+GSVICMA+RYAPN TKRKRL RKRGGDP+ KKKTRRKGGRKDFKI+RL+S 
Sbjct: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMAYKIELQKYDPLAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMA KIELQK+DPLAKRHVLFTEVK
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of Tan0014196 vs. ExPASy TrEMBL
Match: A0A6J1E445 (uncharacterized protein LOC111430611 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430611 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61
Identity = 129/157 (82.17%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MGTTIQRLCLDLALSCGIRNRFLCNSSSSTPSNSVTFKSLSFSATLSLSVIPNVKGSLSQ 60
           M  TI+R CLD ALSCG RNRFLC+S+SSTP + V+FK LSFSA LSLSV+PNVK SLSQ
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60

Query: 61  SARDRSIRYGSVICMAKRYAPNTTKRKRLGRKRGGDPDNKKKTRRKGGRKDFKIVRLTSA 120
           SAR+RSIR+GSVICMA+RYAPN TKRKRL RKRGGDP+ KKKTRRKGGRKDFKI+RL+S 
Sbjct: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMAYKIELQKYDPLAKRHVLFTEV 158
           AGTGFFYAKKKSRKMA KIELQK+DPLAKRHVLFTEV
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV 157

[Close]

BLAST of Tan0014196 vs. ExPASy TrEMBL
Match: A0A6J1J566 (uncharacterized protein LOC111482725 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482725 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.4e-60
Identity = 127/158 (80.38%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 1   MGTTIQRLCLDLALSCGIRNRFLCNSSSSTPSNSVTFKSLSFSATLSLSVIPNVKGSLSQ 60
           M  TI+RLCL  AL CG RNRFLC+S+SSTP + V+FK LSFSA LSL V+PNVK SLSQ
Sbjct: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLVVPNVKESLSQ 60

Query: 61  SARDRSIRYGSVICMAKRYAPNTTKRKRLGRKRGGDPDNKKKTRRKGGRKDFKIVRLTSA 120
           SAR+RSIR+GSVICMA+RYAPNTTKRKRL RKRGGDP+ K+KTRRKGGRKDFKI+RL+S 
Sbjct: 61  SARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMAYKIELQKYDPLAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMA KIELQK+DPLAKRHVLFTE K
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEAK 158

[Close]

BLAST of Tan0014196 vs. ExPASy TrEMBL
Match: A0A6J1J250 (uncharacterized protein LOC111482725 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482725 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.4e-60
Identity = 127/158 (80.38%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 1   MGTTIQRLCLDLALSCGIRNRFLCNSSSSTPSNSVTFKSLSFSATLSLSVIPNVKGSLSQ 60
           M  TI+RLCL  AL CG RNRFLC+S+SSTP + V+FK LSFSA LSL V+PNVK SLSQ
Sbjct: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLVVPNVKESLSQ 60

Query: 61  SARDRSIRYGSVICMAKRYAPNTTKRKRLGRKRGGDPDNKKKTRRKGGRKDFKIVRLTSA 120
           SAR+RSIR+GSVICMA+RYAPNTTKRKRL RKRGGDP+ K+KTRRKGGRKDFKI+RL+S 
Sbjct: 61  SARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGRKDFKIIRLSST 120

Query: 121 AGTGFFYAKKKSRKMAYKIELQKYDPLAKRHVLFTEVK 159
           AGTGFFYAKKKSRKMA KIELQK+DPLAKRHVLFTE K
Sbjct: 121 AGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEAK 158

[Close]

BLAST of Tan0014196 vs. ExPASy TrEMBL
Match: A0A5A7UZ21 (50S ribosomal protein L33-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001000 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.8e-58
Identity = 128/160 (80.00%), Postives = 136/160 (85.00%), Query Frame = 0


Query: 1   MGTTIQRLCLDLALSCGIRNRFLCNSSSSTPSNSVTFKSLSFSATLS--LSVIPNVKGSL 60
           M TTIQR CLDL LSCG RN+FL NSSSS PSN +TF S SF ATLS  LS +PNVKG L
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 61  SQSARDRSIRYGSVICMAKRYAPNTTKRKRLGRKRGGDPDNKKKTRRKGGRKDFKIVRLT 120
            Q A +RSIRYGSVICMAKRYAP+TTKRKRL RKRGGDP  KKKTRRKGGRKDFKIVRL+
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGRKDFKIVRLS 120

Query: 121 SAAGTGFFYAKKKSRKMAYKIELQKYDPLAKRHVLFTEVK 159
           S A TGFFYAKKKSRKMA KIE+QKYDP+A RHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of Tan0014196 vs. TAIR 10
Match: AT3G06320.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-10
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 109 RKDFKIVRLTSAAGTGFFYAKKKSRK-MAYKIELQKYDPLAKRHVLFTEVK 159
           +K F  +RL SAAGTGFFY K+KS K +  K+E +KYDP   RHVLFTE K
Sbjct: 6   KKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of Tan0014196 vs. TAIR 10
Match: AT5G18790.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-10
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 109 RKDFKIVRLTSAAGTGFFYAKKKSRK-MAYKIELQKYDPLAKRHVLFTEVK 159
           +K F  +RL SAAGTGFFY K+KS K +  K+E +KYDP   RHVLFTE K
Sbjct: 6   KKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

The following BLAST results are available for this feature:

BLAST of Tan0014196 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5FFJ4	2.9e-07	54.35	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=...	[more]
Q5HBV6	2.9e-07	54.35	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=25494...	[more]
B6IN38	6.5e-07	54.35	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
Q2W1A2	2.5e-06	54.35	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]
Q9RSS4	3.2e-06	54.35	50S ribosomal protein L33 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20...	[more]

BLAST of Tan0014196 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015026.1	1.5e-64	85.44	rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6577004.1	9.5e-64	84.81	hypothetical protein SDJN03_24578, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023552499.1	2.3e-62	82.91	uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo]	[more]
XP_022922690.1	1.2e-61	82.28	uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata] >XP_0229226...	[more]
XP_022922689.1	4.4e-61	82.17	uncharacterized protein LOC111430611 isoform X1 [Cucurbita moschata]	[more]

BLAST of Tan0014196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E4T6	5.6e-62	82.28	uncharacterized protein LOC111430611 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E445	2.1e-61	82.17	uncharacterized protein LOC111430611 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J566	2.4e-60	80.38	uncharacterized protein LOC111482725 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J250	2.4e-60	80.38	uncharacterized protein LOC111482725 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7UZ21	3.8e-58	80.00	50S ribosomal protein L33-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Tan0014196 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06320.1	5.0e-10	60.78	Ribosomal protein L33 family protein	[more]
AT5G18790.1	5.0e-10	60.78	Ribosomal protein L33 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038584	Ribosomal protein L33 superfamily	GENE3D	2.20.28.120	Ribosomal protein L33	coord: 100..157 e-value: 6.5E-16 score: 60.2
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 114..158 e-value: 7.4E-8 score: 32.7
IPR001705	Ribosomal protein L33	TIGRFAM	TIGR01023	TIGR01023	coord: 109..158 e-value: 1.4E-11 score: 42.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..110
None	No IPR available	PANTHER	PTHR15238	54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL	coord: 108..158
None	No IPR available	PANTHER	PTHR15238:SF1	54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL	coord: 108..158
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 127..145
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 113..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014196.1	Tan0014196.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome