Tan0014155 (gene) Snake gourd v1

Overview
NameTan0014155
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG08: 6309952 .. 6310371 (+)
RNA-Seq ExpressionTan0014155
SyntenyTan0014155
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATGCCTCTTGGTTGGAGAATCTCAAGCGAAGGAGGTGTCGGTTGGTTGGTGATGAATGATAGCAGTCACCTTATTCTAGGTGGGTGCAAATTGTTCTCTTTGAGGTGGTTGATCAAGATTTTTGAAGCTAAAGTTGTGGTTGAAAGTTTGGAAAATGTCATGCATCTTGCAAAAGGTTCTAATCTCCCTATTGAAGTAGAGTCGGATTTAGTTGAAGTGCTCAAGTTCTTAAGTGGCTCTAAGTCGAACCTTTCAGAAGTGAGTTTGTTCATTGAAGAAGCTCTTCATCTTTCTACTTCTTTTAGTGATGATAATTTTTGTAAAATTTCTAGAGATGAGAACAAAGTAGCTCATGAACTTGCAACTTTGACTTCTTCTTTGAAAGGTTTTTTGGTTTGGAACGAGCACTTTTGA

mRNA sequence

ATGTCGATGCCTCTTGGTTGGAGAATCTCAAGCGAAGGAGGTGTCGGTTGGTTGGTGATGAATGATAGCAGTCACCTTATTCTAGGTGGGTGCAAATTGTTCTCTTTGAGGTGGTTGATCAAGATTTTTGAAGCTAAAGTTGTGGTTGAAAGTTTGGAAAATGTCATGCATCTTGCAAAAGGTTCTAATCTCCCTATTGAAGTAGAGTCGGATTTAGTTGAAGTGCTCAAGTTCTTAAGTGGCTCTAAGTCGAACCTTTCAGAAGTGAGTTTGTTCATTGAAGAAGCTCTTCATCTTTCTACTTCTTTTAGTGATGATAATTTTTGTAAAATTTCTAGAGATGAGAACAAAGTAGCTCATGAACTTGCAACTTTGACTTCTTCTTTGAAAGGTTTTTTGGTTTGGAACGAGCACTTTTGA

Coding sequence (CDS)

ATGTCGATGCCTCTTGGTTGGAGAATCTCAAGCGAAGGAGGTGTCGGTTGGTTGGTGATGAATGATAGCAGTCACCTTATTCTAGGTGGGTGCAAATTGTTCTCTTTGAGGTGGTTGATCAAGATTTTTGAAGCTAAAGTTGTGGTTGAAAGTTTGGAAAATGTCATGCATCTTGCAAAAGGTTCTAATCTCCCTATTGAAGTAGAGTCGGATTTAGTTGAAGTGCTCAAGTTCTTAAGTGGCTCTAAGTCGAACCTTTCAGAAGTGAGTTTGTTCATTGAAGAAGCTCTTCATCTTTCTACTTCTTTTAGTGATGATAATTTTTGTAAAATTTCTAGAGATGAGAACAAAGTAGCTCATGAACTTGCAACTTTGACTTCTTCTTTGAAAGGTTTTTTGGTTTGGAACGAGCACTTTTGA

Protein sequence

MSMPLGWRISSEGGVGWLVMNDSSHLILGGCKLFSLRWLIKIFEAKVVVESLENVMHLAKGSNLPIEVESDLVEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKISRDENKVAHELATLTSSLKGFLVWNEHF
Homology
BLAST of Tan0014155 vs. NCBI nr
Match: XP_010670097.1 (PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 41/127 (32.28%), Postives = 64/127 (50.39%), Query Frame = 0

Query: 14  GVGWLVMNDSSHLILGGCKLFSLRWLIKIFEAKVVVESLENVMHLAKG-SNLPIEVESDL 73
           G+G +  ++   ++  G   F + W  +I EAK +   ++    LAK  S   IEVESD 
Sbjct: 45  GLGVVFRDEYGEVLAAGTYQFHVAWEPRIAEAKAIFHGVK----LAKEMSYSHIEVESDS 104

Query: 74  VEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKISRDENKVAHELATLTSSLKGF 133
           +  ++ L   K   SE +L +++ L L+ SF +  +C + R  NKVAH LA L     G 
Sbjct: 105 LLAIQALRSGKGGSSEFNLILDDVLDLARSFDNVIWCFVKRSGNKVAHMLAHLQPWELGK 164

Query: 134 LVWNEHF 140
             W + F
Sbjct: 165 RTWVDDF 167

BLAST of Tan0014155 vs. NCBI nr
Match: XP_021840770.1 (uncharacterized protein LOC110780758, partial [Spinacia oleracea])

HSP 1 Score: 54.7 bits (130), Expect = 7.5e-04
Identity = 37/128 (28.91%), Postives = 64/128 (50.00%), Query Frame = 0

Query: 14  GVGWLVMNDSSHLILGGCKLFS--LRWLIKIFEAKVVVESLENVMHLAKGSNLPIEVESD 73
           G+G +V ++   ++  GC ++    RW  ++ EAK V+  L+  M +       + VE D
Sbjct: 74  GLGAVVRDNGGEVL--GCMVWQGRERWETRVAEAKAVLFGLKVSMEMGCRQ---VVVEGD 133

Query: 74  LVEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKISRDENKVAHELATLTSSLKG 133
            + +++ L G + + S +SL +E+    S+ F    FC + R  N+VAH LA       G
Sbjct: 134 CLPIVQALQGGRKDNSSLSLVLEDIRDFSSMFDSVRFCFVKRSGNRVAHHLAHYQPWEFG 193

Query: 134 FLVWNEHF 140
             VW + F
Sbjct: 194 QRVWLDDF 196

BLAST of Tan0014155 vs. NCBI nr
Match: XP_021753633.1 (uncharacterized protein LOC110719026 [Chenopodium quinoa])

HSP 1 Score: 54.7 bits (130), Expect = 7.5e-04
Identity = 38/125 (30.40%), Postives = 67/125 (53.60%), Query Frame = 0

Query: 14  GVGWLVMNDSSHLILGGCKLFSLRWLIKIFEAKVVVESLENVMHLAKGSNL-PIEVESDL 73
           G+G +V ++   ++  G +     W ++I EAK    ++E  + +A G  +  + VESD 
Sbjct: 178 GLGAVVRDEVGIVVAVGVQQIKASWEVRIAEAK----AIEWGLRVAAGLGVRDLVVESDC 237

Query: 74  VEVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKISRDENKVAHELATLTSSLKGF 133
           ++V++ L    ++LSE+SL I++ L L +SF +  +  + R  NKVAH  A       G 
Sbjct: 238 LQVIQALKNKTADLSELSLIIDDILLLCSSFDNVIWSYVKRGGNKVAHFWAHFHPWEVGQ 297

Query: 134 LVWNE 138
            VW +
Sbjct: 298 RVWQD 298

BLAST of Tan0014155 vs. ExPASy TrEMBL
Match: A0A7C9A7V4 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-06
Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 0

Query: 14  GVGWLVMNDSSHLILGGCKLFSLRWLIKIFEAKVVVESLENVMHLAKGSNLPIEVESDLV 73
           GVG +V + +  + +  C+ F   W ++  EA  V+  L+  +   +G +  +E+E+D  
Sbjct: 311 GVGVVVRDKNGDVKIMACRSFRANWEVETVEAYAVLYGLQ--ICWQEGFH-TLELETDSK 370

Query: 74  EVLKFLSGSKSNLSEVSLFIEEALHLSTSFSDDNFCKISRDENKVAHELATLTSSLKGFL 133
           +V   L+G K  L+  S FI +AL+L T     +F  +SR  N+VAHELA L   L+   
Sbjct: 371 QVADALNGKKDFLNYTSTFIHDALNLGTRIPVISFSFVSRVTNRVAHELARLALRLRTER 429

Query: 134 VW 136
           +W
Sbjct: 431 IW 429

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_010670097.14.0e-0532.28PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris][more]
XP_021840770.17.5e-0428.91uncharacterized protein LOC110780758, partial [Spinacia oleracea][more]
XP_021753633.17.5e-0430.40uncharacterized protein LOC110719026 [Chenopodium quinoa][more]
Match NameE-valueIdentityDescription
A0A7C9A7V45.0e-0632.79Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 10..124
e-value: 1.5E-10
score: 40.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0014155.1Tan0014155.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity